Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02105
(356 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8K2I1|PFTB_MOUSE Protein farnesyltransferase beta subun... 67 2e-11
sp|Q02293|PFTB_RAT Protein farnesyltransferase beta subunit... 66 3e-11
sp|P49356|PFTB_HUMAN Protein farnesyltransferase beta subun... 66 3e-11
sp|P49355|PFTB_BOVIN Protein farnesyltransferase beta subun... 65 5e-11
sp|Q04903|PFTB_PEA Protein farnesyltransferase beta subunit... 65 6e-11
sp|Q38920|PFTB_ARATH Protein farnesyltransferase beta subun... 52 3e-07
sp|P22007|RAM1_YEAST Protein farnesyltransferase beta subun... 50 2e-06
sp|O13782|PFTB_SCHPO Protein farnesyltransferase beta subun... 46 3e-05
sp|O93830|BET2_CANAL Type II proteins geranylgeranyltransfe... 45 4e-05
sp|P41992|PFTB_CAEEL Probable protein farnesyltransferase b... 40 0.001
>sp|Q8K2I1|PFTB_MOUSE Protein farnesyltransferase beta subunit (CAAX farnesyltransferase
beta subunit) (RAS proteins prenyltransferase beta)
(FTase-beta)
Length = 437
Score = 66.6 bits (161), Expect = 2e-11
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 LFDINALEEYVIMCCQLLDPPFHNPNGGGMIDKPGKKSDPYHTCYALSGLSIAQSYEQLN 245
+F AL+EY++MCCQ GG++DKPGK D YHTCY LSGLSIAQ +
Sbjct: 329 MFHQQALQEYILMCCQC--------PAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGA 380
Query: 246 RFDDCDQF--NNDLEIIDPIFNVSKKSI 323
D N L+ P++N+ + +
Sbjct: 381 MLHDMVMGVPENVLQPTHPVYNIGPEKV 408
>sp|Q02293|PFTB_RAT Protein farnesyltransferase beta subunit (CAAX farnesyltransferase
beta subunit) (RAS proteins prenyltransferase beta)
(FTase-beta)
Length = 437
Score = 65.9 bits (159), Expect = 3e-11
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 LFDINALEEYVIMCCQLLDPPFHNPNGGGMIDKPGKKSDPYHTCYALSGLSIAQSYEQLN 245
+F AL+EY++MCCQ GG++DKPGK D YHTCY LSGLSIAQ +
Sbjct: 329 MFHQQALQEYILMCCQC--------PAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGA 380
Query: 246 RFDDCDQF--NNDLEIIDPIFNVSKKSI 323
D N L+ P++N+ +
Sbjct: 381 MLHDVVMGVPENVLQPTHPVYNIGPDKV 408
>sp|P49356|PFTB_HUMAN Protein farnesyltransferase beta subunit (CAAX farnesyltransferase
beta subunit) (RAS proteins prenyltransferase beta)
(FTase-beta)
Length = 437
Score = 65.9 bits (159), Expect = 3e-11
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 LFDINALEEYVIMCCQLLDPPFHNPNGGGMIDKPGKKSDPYHTCYALSGLSIAQSYEQLN 245
+F AL+EY++MCCQ GG++DKPGK D YHTCY LSGLSIAQ +
Sbjct: 329 MFHQQALQEYILMCCQC--------PAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGA 380
Query: 246 RFDD--CDQFNNDLEIIDPIFNVSKKSI 323
D N L+ P++N+ +
Sbjct: 381 MLHDVVLGVPENALQPTHPVYNIGPDKV 408
>sp|P49355|PFTB_BOVIN Protein farnesyltransferase beta subunit (CAAX farnesyltransferase
beta subunit) (RAS proteins prenyltransferase beta)
(FTase-beta)
Length = 437
Score = 65.1 bits (157), Expect = 5e-11
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 LFDINALEEYVIMCCQLLDPPFHNPNGGGMIDKPGKKSDPYHTCYALSGLSIAQSYEQLN 245
+F AL+EY++MCCQ GG++DKPGK D YHTCY LSGLSIAQ +
Sbjct: 329 MFHQQALQEYILMCCQCPT--------GGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGA 380
Query: 246 RFDD--CDQFNNDLEIIDPIFNVSKKSI 323
D N L+ P++N+ +
Sbjct: 381 MLHDVVLGVPENALQPTHPVYNIGPDKV 408
>sp|Q04903|PFTB_PEA Protein farnesyltransferase beta subunit (CAAX farnesyltransferase
beta subunit) (RAS proteins prenyltransferase beta)
(FTase-beta)
Length = 419
Score = 64.7 bits (156), Expect = 6e-11
Identities = 38/90 (42%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Frame = +3
Query: 60 KPLFDINALEEYVIMCCQLLDPPFHNPNGGGMIDKPGKKSDPYHTCYALSGLSIAQSYEQ 239
+PLF AL++Y+++C Q D GG+ DKPGK+ D YH+CY LSGLS+ Q Y
Sbjct: 324 EPLFHSIALQQYILLCSQEQD--------GGLRDKPGKRRDHYHSCYCLSGLSLCQ-YSW 374
Query: 240 LNRFDD-------CDQFNNDLEIIDPIFNV 308
R D ++N LE I P+FNV
Sbjct: 375 SKRPDSPPLPKVVMGPYSNLLEPIHPLFNV 404
>sp|Q38920|PFTB_ARATH Protein farnesyltransferase beta subunit (CAAX farnesyltransferase
beta subunit) (RAS proteins prenyltransferase beta)
(FTase-beta) (Enhanced response to abscisic acid 1)
Length = 404
Score = 52.4 bits (124), Expect = 3e-07
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +3
Query: 66 LFDINALEEYVIMCCQLLDPPFHNPNGGGMIDKPGKKSDPYHTCYALSGLSIAQ 227
+FD L+ YV++C ++ D GG DKP K D YHTCY LSGLS+AQ
Sbjct: 310 VFDSLGLQRYVLLCSKIPD--------GGFRDKPRKPRDFYHTCYCLSGLSVAQ 355
>sp|P22007|RAM1_YEAST Protein farnesyltransferase beta subunit (CAAX farnesyltransferase
beta subunit) (RAS proteins prenyltransferase beta)
(FTase-beta)
Length = 431
Score = 49.7 bits (117), Expect = 2e-06
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +3
Query: 69 FDINALEEYVIMCCQLLDPPFHNPNGGGMIDKPGKKSDPYHTCYALSGLSIAQS 230
F+ +AL +Y++ CCQ + P G+ DKPG SD YHT Y L GL++A+S
Sbjct: 330 FNKHALRDYILYCCQEKEQP-------GLRDKPGAHSDFYHTNYCLLGLAVAES 376
>sp|O13782|PFTB_SCHPO Protein farnesyltransferase beta subunit (CAAX farnesyltransferase
beta subunit) (RAS proteins prenyltransferase)
(FTase-beta)
Length = 382
Score = 45.8 bits (107), Expect = 3e-05
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 93 YVIMCCQLLDPPFHNPNGGGMIDKPGKKSDPYHTCYALSGL-SIAQSY 233
Y++ CCQ GG+ DKP K+ D YHTCY L GL SIA Y
Sbjct: 292 YILQCCQ--------STSGGLRDKPPKRPDQYHTCYCLLGLSSIAYDY 331
>sp|O93830|BET2_CANAL Type II proteins geranylgeranyltransferase beta subunit (Type II
protein geranyl-geranyltransferase beta subunit)
(GGTase-II-beta) (PGGT) (YPT1/SEC4 proteins
geranylgeranyltransferase beta subunit)
Length = 341
Score = 45.4 bits (106), Expect = 4e-05
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +3
Query: 72 DINALEEYVIMCCQLLDPPFHNPNGGGMIDKPGKKSDPYHTCYALSGLSI 221
D+ LE +++ C L GG D+PG ++D YHTC+A++GLS+
Sbjct: 270 DLKILENFILTCQDL--------ENGGFSDRPGNQTDVYHTCFAIAGLSL 311
>sp|P41992|PFTB_CAEEL Probable protein farnesyltransferase beta subunit (CAAX
farnesyltransferase beta subunit) (RAS proteins
prenyltransferase beta) (FTase-beta)
Length = 335
Score = 40.4 bits (93), Expect = 0.001
Identities = 23/84 (27%), Positives = 43/84 (51%)
Frame = +3
Query: 72 DINALEEYVIMCCQLLDPPFHNPNGGGMIDKPGKKSDPYHTCYALSGLSIAQSYEQLNRF 251
D +A+++++ C + GG D+PG +DP+HT + ++ LS+ F
Sbjct: 265 DSDAMKKFIYAC--------QDDETGGFADRPGDCADPFHTVFGIAALSL---------F 307
Query: 252 DDCDQFNNDLEIIDPIFNVSKKSI 323
D + LE +DPIF ++K+ +
Sbjct: 308 GD-----DTLESVDPIFCMTKRCL 326
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,163,195
Number of Sequences: 369166
Number of extensions: 764969
Number of successful extensions: 1839
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1832
length of database: 68,354,980
effective HSP length: 86
effective length of database: 52,467,770
effective search space used: 1678968640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)