Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02136
(747 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8N0X7|SPG20_HUMAN Spartin (Trans-activated by hepatitis... 44 5e-04
sp|Q8R1X6|SPG20_MOUSE Spartin 44 6e-04
sp|Q8KA40|FLIK_BUCAP Flagellar hook-length control protein 31 4.0
sp|Q86UK0|ABCAC_HUMAN ATP-binding cassette sub-family A mem... 31 4.0
sp|Q9V496|APLP_DROME Apolipophorins precursor (Retinoid- an... 30 5.3
sp|P98064|MASP1_MOUSE Complement-activating component of Ra... 30 9.0
sp|O42649|SMC3_SCHPO Structural maintenance of chromosome 3... 30 9.0
>sp|Q8N0X7|SPG20_HUMAN Spartin (Trans-activated by hepatitis C virus core protein 1)
Length = 666
Score = 43.9 bits (102), Expect = 5e-04
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +3
Query: 372 ADLLYSIQSECQYTKIDSNEVFDIPSYPGSLEIYKFPSN-----LKCSKGFIVVSDWIGV 536
AD L I + Q ++ PSYPG L I +F N L GF+ V DW+
Sbjct: 218 ADELILIPNGVQIFFVNPAGEVSAPSYPGYLRIVRFLDNSLDTVLNRPPGFLQVCDWLYP 277
Query: 537 LISNETPILITNEGALMFLD 596
L+ + +P+L GA MF D
Sbjct: 278 LVPDRSPVLKCTAGAYMFPD 297
>sp|Q8R1X6|SPG20_MOUSE Spartin
Length = 671
Score = 43.5 bits (101), Expect = 6e-04
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +3
Query: 372 ADLLYSIQSECQYTKIDSNEVFDIPSYPGSLEIYKFPSN-----LKCSKGFIVVSDWIGV 536
AD L I + Q ++ PSYPG L I +F N L GF+ V DW+
Sbjct: 218 ADELILIPNGVQIFFVNPAGEVSAPSYPGYLRIVRFLDNSLDTVLNRPPGFLQVCDWLYP 277
Query: 537 LISNETPILITNEGALMFLD 596
L+ + +P+L GA MF D
Sbjct: 278 LVPDRSPVLKCTVGAYMFPD 297
>sp|Q8KA40|FLIK_BUCAP Flagellar hook-length control protein
Length = 381
Score = 30.8 bits (68), Expect = 4.0
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 2/159 (1%)
Frame = +3
Query: 93 NIEYFSCRYKYILQKSNEALTIESKGNKFEVYSMYKSXXXXXXXXXXXXXXXEQTSINSD 272
N ++F + +Y KSN+++ ++K + ++ T+ ++
Sbjct: 164 NDKFFFRKDRYSNIKSNKSIFSDNK--ILRCFRNFRKNTPDLFFLKNINKISNVTTYETN 221
Query: 273 ILKKMNNLKSLR--NNICECINRIEKENQNNELMVADLLYSIQSECQYTKIDSNEVFDIP 446
K NN K L+ N+ E +N +K ++ +++ +L SI + K + E+ P
Sbjct: 222 TFKDNNNKKHLKCVNSSLELLNS-KKNDKWKQVINHQILLSISN-----KENKAEISFTP 275
Query: 447 SYPGSLEIYKFPSNLKCSKGFIVVSDWIGVLISNETPIL 563
Y GS+ I N + + FI D + V + N P L
Sbjct: 276 EYLGSIHIKIKMRNDQATLNFISNHDEVKVFLKNCIPFL 314
>sp|Q86UK0|ABCAC_HUMAN ATP-binding cassette sub-family A member 12 (ATP-binding cassette
transporter 12) (ATP-binding cassette 12)
Length = 2595
Score = 30.8 bits (68), Expect = 4.0
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +3
Query: 264 NSDILKKMNNLKSLRNNICECI--NRIEKENQNNEL-MVADLLYSIQSECQYTKIDSNEV 434
N DI+ ++N L SL NI C+ +RI+ +E+ A LY SNE+
Sbjct: 904 NIDIIDQLNTLSSLTVNISSCVLYDRIQAAKTIDEMEREAKRLYK-----------SNEL 952
Query: 435 FDIPSYPGSLEIYKFPSNLKCSKGF 509
F GS+ I+K PSN +G+
Sbjct: 953 F------GSV-IFKLPSNRSWHRGY 970
>sp|Q9V496|APLP_DROME Apolipophorins precursor (Retinoid- and fatty acid-binding
glycoprotein) [Contains: Apolipophorin-2 (Apolipophorin
II) (ApoL2); Apolipophorin-1 (Apolipophorin I) (ApoL1)]
Length = 3351
Score = 30.4 bits (67), Expect = 5.3
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Frame = +3
Query: 273 ILKKMNNLKSLRNNICECINRIEKENQNNELMVADLLYSIQSECQYT-KIDSNEVFDIPS 449
ILK + N KSL N ++ ++N + VA L + +C+ T + S E+ +
Sbjct: 468 ILKGLGNAKSLSGNTVAALSECASTGRSNRIRVAALHAFSKVKCEETLQSKSLELLKNRN 527
Query: 450 YPGSLEIYKFPSNLKCSKGFIVVSDWIGVLISNET 554
L I + S + C V++ I ++++ET
Sbjct: 528 EDSELRIEAYLSAISCPNA--EVANQISEIVNSET 560
>sp|P98064|MASP1_MOUSE Complement-activating component of Ra-reactive factor precursor
(Ra-reactive factor serine protease p100) (RaRF)
(Mannan-binding lectin serine protease 1) [Contains:
Complement-activating component of Ra-reactive factor
heavy chain; Complement-activating component of
Ra-reactive factor light chain]
Length = 704
Score = 29.6 bits (65), Expect = 9.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 102 YFSCRYKYILQKSNEALTIESKGNKF 179
Y SCR+ YIL N +E GN F
Sbjct: 170 YCSCRFGYILHTDNRTCRVECSGNLF 195
>sp|O42649|SMC3_SCHPO Structural maintenance of chromosome 3 (Cohesin complex Psm3 subunit)
Length = 1194
Score = 29.6 bits (65), Expect = 9.0
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 261 INSDILKKMNNLKSLRNNICECINRIEKENQNNELMVA--DLLYSIQSEC 404
INS+I K N L+SL E RIE++ + NE A LL + + EC
Sbjct: 878 INSEISDKRNELESLEELQHEVATRIEQDAKINERNAAKRSLLLARKKEC 927
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,309,187
Number of Sequences: 369166
Number of extensions: 1347541
Number of successful extensions: 3101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3099
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6776504000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)