Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02099
(380 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H2F5|EPC1_HUMAN Enhancer of polycomb homolog 1 32 0.34
sp|Q89AZ2|FLIP_BUCBP Flagellar biosynthetic protein fliP 31 1.0
sp|Q8L805|RL35_WHEAT 60S ribosomal protein L35 30 1.7
sp|Q8C9X6|EPC1_MOUSE Enhancer of polycomb homolog 1 29 3.8
sp|Q23622|TBX36_CAEEL Putative T-box protein 36 28 5.0
sp|P53066|YGZ2_YEAST Hypothetical ANK repeat-containing pro... 28 5.0
sp|Q8XHQ5|SYC_CLOPE Cysteinyl-tRNA synthetase (Cysteine--tR... 28 6.5
sp|P36591|DYR_SCHPO Dihydrofolate reductase 28 8.5
sp|P33248|TYB12_LATJA Thymosin beta-12 28 8.5
sp|Q9W7M8|TYB_BRARE Thymosin beta 28 8.5
>sp|Q9H2F5|EPC1_HUMAN Enhancer of polycomb homolog 1
Length = 836
Score = 32.3 bits (72), Expect = 0.34
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 66 VGKNVNKIEPVHVAVGTDITDPNSEEYKRIMSAIPSSPFAPTKLRSSQTHKPNQIPSKDE 245
+G N+ P VA I N+ R +SA+PSS KL ++ + +++PS
Sbjct: 751 IGNNIRLTVPSSVATVNSIAPINARHIPRTLSAVPSSAL---KLAAAANCQVSKVPSSSS 807
Query: 246 LD 251
+D
Sbjct: 808 VD 809
>sp|Q89AZ2|FLIP_BUCBP Flagellar biosynthetic protein fliP
Length = 360
Score = 30.8 bits (68), Expect = 1.0
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -2
Query: 169 GIADIIRLYSSELGSVISVPTAT*TGSILLTFLPT--*HSTSFIRLLIL 29
GI D+I SS+ G + S+P T LTF+PT TSF R++I+
Sbjct: 137 GIPDVISHTSSDGGQIWSIPIQTLVFITSLTFIPTVLLMMTSFSRIVIV 185
>sp|Q8L805|RL35_WHEAT 60S ribosomal protein L35
Length = 124
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Frame = +3
Query: 18 KSIDKINKRMKEVECHVGK-----------NVNKIEPVHVAVGTDITDPNSEEYKRIMSA 164
KS D + K++ E++ +G+ +N+I + ++ +T N+++ ++
Sbjct: 14 KSKDDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVINAKQRAQLRLF 73
Query: 165 IPSSPFAPTKLRSSQTHKPNQIPSKDE 245
+ +AP LR+ QT + S DE
Sbjct: 74 YKNKKYAPLDLRAKQTRAIRRRLSPDE 100
>sp|Q8C9X6|EPC1_MOUSE Enhancer of polycomb homolog 1
Length = 813
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +3
Query: 69 GKNVNKIEPVHVAVGTDITDPNSEEYKRIMSAIPSSPFAPTKLRSSQTHKPNQIPSKDEL 248
G N+ P V +T N+ R +SA+P S KL ++ + +++PS +
Sbjct: 729 GNNIRLTVPSSVPTVNSVTPINARHIPRTLSAVPPSAL---KLAAAANCQVSKVPSSSSV 785
Query: 249 D 251
D
Sbjct: 786 D 786
>sp|Q23622|TBX36_CAEEL Putative T-box protein 36
Length = 331
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 147 KRIMSAIPSSPFAPTKLRSSQTHKPNQIPS 236
K IMS + SSP +P+ L Q + P IPS
Sbjct: 241 KGIMSLLESSPSSPSYLYQYQYNSPQSIPS 270
>sp|P53066|YGZ2_YEAST Hypothetical ANK repeat-containing protein YGL242C
Length = 181
Score = 28.5 bits (62), Expect = 5.0
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +3
Query: 9 GALKSIDKINKRMKEVECHVGKNVNKIEPVHVAVGTDITDPNSEEY-KRIMSAIPSSPFA 185
G+ + +DKI + E+E +V+ P+HV V +P + R + + + P
Sbjct: 61 GSWEVLDKILDQDGEIEIDPQNDVDGDTPLHVTVRYSQEEPEHGTFIARNLIEVGADP-- 118
Query: 186 PTKLRSSQTHKPNQIPSKDELDQ 254
++R+ KP + DELD+
Sbjct: 119 --RVRNYNNQKPVDLVHGDELDE 139
>sp|Q8XHQ5|SYC_CLOPE Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 466
Score = 28.1 bits (61), Expect = 6.5
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +3
Query: 51 EVECHVGKNVNKIEPVHVAVGTDITDPNSEEYKRIMSAIPSSPFAPTKLRSSQTHKPNQI 230
E C K + + +H A G+D+ P+ E A+ PFA L S+ + N+
Sbjct: 207 ECSCMAKKLLGETIDIH-AGGSDLKFPHHENEIAQSEALTGEPFARYWLHSAFVNVNNEK 265
Query: 231 PSKDELDQYFTTNQM 275
SK L+ +FT ++
Sbjct: 266 MSK-SLNNFFTAREI 279
>sp|P36591|DYR_SCHPO Dihydrofolate reductase
Length = 461
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 9 GALKSIDKINKRMKEVECHVGKNVNKIEPVHVAVGTDITDPNSEEYKRIMSAI 167
G ++S +K+M V+ ++ K P V + DPN EE K+ ++A+
Sbjct: 12 GWIQSGPVFSKKMGSVQKYLSKYAELHFPTGPVVADEEADPNDEEEKKRLAAL 64
>sp|P33248|TYB12_LATJA Thymosin beta-12
Length = 43
Score = 27.7 bits (60), Expect = 8.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 180 FAPTKLRSSQTHKPNQIPSKDELDQ 254
F TKL+ ++T + N +PSK+ ++Q
Sbjct: 12 FDKTKLKKTETQEKNPLPSKETIEQ 36
>sp|Q9W7M8|TYB_BRARE Thymosin beta
Length = 45
Score = 27.7 bits (60), Expect = 8.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 180 FAPTKLRSSQTHKPNQIPSKDELDQ 254
F TKLR ++T + N +P+K+ ++Q
Sbjct: 13 FDKTKLRKTETQEKNPLPTKETIEQ 37
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,285,838
Number of Sequences: 369166
Number of extensions: 674063
Number of successful extensions: 1836
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1836
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)