Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02125
(360 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00497|PUR1_BACSU Amidophosphoribosyltransferase precurs... 31 0.76
sp|O75886|STAM2_HUMAN Signal transducing adapter molecule 2... 31 0.99
sp|O08353|ILVB_METAO Probable acetolactate synthase large s... 31 0.99
sp|Q9Z826|Y526_CHLPN Hypothetical protein CPn0526/CP0226/CP... 30 1.7
sp|Q9WTR8|PHLPP_RAT PH domain leucine-rich repeat protein p... 30 2.2
sp|P49336|CDK8_HUMAN Cell division protein kinase 8 (Protei... 28 4.9
sp|Q8CHE4|PHLPP_MOUSE PH domain leucine-rich repeat protein... 28 6.4
sp|Q6ZUB1|CI079_HUMAN Protein C9orf79 28 6.4
sp|P41696|AZF1_YEAST Asparagine-rich zinc finger protein AZF1 28 8.4
sp|P02713|ACHG_CHICK Acetylcholine receptor protein, gamma ... 28 8.4
>sp|P00497|PUR1_BACSU Amidophosphoribosyltransferase precursor (Glutamine
phosphoribosylpyrophosphate amidotransferase) (ATASE)
(GPATase)
Length = 476
Score = 31.2 bits (69), Expect = 0.76
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +3
Query: 18 SQSLNKAFNNLPYDFAIRPSSPIYHLPPATKVQPLNIHPMQSNNNKMIFQDSHITSNPLS 197
S ++N++ ++ Y + RP S + +N+H + N KM+ Q+S + ++ ++
Sbjct: 239 SMNINRSICSMEYIYFSRPDS---------NIDGINVHSARKNLGKMLAQESAVEADVVT 289
Query: 198 SVDTSS 215
V SS
Sbjct: 290 GVPDSS 295
>sp|O75886|STAM2_HUMAN Signal transducing adapter molecule 2 (STAM-2)
Length = 525
Score = 30.8 bits (68), Expect = 0.99
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 30 NKAFNNLPYDFAIRPSSPIYHLPPATKVQPLNIHPMQSNNNKMIFQDSH 176
NK N P P H PPA+ P+ +P+QS+ + Q H
Sbjct: 362 NKLVNEAPVYSVYSKLHPPAHYPPASSGVPMQTYPVQSHGGNYMGQSIH 410
>sp|O08353|ILVB_METAO Probable acetolactate synthase large subunit (AHAS)
(Acetohydroxy-acid synthase large subunit) (ALS)
Length = 599
Score = 30.8 bits (68), Expect = 0.99
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Frame = +3
Query: 3 SQNKQSQSLNKAFN-NLPY--DFAIRPSSPIYHLPPATKVQPLNIHPMQSNNNKMI 161
S N+ +++L +A N + PY DFAI PSS + +PP K+ + I +Q + N+ I
Sbjct: 527 SPNEINEALKEAINCDEPYLLDFAIDPSSALSMVPPGAKLTNI-IDAVQEHPNEKI 581
>sp|Q9Z826|Y526_CHLPN Hypothetical protein CPn0526/CP0226/CPj0526/CpB0547
Length = 329
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 12 KQSQSLNKAFNNLPYDFAIRPSSPIYHLPPATKVQPLNIHPMQSNNNKMIFQD 170
K +++ A ++PY S + LP ++ P N+ P S +MIF D
Sbjct: 116 KSRRAILVAITSMPYSNLAALSDLVVILPSVAELDPFNLIPTNSTTCQMIFGD 168
>sp|Q9WTR8|PHLPP_RAT PH domain leucine-rich repeat protein phosphatase (Pleckstrin
homology domain containing family E protein 1)
(Suprachiasmatic nucleus circadian oscillatory protein)
Length = 1696
Score = 29.6 bits (65), Expect = 2.2
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 135 MQSNNNKMIFQDSHITSNPLSSVDTSSNCQVRMKKWLVEFRQI 263
+ +++N+++ D + N LS +D S NC + +W+ E R++
Sbjct: 840 LYASSNELVQLDVYPVPNYLSYMDVSRNCLESVPEWVCESRKL 882
>sp|P49336|CDK8_HUMAN Cell division protein kinase 8 (Protein kinase K35)
Length = 464
Score = 28.5 bits (62), Expect = 4.9
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +3
Query: 66 IRPSSPIYHLPPATKVQPLNIHPMQSNNNKMIFQDSHITSNPLSSVDTSSNCQVRMKK 239
++P S +HL L + P++ ++ QD + +PL + D + CQ+ K
Sbjct: 302 VKPDSKAFHLLQKL----LTMDPIKRITSEQAMQDPYFLEDPLPTSDVFAGCQIPYPK 355
>sp|Q8CHE4|PHLPP_MOUSE PH domain leucine-rich repeat protein phosphatase (Pleckstrin
homology domain containing family E protein 1)
(Suprachiasmatic nucleus circadian oscillatory protein)
Length = 1687
Score = 28.1 bits (61), Expect = 6.4
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +3
Query: 135 MQSNNNKMIFQDSHITSNPLSSVDTSSNCQVRMKKWLVEFRQI 263
+ +++N++ D + N LS +D S NC + +W+ E R++
Sbjct: 833 LYASSNELAQLDVYPVPNYLSYMDVSRNCLESVPEWVCESRKL 875
>sp|Q6ZUB1|CI079_HUMAN Protein C9orf79
Length = 1445
Score = 28.1 bits (61), Expect = 6.4
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = +3
Query: 3 SQNKQSQSLNKAFNNLPYDFAIRPSSPIYHLPPAT--KVQPLNIHPMQSNNN----KMIF 164
SQN S L+KA +LP + + SS + PP QP + P + I
Sbjct: 463 SQNAHSVPLDKASTSLPGEPEVEASSQLSQAPPQPHHMAQPQHFTPAWPQSQPPPLAEIQ 522
Query: 165 QDSHITSNPLSSVDTSSNCQVR 230
+H+ S P+ S+ SS Q+R
Sbjct: 523 TQAHL-SPPVPSLGCSSPPQIR 543
>sp|P41696|AZF1_YEAST Asparagine-rich zinc finger protein AZF1
Length = 914
Score = 27.7 bits (60), Expect = 8.4
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +3
Query: 75 SSPIYHLPPATKVQPLNIHPMQSNNNKMIFQDSHITSNPLSSVDTSSN 218
SSP H P +T + P +N N I DS NP ++D+SSN
Sbjct: 759 SSPENH-PASTILNP------NTNANNAIANDSENNGNPEGNIDSSSN 799
>sp|P02713|ACHG_CHICK Acetylcholine receptor protein, gamma subunit precursor
Length = 514
Score = 27.7 bits (60), Expect = 8.4
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +3
Query: 66 IRPSSPIYHLPPATKVQPLNIH----PMQSNNNKMIFQDSHITSNPLS 197
+ P IY LPPA +IH P N M+FQ ++N ++
Sbjct: 132 VYPDGSIYWLPPAIYRSSCSIHVTYFPFDWQNCTMVFQSQTYSANEIN 179
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,894,527
Number of Sequences: 369166
Number of extensions: 450085
Number of successful extensions: 937
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)