Planaria EST Database


DrC_02099

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02099
         (380 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9H2F5|EPC1_HUMAN  Enhancer of polycomb homolog 1               32   0.34 
sp|Q89AZ2|FLIP_BUCBP  Flagellar biosynthetic protein fliP          31   1.0  
sp|Q8L805|RL35_WHEAT  60S ribosomal protein L35                    30   1.7  
sp|Q8C9X6|EPC1_MOUSE  Enhancer of polycomb homolog 1               29   3.8  
sp|Q23622|TBX36_CAEEL  Putative T-box protein 36                   28   5.0  
sp|P53066|YGZ2_YEAST  Hypothetical ANK repeat-containing pro...    28   5.0  
sp|Q8XHQ5|SYC_CLOPE  Cysteinyl-tRNA synthetase (Cysteine--tR...    28   6.5  
sp|P36591|DYR_SCHPO  Dihydrofolate reductase                       28   8.5  
sp|P33248|TYB12_LATJA  Thymosin beta-12                            28   8.5  
sp|Q9W7M8|TYB_BRARE  Thymosin beta                                 28   8.5  
>sp|Q9H2F5|EPC1_HUMAN Enhancer of polycomb homolog 1
          Length = 836

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 66  VGKNVNKIEPVHVAVGTDITDPNSEEYKRIMSAIPSSPFAPTKLRSSQTHKPNQIPSKDE 245
           +G N+    P  VA    I   N+    R +SA+PSS     KL ++   + +++PS   
Sbjct: 751 IGNNIRLTVPSSVATVNSIAPINARHIPRTLSAVPSSAL---KLAAAANCQVSKVPSSSS 807

Query: 246 LD 251
           +D
Sbjct: 808 VD 809
>sp|Q89AZ2|FLIP_BUCBP Flagellar biosynthetic protein fliP
          Length = 360

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 169 GIADIIRLYSSELGSVISVPTAT*TGSILLTFLPT--*HSTSFIRLLIL 29
           GI D+I   SS+ G + S+P  T      LTF+PT     TSF R++I+
Sbjct: 137 GIPDVISHTSSDGGQIWSIPIQTLVFITSLTFIPTVLLMMTSFSRIVIV 185
>sp|Q8L805|RL35_WHEAT 60S ribosomal protein L35
          Length = 124

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
 Frame = +3

Query: 18  KSIDKINKRMKEVECHVGK-----------NVNKIEPVHVAVGTDITDPNSEEYKRIMSA 164
           KS D + K++ E++  +G+            +N+I  +  ++   +T  N+++  ++   
Sbjct: 14  KSKDDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVINAKQRAQLRLF 73

Query: 165 IPSSPFAPTKLRSSQTHKPNQIPSKDE 245
             +  +AP  LR+ QT    +  S DE
Sbjct: 74  YKNKKYAPLDLRAKQTRAIRRRLSPDE 100
>sp|Q8C9X6|EPC1_MOUSE Enhancer of polycomb homolog 1
          Length = 813

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +3

Query: 69  GKNVNKIEPVHVAVGTDITDPNSEEYKRIMSAIPSSPFAPTKLRSSQTHKPNQIPSKDEL 248
           G N+    P  V     +T  N+    R +SA+P S     KL ++   + +++PS   +
Sbjct: 729 GNNIRLTVPSSVPTVNSVTPINARHIPRTLSAVPPSAL---KLAAAANCQVSKVPSSSSV 785

Query: 249 D 251
           D
Sbjct: 786 D 786
>sp|Q23622|TBX36_CAEEL Putative T-box protein 36
          Length = 331

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 147 KRIMSAIPSSPFAPTKLRSSQTHKPNQIPS 236
           K IMS + SSP +P+ L   Q + P  IPS
Sbjct: 241 KGIMSLLESSPSSPSYLYQYQYNSPQSIPS 270
>sp|P53066|YGZ2_YEAST Hypothetical ANK repeat-containing protein YGL242C
          Length = 181

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +3

Query: 9   GALKSIDKINKRMKEVECHVGKNVNKIEPVHVAVGTDITDPNSEEY-KRIMSAIPSSPFA 185
           G+ + +DKI  +  E+E     +V+   P+HV V     +P    +  R +  + + P  
Sbjct: 61  GSWEVLDKILDQDGEIEIDPQNDVDGDTPLHVTVRYSQEEPEHGTFIARNLIEVGADP-- 118

Query: 186 PTKLRSSQTHKPNQIPSKDELDQ 254
             ++R+    KP  +   DELD+
Sbjct: 119 --RVRNYNNQKPVDLVHGDELDE 139
>sp|Q8XHQ5|SYC_CLOPE Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
          Length = 466

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +3

Query: 51  EVECHVGKNVNKIEPVHVAVGTDITDPNSEEYKRIMSAIPSSPFAPTKLRSSQTHKPNQI 230
           E  C   K + +   +H A G+D+  P+ E       A+   PFA   L S+  +  N+ 
Sbjct: 207 ECSCMAKKLLGETIDIH-AGGSDLKFPHHENEIAQSEALTGEPFARYWLHSAFVNVNNEK 265

Query: 231 PSKDELDQYFTTNQM 275
            SK  L+ +FT  ++
Sbjct: 266 MSK-SLNNFFTAREI 279
>sp|P36591|DYR_SCHPO Dihydrofolate reductase
          Length = 461

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 9   GALKSIDKINKRMKEVECHVGKNVNKIEPVHVAVGTDITDPNSEEYKRIMSAI 167
           G ++S    +K+M  V+ ++ K      P    V  +  DPN EE K+ ++A+
Sbjct: 12  GWIQSGPVFSKKMGSVQKYLSKYAELHFPTGPVVADEEADPNDEEEKKRLAAL 64
>sp|P33248|TYB12_LATJA Thymosin beta-12
          Length = 43

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 180 FAPTKLRSSQTHKPNQIPSKDELDQ 254
           F  TKL+ ++T + N +PSK+ ++Q
Sbjct: 12  FDKTKLKKTETQEKNPLPSKETIEQ 36
>sp|Q9W7M8|TYB_BRARE Thymosin beta
          Length = 45

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 180 FAPTKLRSSQTHKPNQIPSKDELDQ 254
           F  TKLR ++T + N +P+K+ ++Q
Sbjct: 13  FDKTKLRKTETQEKNPLPTKETIEQ 37
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,285,838
Number of Sequences: 369166
Number of extensions: 674063
Number of successful extensions: 1836
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1836
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)