Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02120
(297 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24746|NEUR_DROVI Neuralized protein 56 2e-08
sp|P29503|NEUR_DROME Neuralized protein 56 2e-08
sp|O76050|NEUL1_HUMAN Neuralized-like protein 1 (h-neuraliz... 48 6e-06
sp|Q923S6|NEURL_MOUSE Neuralized-like protein 1 (m-neuraliz... 48 6e-06
sp|Q24307|IAP2_DROME Apoptosis 2 inhibitor (Inhibitor of ap... 38 0.008
sp|O10296|IAP1_NPVOP Apoptosis inhibitor 1 (IAP-1) 37 0.014
sp|P41435|IAP1_NPVAC Apoptosis inhibitor 1 (IAP-1) 37 0.018
sp|Q6UWE0|LRSM1_HUMAN Ubiquitin ligase protein LRSAM1 (Leuc... 36 0.024
sp|O15151|MDM4_HUMAN Mdm4 protein (p53-binding protein Mdm4... 35 0.040
sp|Q6TEM9|MYLIP_BRARE Ubiquitin ligase MYLIP (Myosin regula... 35 0.069
>sp|Q24746|NEUR_DROVI Neuralized protein
Length = 747
Score = 56.2 bits (134), Expect = 2e-08
Identities = 21/47 (44%), Positives = 34/47 (72%)
Frame = +1
Query: 16 DSLMYRCGHLCLCYPCSIQFRLNSNGGAMNCPVCRADVQEIIRVFTS 156
DS++Y CGH+C+CY C+I+ GG CP+CRA ++++IR +T+
Sbjct: 703 DSVLYMCGHMCMCYDCAIEQWRGVGGG--QCPLCRAVIRDVIRTYTT 747
>sp|P29503|NEUR_DROME Neuralized protein
Length = 754
Score = 56.2 bits (134), Expect = 2e-08
Identities = 21/47 (44%), Positives = 34/47 (72%)
Frame = +1
Query: 16 DSLMYRCGHLCLCYPCSIQFRLNSNGGAMNCPVCRADVQEIIRVFTS 156
DS++Y CGH+C+CY C+I+ GG CP+CRA ++++IR +T+
Sbjct: 710 DSVLYMCGHMCMCYDCAIEQWRGVGGG--QCPLCRAVIRDVIRTYTT 754
>sp|O76050|NEUL1_HUMAN Neuralized-like protein 1 (h-neuralized 1) (h-neu) (RING finger
protein 67)
Length = 574
Score = 48.1 bits (113), Expect = 6e-06
Identities = 17/47 (36%), Positives = 31/47 (65%)
Frame = +1
Query: 16 DSLMYRCGHLCLCYPCSIQFRLNSNGGAMNCPVCRADVQEIIRVFTS 156
D+++Y CGH+CLCY C ++ + + CP+CR +++II+ + S
Sbjct: 530 DTVIYTCGHMCLCYACGLRLKKALHA---CCPICRRPIKDIIKTYRS 573
>sp|Q923S6|NEURL_MOUSE Neuralized-like protein 1 (m-neuralized 1) (m-neu1)
Length = 574
Score = 48.1 bits (113), Expect = 6e-06
Identities = 17/47 (36%), Positives = 31/47 (65%)
Frame = +1
Query: 16 DSLMYRCGHLCLCYPCSIQFRLNSNGGAMNCPVCRADVQEIIRVFTS 156
D+++Y CGH+CLCY C ++ + + CP+CR +++II+ + S
Sbjct: 530 DTVIYTCGHMCLCYSCGLRLKKALHA---CCPICRRPIKDIIKTYRS 573
>sp|Q24307|IAP2_DROME Apoptosis 2 inhibitor (Inhibitor of apoptosis 2) (dIAP2) (DIAP)
(IAP homolog A) (IAP-like protein) (DILP)
Length = 498
Score = 37.7 bits (86), Expect = 0.008
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 34 CGHLCLCYPCSIQFRLNSNGGAMNCPVCRADVQEIIRVFTS 156
CGHL C C+ NCP+CRAD++ +R F S
Sbjct: 466 CGHLATCNQCA--------PSVANCPMCRADIKGFVRTFLS 498
>sp|O10296|IAP1_NPVOP Apoptosis inhibitor 1 (IAP-1)
Length = 275
Score = 37.0 bits (84), Expect = 0.014
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 16 DSLMYRCGHLCLCYPCSIQFRLNSNGGAMNCPVCRADVQEIIRVFTS 156
D+++ C H C+C C F L+ CP CR DV + I++F +
Sbjct: 236 DAVLLPCRHFCVCMQC--YFALDGK-----CPTCRQDVADFIKIFVT 275
>sp|P41435|IAP1_NPVAC Apoptosis inhibitor 1 (IAP-1)
Length = 286
Score = 36.6 bits (83), Expect = 0.018
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 16 DSLMYRCGHLCLCYPCSIQFRLNSNGGAMNCPVCRADVQEIIRVF 150
D+++ C H C+C C G CP CR DV + I++F
Sbjct: 247 DAVLMPCRHFCVCVQCYF-------GLDQKCPTCRQDVTDFIKIF 284
>sp|Q6UWE0|LRSM1_HUMAN Ubiquitin ligase protein LRSAM1 (Leucine-rich repeat and sterile
alpha motif containing 1) (Tsg101-associated ligase)
(hTAL)
Length = 723
Score = 36.2 bits (82), Expect = 0.024
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 22 LMYRCGHLCLCYPCSIQFRLNSNGGAMNCPVCRADVQEIIRVFTS 156
+ CGH+C C C R CP+CR D+ + +R++ S
Sbjct: 686 IFLNCGHVCCCQQCCQPLR--------TCPLCRQDIAQRLRIYHS 722
>sp|O15151|MDM4_HUMAN Mdm4 protein (p53-binding protein Mdm4) (Mdm2-like p53-binding
protein) (Mdmx protein) (Double minute 4 protein)
Length = 490
Score = 35.4 bits (80), Expect = 0.040
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 31 RCGHLCLCYPCSIQFRLNSNGGAMNCPVCRADVQEIIRVF 150
R GHL C+ C+ + + GA +CP+C+ ++Q +I+VF
Sbjct: 453 RTGHLVTCFHCARRLK---KAGA-SCPICKKEIQLVIKVF 488
>sp|Q6TEM9|MYLIP_BRARE Ubiquitin ligase MYLIP (Myosin regulatory light chain interacting
protein) (MIR)
Length = 472
Score = 34.7 bits (78), Expect = 0.069
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 16 DSLMYRCGHLCLCYPCSIQFRLNSNGGAMNCPVCRADVQEIIRVF 150
D+ CGH+ C C+ Q + +CPVCR++V+ + V+
Sbjct: 393 DAAFCPCGHMVCCQNCAAQLQ--------SCPVCRSEVEHVQHVY 429
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,947,802
Number of Sequences: 369166
Number of extensions: 630211
Number of successful extensions: 1823
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1807
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)