Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02117
(479 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y2K7|FXL11_HUMAN F-box/LRR-repeat protein 11 (F-box an... 42 0.001
sp|P59997|FXL11_MOUSE F-box/LRR-repeat protein 11 (F-box an... 41 0.002
sp|Q6P1G2|FXL10_MOUSE F-box/LRR-repeat protein 10 (F-box an... 40 0.002
sp|Q9UJT9|FBXL7_HUMAN F-box/LRR-repeat protein 7 (F-box and... 40 0.004
sp|Q9Z0Z3|SKP2_MOUSE S-phase kinase-associated protein 2 (F... 39 0.005
sp|Q8NHM5|FXL10_HUMAN F-box/LRR-repeat protein 10 (F-box an... 39 0.006
sp|Q8CDU4|FXL13_MOUSE F-box/LRR-repeat protein 13 (F-box an... 39 0.006
sp|Q6PB97|FXL19_MOUSE F-box/LRR-repeat protein 19 (F-box an... 38 0.014
sp|Q6PCT2|FXL19_HUMAN F-box/LRR-repeat protein 19 (F-box an... 38 0.014
sp|Q9UK96|FBX10_HUMAN F-box only protein 10 36 0.052
>sp|Q9Y2K7|FXL11_HUMAN F-box/LRR-repeat protein 11 (F-box and leucine-rich repeat protein
11) (F-box protein FBL7) (F-box protein Lilina)
Length = 1162
Score = 41.6 bits (96), Expect = 0.001
Identities = 30/115 (26%), Positives = 47/115 (40%)
Frame = +3
Query: 105 EIWIKIMIYLSHSELSRLQRTCRRIYSIGLDSQLWRSVTLFRHSNLTDYHIINIAQKKPK 284
E+W+ + YLS EL R C+ Y D +LW + L R + + I +++P
Sbjct: 896 EVWMSVFRYLSRRELCECMRVCKTWYKWCCDKRLWTKIDLSRCKAIVPQALSGIIKRQPV 955
Query: 285 ELHFKNCFGTSITLNGLKEMFKICGQGVEKLSFISCSTGALEGDHFLLLSADFCP 449
L T+I+ L + G++ L CS A+ LS CP
Sbjct: 956 SLDLS---WTNISKKQLTWLVNRL-PGLKDLLLAGCSWSAVSA-----LSTSSCP 1001
>sp|P59997|FXL11_MOUSE F-box/LRR-repeat protein 11 (F-box and leucine-rich repeat protein
11)
Length = 560
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/115 (26%), Positives = 47/115 (40%)
Frame = +3
Query: 105 EIWIKIMIYLSHSELSRLQRTCRRIYSIGLDSQLWRSVTLFRHSNLTDYHIINIAQKKPK 284
E+W+ + YLS EL R C+ Y D +LW + L R + + I +++P
Sbjct: 294 EVWMSVFRYLSRKELCECIRVCKTWYKWCCDKRLWTKIDLSRCKAIVPQALSGIIKRQPV 353
Query: 285 ELHFKNCFGTSITLNGLKEMFKICGQGVEKLSFISCSTGALEGDHFLLLSADFCP 449
L T+I+ L + G++ L CS A+ LS CP
Sbjct: 354 SLDLS---WTNISKKQLTWLVNRL-PGLKDLLLAGCSWSAVSA-----LSTSSCP 399
>sp|Q6P1G2|FXL10_MOUSE F-box/LRR-repeat protein 10 (F-box and leucine-rich repeat protein
10) (F-box protein FBL10)
Length = 1309
Score = 40.4 bits (93), Expect = 0.002
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +3
Query: 105 EIWIKIMIYLSHSELSRLQRTCRRIYSIGLDSQLWRSVTLFRHSNLTDYHIINIAQKKPK 284
E+W+ + YLSH +L R CR D +LW + L R ++T + I +++P
Sbjct: 1041 EVWMAVFSYLSHRDLCVCMRVCRTWNRWCCDKRLWTRIDLNRCKSITPLMLSGIIRRQPV 1100
Query: 285 EL 290
L
Sbjct: 1101 SL 1102
>sp|Q9UJT9|FBXL7_HUMAN F-box/LRR-repeat protein 7 (F-box and leucine-rich repeat protein
7) (F-box protein FBL6/FBL7)
Length = 491
Score = 39.7 bits (91), Expect = 0.004
Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Frame = +3
Query: 96 LPAEIWIKIMIYLSHSELSRLQRTCRRIYSIGLDSQLWRSVTLFRHSNLTDYHIINIAQK 275
LP ++I +L ++L R R CRR Y++ D +LWR++ L + D + + ++
Sbjct: 117 LPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRR 176
Query: 276 KPKELHFKNCFGTSITLNGLKEM-------FKICGQGVEKLSFISCSTGALEGDHFLLLS 434
++ ++T++G + + C + +L C + E +
Sbjct: 177 LCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEA---VFDV 233
Query: 435 ADFCPNVTHINAS 473
CPN+ H++ S
Sbjct: 234 VSLCPNLEHLDVS 246
>sp|Q9Z0Z3|SKP2_MOUSE S-phase kinase-associated protein 2 (F-box protein Skp2) (Cyclin
A/CDK2-associated protein p45) (F-box/WD-40 protein 1)
(FWD1)
Length = 424
Score = 39.3 bits (90), Expect = 0.005
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 84 NWQCLPAEIWIKIMIYLSHSELSRLQRTCRRIYSIGLDSQLWRSVTL 224
+W LP E+ + I L EL R+ C+R Y + LD LW+S+ L
Sbjct: 96 SWDSLPDELLLGIFSCLCLPELLRVSGVCKRWYRLSLDESLWQSLDL 142
>sp|Q8NHM5|FXL10_HUMAN F-box/LRR-repeat protein 10 (F-box and leucine-rich repeat protein
10) (F-box protein FBL10) (JEMMA protein) (CXXC finger
protein 2) (Protein containing CXXC domain 2)
Length = 1336
Score = 38.9 bits (89), Expect = 0.006
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 105 EIWIKIMIYLSHSELSRLQRTCRRIYSIGLDSQLWRSVTLFRHSNLTDYHIINIAQKKPK 284
E+W+ + YLSH +L R CR D +LW + L ++T + I +++P
Sbjct: 1068 EVWMAVFSYLSHQDLCVCMRVCRTWNRWCCDKRLWTRIDLNHCKSITPLMLSGIIRRQPV 1127
Query: 285 EL 290
L
Sbjct: 1128 SL 1129
>sp|Q8CDU4|FXL13_MOUSE F-box/LRR-repeat protein 13 (F-box and leucine-rich repeat protein
13)
Length = 790
Score = 38.9 bits (89), Expect = 0.006
Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 3/139 (2%)
Frame = +3
Query: 66 NSNVASNWQCLPAEIWIKIMIYLSHSELSRLQRTCRRIYSIGLDSQLWRSVTLFRHSNLT 245
N +A + LP + ++I +YL+ ++ R R ++ LW S+ N+
Sbjct: 233 NRRIAFDISVLPEQAILQIFLYLTFKDMMACSRVNRSWMAMIQRGSLWNSIDFSTVKNIA 292
Query: 246 DYHIINIAQK---KPKELHFKNCFGTSITLNGLKEMFKICGQGVEKLSFISCSTGALEGD 416
D ++ QK L+F+ C + TL + + +++L+ C + D
Sbjct: 293 DKCVVTTLQKWRLNVLRLNFRGCDFRTKTLKAVSHC-----KNLQELNVSDCQSFT---D 344
Query: 417 HFLLLSADFCPNVTHINAS 473
+ ++ CP V ++N S
Sbjct: 345 ESMRHISEGCPGVLYLNLS 363
>sp|Q6PB97|FXL19_MOUSE F-box/LRR-repeat protein 19 (F-box and leucine-rich repeat protein
19)
Length = 674
Score = 37.7 bits (86), Expect = 0.014
Identities = 25/100 (25%), Positives = 44/100 (44%)
Frame = +3
Query: 96 LPAEIWIKIMIYLSHSELSRLQRTCRRIYSIGLDSQLWRSVTLFRHSNLTDYHIINIAQK 275
LP W+++ +L EL R CR D +LW + L R +LT + + ++
Sbjct: 404 LPRAAWLRVFQHLGpreLCVCMRVCRTWSRWCYDKRLWPRMDLSRRKSLTPPMLSGVVRR 463
Query: 276 KPKELHFKNCFGTSITLNGLKEMFKICGQGVEKLSFISCS 395
+P+ L T ++ L + QG+++L CS
Sbjct: 464 QPRALDLS---WTGVSKKQLMWLLNRL-QGLQELVLSGCS 499
>sp|Q6PCT2|FXL19_HUMAN F-box/LRR-repeat protein 19 (F-box and leucine-rich repeat protein
19)
Length = 674
Score = 37.7 bits (86), Expect = 0.014
Identities = 25/100 (25%), Positives = 44/100 (44%)
Frame = +3
Query: 96 LPAEIWIKIMIYLSHSELSRLQRTCRRIYSIGLDSQLWRSVTLFRHSNLTDYHIINIAQK 275
LP W+++ +L EL R CR D +LW + L R +LT + + ++
Sbjct: 404 LPRAAWLRVFQHLGpreLCICMRVCRTWSRWCYDKRLWPRMDLSRRKSLTPPMLSGVVRR 463
Query: 276 KPKELHFKNCFGTSITLNGLKEMFKICGQGVEKLSFISCS 395
+P+ L T ++ L + QG+++L CS
Sbjct: 464 QPRALDLS---WTGVSKKQLMWLLNRL-QGLQELVLSGCS 499
>sp|Q9UK96|FBX10_HUMAN F-box only protein 10
Length = 954
Score = 35.8 bits (81), Expect = 0.052
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = +3
Query: 96 LPAEIWIKIMIYLSHSELSRLQRTCRRIYS--IGLDSQLWRSVTL----FRHSN 239
LP E+W I+ YL +L R CR Y + LDS WR + L RH N
Sbjct: 6 LPLELWRMILAYLHLPDLGRCSLVCRAWYELILSLDSTRWRQLCLGCTECRHPN 59
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,699,637
Number of Sequences: 369166
Number of extensions: 1045905
Number of successful extensions: 2671
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2671
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2822184570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)