Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02141
(772 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O77215|UNC4_DROME Homeobox protein unc-4 (Paired-like ho... 119 9e-27
sp|P29506|UNC4_CAEEL Homeobox protein unc-4 (Homeobox prote... 82 1e-15
sp|O97039|RX_DUGJA Retinal homeobox protein Rax (DjRax) 77 4e-14
sp|Q06453|AL_DROME Homeobox protein aristaless 77 5e-14
sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 77 7e-14
sp|O42357|RX2_BRARE Retinal homeobox protein Rx2 77 7e-14
sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx (DRx1) (DRx) 76 1e-13
sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 (cRax1) 76 1e-13
sp|O18381|PAX6_DROME Paired box protein Pax-6 (Eyeless prot... 76 1e-13
sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx (Retina and ... 75 2e-13
>sp|O77215|UNC4_DROME Homeobox protein unc-4 (Paired-like homeodomain protein unc-4)
(DPHD-1)
Length = 428
Score = 119 bits (298), Expect = 9e-27
Identities = 55/75 (73%), Positives = 61/75 (81%)
Frame = +1
Query: 22 WQLDQLEVVFKTSHYPDVSSRESLASSLGLPESRVQVWFQNRRAKWRKKENTKKGPGRPA 201
WQL++LE F SHYPD+ RE+LA L L ESRV VWFQNRRAK RK+E+TKKGPGRPA
Sbjct: 93 WQLEELERAFSASHYPDIFMREALAMRLDLKESRVAVWFQNRRAKVRKREHTKKGPGRPA 152
Query: 202 HNAQPVTCSGEPISP 246
HNAQP TCSGEPI P
Sbjct: 153 HNAQPQTCSGEPIPP 167
>sp|P29506|UNC4_CAEEL Homeobox protein unc-4 (Homeobox protein ceh-4) (Uncoordinated
protein 4)
Length = 252
Score = 82.4 bits (202), Expect = 1e-15
Identities = 37/55 (67%), Positives = 43/55 (78%)
Frame = +1
Query: 22 WQLDQLEVVFKTSHYPDVSSRESLASSLGLPESRVQVWFQNRRAKWRKKENTKKG 186
WQL++LE F+ SHYPDV RE+LA L L ESRVQVWFQNRRAKWRK+E + G
Sbjct: 98 WQLEELESAFEASHYPDVFMREALAMRLDLLESRVQVWFQNRRAKWRKREQNRNG 152
>sp|O97039|RX_DUGJA Retinal homeobox protein Rax (DjRax)
Length = 268
Score = 77.4 bits (189), Expect = 4e-14
Identities = 39/66 (59%), Positives = 45/66 (68%)
Frame = +1
Query: 22 WQLDQLEVVFKTSHYPDVSSRESLASSLGLPESRVQVWFQNRRAKWRKKENTKKGPGRPA 201
+QL +LE F+ SHYPDV SRE LA + LPE RVQVWFQNRRAKWR++E K
Sbjct: 97 YQLHELERAFEKSHYPDVYSREELAMKISLPEVRVQVWFQNRRAKWRRQE--KIEAANHT 154
Query: 202 HNAQPV 219
HN Q V
Sbjct: 155 HNLQEV 160
>sp|Q06453|AL_DROME Homeobox protein aristaless
Length = 408
Score = 77.0 bits (188), Expect = 5e-14
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = +1
Query: 22 WQLDQLEVVFKTSHYPDVSSRESLASSLGLPESRVQVWFQNRRAKWRKKENTKKGPGRPA 201
+QL++LE F +HYPDV +RE LA +GL E+R+QVWFQNRRAKWRK+E K GP
Sbjct: 95 FQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE--KVGPQSHP 152
Query: 202 HN 207
+N
Sbjct: 153 YN 154
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2
Length = 327
Score = 76.6 bits (187), Expect = 7e-14
Identities = 37/76 (48%), Positives = 52/76 (68%)
Frame = +1
Query: 22 WQLDQLEVVFKTSHYPDVSSRESLASSLGLPESRVQVWFQNRRAKWRKKENTKKGPGRPA 201
+QL +LE F+ SHYPDV SRE LA+ + LPE RVQVWFQNRRAKWR++E +
Sbjct: 147 YQLHELERAFEKSHYPDVYSREELATKVNLPEVRVQVWFQNRRAKWRRQEKMDTSTMK-L 205
Query: 202 HNAQPVTCSGEPISPT 249
H++ ++ + P+ P+
Sbjct: 206 HDSPMLSFNRPPMPPS 221
>sp|O42357|RX2_BRARE Retinal homeobox protein Rx2
Length = 327
Score = 76.6 bits (187), Expect = 7e-14
Identities = 38/75 (50%), Positives = 51/75 (68%)
Frame = +1
Query: 22 WQLDQLEVVFKTSHYPDVSSRESLASSLGLPESRVQVWFQNRRAKWRKKENTKKGPGRPA 201
+QL +LE F+ SHYPDV SRE LA + LPE RVQVWFQNRRAKWR++E G +
Sbjct: 145 YQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKMDTGTMK-L 203
Query: 202 HNAQPVTCSGEPISP 246
H++ + + P++P
Sbjct: 204 HDSPIRSFNRPPMAP 218
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx (DRx1) (DRx)
Length = 873
Score = 75.9 bits (185), Expect = 1e-13
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +1
Query: 22 WQLDQLEVVFKTSHYPDVSSRESLASSLGLPESRVQVWFQNRRAKWRKKENTK 180
+QL +LE F+ SHYPDV SRE LA + LPE RVQVWFQNRRAKWR++E ++
Sbjct: 538 YQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKSE 590
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 (cRax1)
Length = 228
Score = 75.9 bits (185), Expect = 1e-13
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Frame = +1
Query: 22 WQLDQLEVVFKTSHYPDVSSRESLASSLGLPESRVQVWFQNRRAKWRKKENTKKGPGR-- 195
+QL +LE F+ SHYPDV SRE LA + LPE RVQVWFQNRRAKWR++E + +
Sbjct: 46 YQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKMEASSMKLH 105
Query: 196 ----PAHNAQPVTCSGEPIS 243
+ N P+T + P+S
Sbjct: 106 DTPMLSFNRPPMTANVGPMS 125
>sp|O18381|PAX6_DROME Paired box protein Pax-6 (Eyeless protein)
Length = 857
Score = 75.9 bits (185), Expect = 1e-13
Identities = 34/68 (50%), Positives = 44/68 (64%)
Frame = +1
Query: 25 QLDQLEVVFKTSHYPDVSSRESLASSLGLPESRVQVWFQNRRAKWRKKENTKKGPGRPAH 204
Q+D LE F+ +HYPDV +RE LA +GLPE+R+QVWF NRRAKWR++E + P
Sbjct: 441 QIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPNS 500
Query: 205 NAQPVTCS 228
T S
Sbjct: 501 TGASATSS 508
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx (Retina and anterior neural fold
homeobox protein)
Length = 346
Score = 75.5 bits (184), Expect = 2e-13
Identities = 34/50 (68%), Positives = 40/50 (80%)
Frame = +1
Query: 22 WQLDQLEVVFKTSHYPDVSSRESLASSLGLPESRVQVWFQNRRAKWRKKE 171
+QL +LE F+ SHYPDV SRE LA + LPE RVQVWFQNRRAKWR++E
Sbjct: 146 YQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQE 195
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,727,554
Number of Sequences: 369166
Number of extensions: 1271919
Number of successful extensions: 4733
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4732
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)