Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02106
(681 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q66JS6|IF31_MOUSE Eukaryotic translation initiation fact... 39 0.010
sp|O75822|IF31_HUMAN Eukaryotic translation initiation fact... 39 0.013
sp|Q5R8D1|IF31_PONPY Eukaryotic translation initiation fact... 39 0.013
>sp|Q66JS6|IF31_MOUSE Eukaryotic translation initiation factor 3 subunit 1 (eIF-3 alpha)
Length = 263
Score = 39.3 bits (90), Expect = 0.010
Identities = 26/99 (26%), Positives = 45/99 (45%)
Frame = +2
Query: 236 LAKDIEYEIFKDSFACNNKTNSIVNGIDDIQVQTXXXXXXXXXXXXXXXXXXXXNPNYSM 415
L ++ + E+ K++F NN V GID + + + Y+
Sbjct: 128 LQEESDLELAKETFGVNNT----VYGIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYAS 183
Query: 416 FLENTFRDLVISSDVETLKKFSVMFSALANEKSKVQKNT 532
FLE RD+ IS +++ LKK + + L +EK K +K +
Sbjct: 184 FLEALVRDVCISLEIDDLKKITNSLTVLCSEKQKQEKQS 222
>sp|O75822|IF31_HUMAN Eukaryotic translation initiation factor 3 subunit 1 (eIF-3 alpha)
(eIF3 p35) (eIF3j)
Length = 258
Score = 38.9 bits (89), Expect = 0.013
Identities = 26/99 (26%), Positives = 45/99 (45%)
Frame = +2
Query: 236 LAKDIEYEIFKDSFACNNKTNSIVNGIDDIQVQTXXXXXXXXXXXXXXXXXXXXNPNYSM 415
L ++ + E+ K++F NN V GID + + + Y+
Sbjct: 123 LQEESDLELAKETFGVNNA----VYGIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYAS 178
Query: 416 FLENTFRDLVISSDVETLKKFSVMFSALANEKSKVQKNT 532
FLE RD+ IS +++ LKK + + L +EK K +K +
Sbjct: 179 FLEVLVRDVCISLEIDDLKKITNSLTVLCSEKQKQEKQS 217
>sp|Q5R8D1|IF31_PONPY Eukaryotic translation initiation factor 3 subunit 1 (eIF-3 alpha)
Length = 259
Score = 38.9 bits (89), Expect = 0.013
Identities = 26/99 (26%), Positives = 45/99 (45%)
Frame = +2
Query: 236 LAKDIEYEIFKDSFACNNKTNSIVNGIDDIQVQTXXXXXXXXXXXXXXXXXXXXNPNYSM 415
L ++ + E+ K++F NN V GID + + + Y+
Sbjct: 124 LQEESDLELAKETFGVNNT----VYGIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYAS 179
Query: 416 FLENTFRDLVISSDVETLKKFSVMFSALANEKSKVQKNT 532
FLE RD+ IS +++ LKK + + L +EK K +K +
Sbjct: 180 FLEVLVRDVCISLEIDDLKKITNSLTVLCSEKQKQEKQS 218
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,874,932
Number of Sequences: 369166
Number of extensions: 609727
Number of successful extensions: 1280
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)