Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02142
(631 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18963|IRA1_YEAST Inhibitory regulator protein IRA1 35 0.21
sp|Q66S37|MBL2_CERAE Mannose-binding protein C precursor (M... 31 3.0
sp|Q66S65|MBL2_PAPPA Mannose-binding protein C precursor (M... 30 3.9
sp|Q66S41|MBL2_preOB Mannose-binding protein C precursor (M... 30 5.1
sp|Q66S45|MBL2_preCR Mannose-binding protein C precursor (M... 30 5.1
sp|Q66S63|MBL2_PANTR Mannose-binding protein C precursor (M... 30 6.6
sp|P11226|MBL2_HUMAN Mannose-binding protein C precursor (M... 30 6.6
sp|P68439|RP94_VACCC RNA-polymerase-associated transcriptio... 30 6.6
sp|P68438|RP94_VACCV RNA-polymerase-associated transcriptio... 30 6.6
sp|O57207|RP94_VACCA RNA-polymerase-associated transcriptio... 30 6.6
>sp|P18963|IRA1_YEAST Inhibitory regulator protein IRA1
Length = 3092
Score = 34.7 bits (78), Expect = 0.21
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 15/106 (14%)
Frame = +1
Query: 346 KCYKLGKYQTIKQLKIIISE-LKKTNDEDLLIFYKSNQLNDVDKSID-----------YY 489
K ++ + ++Q+ III LK+ +DE +++ + ++ L+ VDK I+ YY
Sbjct: 1420 KSHEDSSFVLLEQIIIIIRTILKRDDDEKIMLLFSTDLLDAVDKLIEIVEKISIKSSKYY 1479
Query: 490 K*RIRLDKCCKQISDCKY---FMNQFHAKNISLNLKFELYQALSIN 618
K I++ K + + N FH KN L L ++ LSIN
Sbjct: 1480 KGIIQMSKMFRAFEHSEKNLGISNHFHLKNKWLKLVIGWFK-LSIN 1524
>sp|Q66S37|MBL2_CERAE Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
protein) (Mannose-binding lectin)
Length = 248
Score = 30.8 bits (68), Expect = 3.0
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 6 EYSALESEYSALKSAITYKLRFQIGNQFDETELFVSKFDNVIKLKKSIC 152
E AL++E + +K +T+ L Q+GN+F T + FD V K++C
Sbjct: 111 ERKALQTEMARIKKWLTFSLGRQVGNKFFLTNGEMMSFDKV----KALC 155
>sp|Q66S65|MBL2_PAPPA Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
protein) (Mannose-binding lectin)
sp|Q66S50|MBL2_MACFA Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
protein) (Mannose-binding lectin)
Length = 248
Score = 30.4 bits (67), Expect = 3.9
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 6 EYSALESEYSALKSAITYKLRFQIGNQFDETELFVSKFDNVIKLKKSIC 152
E AL++E + +K +T+ L Q+GN+F T + FD V K++C
Sbjct: 111 ERKALQTEMARIKKWLTFSLGRQVGNKFFLTNGEMMTFDKV----KALC 155
>sp|Q66S41|MBL2_preOB Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
protein) (Mannose-binding lectin)
Length = 248
Score = 30.0 bits (66), Expect = 5.1
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 6 EYSALESEYSALKSAITYKLRFQIGNQFDETELFVSKFDNVIKLKKSIC 152
E AL++E + +K +T+ L Q+GN+F T + FD V K++C
Sbjct: 111 ERKALQTEMAHIKKWLTFSLGRQVGNKFFLTNGEMMTFDKV----KALC 155
>sp|Q66S45|MBL2_preCR Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
protein) (Mannose-binding lectin)
Length = 248
Score = 30.0 bits (66), Expect = 5.1
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 6 EYSALESEYSALKSAITYKLRFQIGNQFDETELFVSKFDNVIKLKKSIC 152
E AL++E + +K +T+ L Q+GN+F T + FD V K++C
Sbjct: 111 ERKALQTEMAHIKKWLTFSLGRQVGNKFFLTNGEMMTFDKV----KALC 155
>sp|Q66S63|MBL2_PANTR Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
protein) (Mannose-binding lectin)
Length = 248
Score = 29.6 bits (65), Expect = 6.6
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 6 EYSALESEYSALKSAITYKLRFQIGNQFDETELFVSKFDNVIKLKKSIC 152
E AL++E + +K +T+ L Q+GN+F T + F+ V K++C
Sbjct: 111 ERKALQTEMARIKKWLTFSLGKQVGNKFFLTNGEIMTFEKV----KALC 155
>sp|P11226|MBL2_HUMAN Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
protein) (Mannose-binding lectin)
Length = 248
Score = 29.6 bits (65), Expect = 6.6
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 6 EYSALESEYSALKSAITYKLRFQIGNQFDETELFVSKFDNVIKLKKSIC 152
E AL++E + +K +T+ L Q+GN+F T + F+ V K++C
Sbjct: 111 ERKALQTEMARIKKWLTFSLGKQVGNKFFLTNGEIMTFEKV----KALC 155
>sp|P68439|RP94_VACCC RNA-polymerase-associated transcription specificity factor (RAP94)
Length = 795
Score = 29.6 bits (65), Expect = 6.6
Identities = 15/64 (23%), Positives = 32/64 (50%)
Frame = +3
Query: 132 KLKKSICDRNMNMKDYKRMIMKYKGVAIDNNQFLLSCIDSTNIYPIFCEFDDNVDVDAMI 311
K+K + D N++ K Y I + K + + N + +S I +I ++ + N+D D
Sbjct: 14 KIKAYLLDANISPKSYDDFISRNKNIFV-INLYNVSTITEEDIRLLYTTIEQNIDADDQT 72
Query: 312 VIKL 323
++ +
Sbjct: 73 LVAI 76
>sp|P68438|RP94_VACCV RNA-polymerase-associated transcription specificity factor (RAP94)
Length = 795
Score = 29.6 bits (65), Expect = 6.6
Identities = 15/64 (23%), Positives = 32/64 (50%)
Frame = +3
Query: 132 KLKKSICDRNMNMKDYKRMIMKYKGVAIDNNQFLLSCIDSTNIYPIFCEFDDNVDVDAMI 311
K+K + D N++ K Y I + K + + N + +S I +I ++ + N+D D
Sbjct: 14 KIKAYLLDANISPKSYDDFISRNKNIFV-INLYNVSTITEEDIRLLYTTIEQNIDADDQT 72
Query: 312 VIKL 323
++ +
Sbjct: 73 LVAI 76
>sp|O57207|RP94_VACCA RNA-polymerase-associated transcription specificity factor (RAP94)
Length = 795
Score = 29.6 bits (65), Expect = 6.6
Identities = 15/64 (23%), Positives = 32/64 (50%)
Frame = +3
Query: 132 KLKKSICDRNMNMKDYKRMIMKYKGVAIDNNQFLLSCIDSTNIYPIFCEFDDNVDVDAMI 311
K+K + D N++ K Y I + K + + N + +S I +I ++ + N+D D
Sbjct: 14 KIKAYLLDANISPKSYDDFISRNKNIFV-INLYNVSTITEEDIRLLYTTIEQNIDADDQT 72
Query: 312 VIKL 323
++ +
Sbjct: 73 LVAI 76
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,118,633
Number of Sequences: 369166
Number of extensions: 1094680
Number of successful extensions: 2761
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2746
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5023626210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)