Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02098
(720 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VN14|CONT_DROME Contactin precursor 101 2e-21
sp|P28685|CNTN2_CHICK Contactin 2 precursor (Axonin-1) 94 4e-19
sp|Q61330|CNTN2_MOUSE Contactin 2 precursor (Axonin-1) (Axo... 89 2e-17
sp|P22063|CNTN2_RAT Contactin 2 precursor (Axonin-1) (Axona... 89 2e-17
sp|Q02246|CNTN2_HUMAN Contactin 2 precursor (Axonin-1) (Axo... 88 2e-17
sp|Q07409|CNTN3_MOUSE Contactin 3 precursor (Brain-derived ... 86 8e-17
sp|Q62682|CNTN3_RAT Contactin 3 precursor (Brain-derived im... 86 8e-17
sp|Q9P232|CNTN3_HUMAN Contactin 3 precursor (Brain-derived ... 86 8e-17
sp|Q8AXZ4|CNT1A_BRARE Contactin 1a precursor (Neural cell r... 86 1e-16
sp|Q7ZW34|CNTN5_BRARE Contactin 5 precursor 85 2e-16
>sp|Q9VN14|CONT_DROME Contactin precursor
Length = 1390
Score = 101 bits (251), Expect = 2e-21
Identities = 56/173 (32%), Positives = 85/173 (49%)
Frame = +1
Query: 139 RNQLSFSGLPANTNFRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXX 318
R Q L + + + A N G+G PS+PS ++ T P AP
Sbjct: 1007 RQQAEVVNLTPWSAYEFSVTAVNDLGIGTPSAPSPIYSTYEDKPYIAPRNVGGGGGKIGD 1066
Query: 319 LVIRWEPLLPLEQNGDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKD 498
L I W+PLLP EQ+ Y++ +K IEW S ++ + D +++P N
Sbjct: 1067 LTITWDPLLPQEQHSHGIHYKVFWKLKGAIEWAS-----DEIKKQDHMGVAVVNIPLNNY 1121
Query: 499 YIPFDVKVRAKNIMGPGPWSDVSTITSSSKLPSFAPQNIHANSFNSTAINVDW 657
Y ++VKV+A N +G GP S+++ I S+ +P APQ A ++NST NV W
Sbjct: 1122 YTEYEVKVQAINSVGKGPESEIAVIHSAEDMPQVAPQKPIALAYNSTCFNVTW 1174
Score = 43.1 bits (100), Expect = 7e-04
Identities = 41/171 (23%), Positives = 65/171 (38%), Gaps = 10/171 (5%)
Frame = +1
Query: 175 TNFRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWEPLLPLE 354
T + +++ A NS G G P S V + PQ AP + W+P+
Sbjct: 1123 TEYEVKVQAINSVGKG-PESEIAVIHSAEDMPQVAPQKPIALAYNSTCFNVTWQPIDMSR 1181
Query: 355 QN------GDNFEY-EIQYKESKEIEWISATG---FLNKSLENDKYLQVTLDLPANKDYI 504
+N G +Y + ++E + ++S T L L+ D Y
Sbjct: 1182 ENIRGKLIGHRLKYWKTTHQEEDSVYYLSRTTRNWALIVGLQPDTY-------------- 1227
Query: 505 PFDVKVRAKNIMGPGPWSDVSTITSSSKLPSFAPQNIHANSFNSTAINVDW 657
+ VKV A N G GP S+ + K P P ++H N + + V W
Sbjct: 1228 -YFVKVMAYNAAGEGPESERFEERTYRKAPQKPPSSVHVYGINPSTVRVVW 1277
>sp|P28685|CNTN2_CHICK Contactin 2 precursor (Axonin-1)
Length = 1036
Score = 94.0 bits (232), Expect = 4e-19
Identities = 66/236 (27%), Positives = 107/236 (45%)
Frame = +1
Query: 1 GYDHGSPILWYRLEVSKVDVQLEWIILLDKINKTSITPVNKQNNLVRNQLSFSGLPANTN 180
G+D+ SPI Y +E +L +K + PVN + N Q+ L +
Sbjct: 626 GFDNHSPIARYSIEART--------LLSNKWKQMRTNPVNIEGNAETAQVV--NLIPWMD 675
Query: 181 FRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWEPLLPLEQN 360
+ R+ A+N G+G+PS PS +T+ P AP L+I W P L QN
Sbjct: 676 YEFRVLASNILGVGEPSLPSSKIRTKEAAPTVAPSGLGGGGGAPNELIINWTPTLRDYQN 735
Query: 361 GDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYIPFDVKVRAKNIM 540
GD F Y + +++ W++A + + + L + Y PF+VK++A N
Sbjct: 736 GDGFGYILSFRKKGTQGWLTA------RVPHAESLHYVYRNESIGPYTPFEVKIKAYNRK 789
Query: 541 GPGPWSDVSTITSSSKLPSFAPQNIHANSFNSTAINVDWVAPAIGQGERTDTRLSY 708
G GP S + + S+ + P AP + A + S+ ++V W + QG+ T L Y
Sbjct: 790 GEGPESLTAIVYSAEEEPKVAPFRVTAKAVLSSEMDVSW--EPVEQGDMTGVLLGY 843
Score = 42.7 bits (99), Expect = 0.001
Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 4/176 (2%)
Frame = +1
Query: 175 TNFRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWEPLLPLE 354
T F +++ A N G G S + V+ + P+ AP + + WEP+ +
Sbjct: 777 TPFEVKIKAYNRKGEGPESLTAIVYSAEE-EPKVAPFRVTAKAVLSSEMDVSWEPVEQGD 835
Query: 355 QNGDNFEYEIQY----KESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYIPFDVKV 522
G YEI+Y + + + + G + + VT P K + V V
Sbjct: 836 MTGVLLGYEIRYWKDGDKEEAADRVRTAGLVTSA-------HVTGLNPNTK----YHVSV 884
Query: 523 RAKNIMGPGPWSDVSTITSSSKLPSFAPQNIHANSFNSTAINVDWVAPAIGQGERT 690
RA N G GP S + IT++ P P NI ST + + W P + Q + +
Sbjct: 885 RAYNRAGAGPPSPSTNITTTKPPPRRPPGNISWTLTGST-VTIKW-DPVVAQADES 938
Score = 40.4 bits (93), Expect = 0.005
Identities = 30/142 (21%), Positives = 61/142 (42%)
Frame = +1
Query: 157 SGLPANTNFRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWE 336
+GL NT + + + A N G G PS +++ T+ PP + P + I+W+
Sbjct: 872 TGLNPNTKYHVSVRAYNRAGAGPPSPSTNITTTK--PPPRRPPGNISWTLTGSTVTIKWD 929
Query: 337 PLLPLEQNGDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYIPFDV 516
P++ Y++ Y++ + T +L + +D+P +D+ V
Sbjct: 930 PVVAQADESAVTGYKMLYRQDSH---SAPTLYLAS--------KSRIDIPVPEDFTHAFV 978
Query: 517 KVRAKNIMGPGPWSDVSTITSS 582
++R G G ++V + +S
Sbjct: 979 QIRVTGPGGDGTPAEVHIVRNS 1000
>sp|Q61330|CNTN2_MOUSE Contactin 2 precursor (Axonin-1) (Axonal glycoprotein TAG-1)
(Transient axonal glycoprotein 1) (TAX-1)
Length = 1040
Score = 88.6 bits (218), Expect = 2e-17
Identities = 62/219 (28%), Positives = 98/219 (44%)
Frame = +1
Query: 1 GYDHGSPILWYRLEVSKVDVQLEWIILLDKINKTSITPVNKQNNLVRNQLSFSGLPANTN 180
G+D+ SPI Y L+ ++ +W + PVN + N Q+ GL +
Sbjct: 633 GFDNHSPIAKYTLQ-ARTPPSGKW-------KQVRTNPVNIEGNAETAQVL--GLMPWMD 682
Query: 181 FRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWEPLLPLEQN 360
+ R+ A+N G G+PS PS +T+ P AP L I W P+ QN
Sbjct: 683 YEFRVSASNILGTGEPSGPSSRIRTKEAVPSVAPSGLSGGGGAPGELTINWTPMSREYQN 742
Query: 361 GDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYIPFDVKVRAKNIM 540
GD F Y + ++ W +A + +Y + D + Y PF+VK+R+ N
Sbjct: 743 GDGFGYLLSFRRQGSSSWQTA----RVPGADTQYFVYSND--SIHPYTPFEVKIRSYNRR 796
Query: 541 GPGPWSDVSTITSSSKLPSFAPQNIHANSFNSTAINVDW 657
G GP S + + S+ + P AP + A +S+ +NV W
Sbjct: 797 GDGPESLTAIVYSAEEEPKVAPAKVWAKGSSSSEMNVSW 835
Score = 44.7 bits (104), Expect = 3e-04
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 2/180 (1%)
Frame = +1
Query: 175 TNFRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWEPLLPLE 354
T F +++ + N G G S + V+ + P+ AP + + WEP+L +
Sbjct: 784 TPFEVKIRSYNRRGDGPESLTAIVYSAEE-EPKVAPAKVWAKGSSSSEMNVSWEPVLQ-D 841
Query: 355 QNGDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYIPFDVKVRAKN 534
NG YEI+Y ++ + E A ++ D +VT P K + V VRA N
Sbjct: 842 MNGILLGYEIRYWKAGDKE---AAADRVRTAGLDSSARVTGLYPNTK----YHVTVRAYN 894
Query: 535 IMGPGPWSDVSTITSSSKLPSFAPQNIHANSFNSTAINVDW--VAPAIGQGERTDTRLSY 708
G GP S + + P P NI + +F+S+++++ W V P + T ++ Y
Sbjct: 895 RAGTGPASPSADAMTMKPPPRRPPGNI-SWTFSSSSLSLKWDPVVPLRNESTVTGYKMLY 953
Score = 38.1 bits (87), Expect = 0.024
Identities = 33/139 (23%), Positives = 61/139 (43%)
Frame = +1
Query: 157 SGLPANTNFRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWE 336
+GL NT + + + A N G G P+SPS T PP++ P L ++W+
Sbjct: 878 TGLYPNTKYHVTVRAYNRAGTG-PASPSADAMTMKPPPRRPPGNISWTFSSSS-LSLKWD 935
Query: 337 PLLPLEQNGDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYIPFDV 516
P++PL Y++ Y+ + T L+ + +N +++P +D V
Sbjct: 936 PVVPLRNESTVTGYKMLYQND-----LQPTPMLHLTSKN------WIEIPVPEDIGHALV 984
Query: 517 KVRAKNIMGPGPWSDVSTI 573
++R G G ++V +
Sbjct: 985 QIRTTGPGGDGIPAEVHIV 1003
>sp|P22063|CNTN2_RAT Contactin 2 precursor (Axonin-1) (Axonal glycoprotein TAG-1)
(Transient axonal glycoprotein 1) (TAX-1)
Length = 1040
Score = 88.6 bits (218), Expect = 2e-17
Identities = 62/219 (28%), Positives = 99/219 (45%)
Frame = +1
Query: 1 GYDHGSPILWYRLEVSKVDVQLEWIILLDKINKTSITPVNKQNNLVRNQLSFSGLPANTN 180
G+D+ SPI Y L+ ++ +W + PVN + N Q+ GL +
Sbjct: 633 GFDNHSPIAKYTLQ-ARTPPSGKW-------KQVRTNPVNIEGNAETAQVL--GLMPWMD 682
Query: 181 FRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWEPLLPLEQN 360
+ R+ A+N G G+PS PS +T+ P AP L+I W P+ QN
Sbjct: 683 YEFRVSASNILGTGEPSGPSSKIRTKEAVPSVAPSGLSGGGGAPGELIINWTPVSREYQN 742
Query: 361 GDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYIPFDVKVRAKNIM 540
GD F Y + ++ W +A + +Y D + + Y PF+VK+R+ N
Sbjct: 743 GDGFGYLLSFRRQGSSSWQTA----RVPGADAQYFVYGND--SIQPYTPFEVKIRSYNRR 796
Query: 541 GPGPWSDVSTITSSSKLPSFAPQNIHANSFNSTAINVDW 657
G GP S + + S+ + P AP + A +S+ +NV W
Sbjct: 797 GDGPESLTALVYSAEEEPRVAPAKVWAKGSSSSEMNVSW 835
Score = 42.7 bits (99), Expect = 0.001
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 2/180 (1%)
Frame = +1
Query: 175 TNFRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWEPLLPLE 354
T F +++ + N G G S + V+ + P+ AP + + WEP+L +
Sbjct: 784 TPFEVKIRSYNRRGDGPESLTALVYSAEE-EPRVAPAKVWAKGSSSSEMNVSWEPVLQ-D 841
Query: 355 QNGDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYIPFDVKVRAKN 534
NG YEI+Y ++ + E A ++ D +VT P K + V VRA N
Sbjct: 842 MNGILLGYEIRYWKAGDNE---AAADRVRTAGLDTSARVTGLNPNTK----YHVTVRAYN 894
Query: 535 IMGPGPWSDVSTITSSSKLPSFAPQNIHANSFNSTAINVDW--VAPAIGQGERTDTRLSY 708
G GP S + + P P NI + +F+S+++++ W V P + T ++ Y
Sbjct: 895 RAGTGPASPSADAMTVKPPPRRPPGNI-SWTFSSSSLSLKWDPVVPLRNESTVTGYKMLY 953
Score = 37.7 bits (86), Expect = 0.031
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = +1
Query: 157 SGLPANTNFRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWE 336
+GL NT + + + A N G G S +D +P P + P L ++W+
Sbjct: 878 TGLNPNTKYHVTVRAYNRAGTGPASPSADAMTVKP--PPRRPPGNISWTFSSSSLSLKWD 935
Query: 337 PLLPLEQNGDNFEYEIQYK 393
P++PL Y++ Y+
Sbjct: 936 PVVPLRNESTVTGYKMLYQ 954
>sp|Q02246|CNTN2_HUMAN Contactin 2 precursor (Axonin-1) (Axonal glycoprotein TAG-1)
(Transient axonal glycoprotein 1) (TAX-1)
Length = 1040
Score = 88.2 bits (217), Expect = 2e-17
Identities = 58/219 (26%), Positives = 92/219 (42%)
Frame = +1
Query: 1 GYDHGSPILWYRLEVSKVDVQLEWIILLDKINKTSITPVNKQNNLVRNQLSFSGLPANTN 180
G+D+ SPI Y L+ K + P N + N Q+ GL +
Sbjct: 631 GFDNHSPIAKYTLQARTPPA--------GKWKQVRTNPANIEGNAETAQVL--GLTPWMD 680
Query: 181 FRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWEPLLPLEQN 360
+ R+ A+N G G+PS PS +T+ P AP L++ W P+ QN
Sbjct: 681 YEFRVIASNILGTGEPSGPSSKIRTREAAPSVAPSGLSGGGGAPGELIVNWTPMSREYQN 740
Query: 361 GDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYIPFDVKVRAKNIM 540
GD F Y + ++ W +A + + + Y PF+VK+R+ N
Sbjct: 741 GDGFGYLLSFRRQGSTHWQTA------RVPGADAQYFVYSNESVRPYTPFEVKIRSYNRR 794
Query: 541 GPGPWSDVSTITSSSKLPSFAPQNIHANSFNSTAINVDW 657
G GP S + + S+ + P AP + A +S+ +NV W
Sbjct: 795 GDGPESLTALVYSAEEEPRVAPTKVWAKGVSSSEMNVTW 833
Score = 42.7 bits (99), Expect = 0.001
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 6/184 (3%)
Frame = +1
Query: 175 TNFRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWEPLLPLE 354
T F +++ + N G G S + V+ + P+ AP + + WEP+ +
Sbjct: 782 TPFEVKIRSYNRRGDGPESLTALVYSAEE-EPRVAPTKVWAKGVSSSEMNVTWEPVQQ-D 839
Query: 355 QNGDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYI----PFDVKV 522
NG YEI+Y ++ + K D+ LD A + + V V
Sbjct: 840 MNGILLGYEIRYWKAGD-----------KEAAADRVRTAGLDTSARVSGLHPNTKYHVTV 888
Query: 523 RAKNIMGPGPWSDVSTITSSSKLPSFAPQNIHANSFNSTAINVDW--VAPAIGQGERTDT 696
RA N G GP S + T+ P P NI + +F+S+++++ W V P + T
Sbjct: 889 RAYNRAGTGPASPSANATTMKPPPRRPPGNI-SWTFSSSSLSIKWDPVVPFRNESAVTGY 947
Query: 697 RLSY 708
++ Y
Sbjct: 948 KMLY 951
Score = 38.9 bits (89), Expect = 0.014
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Frame = +1
Query: 157 SGLPANTNFRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWE 336
SGL NT + + + A N G G P+SPS T PP++ P L I+W+
Sbjct: 876 SGLHPNTKYHVTVRAYNRAGTG-PASPSANATTMKPPPRRPPGNISWTFSSSS-LSIKWD 933
Query: 337 PLLPLEQNGDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYI---- 504
P++P Y++ Y +ND +L TL L K++I
Sbjct: 934 PVVPFRNESAVTGYKMLY-------------------QNDLHLTPTLHL-TGKNWIEIPV 973
Query: 505 PFDVKVRAKNIMGPGPWSD 561
P D+ I GP D
Sbjct: 974 PEDIGHALVQIRTTGPGGD 992
>sp|Q07409|CNTN3_MOUSE Contactin 3 precursor (Brain-derived immunoglobulin superfamily
protein 1) (BIG-1) (Plasmacytoma-associated neuronal
glycoprotein)
Length = 1028
Score = 86.3 bits (212), Expect = 8e-17
Identities = 50/159 (31%), Positives = 81/159 (50%)
Frame = +1
Query: 181 FRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWEPLLPLEQN 360
+ R+ A+N G G+PS PS+ +T+ P+ AP LVI W+P+ QN
Sbjct: 671 YEFRIVASNKIGGGEPSLPSEKVRTEEAAPEIAPSEVSGGGGSRSELVITWDPVPEELQN 730
Query: 361 GDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYIPFDVKVRAKNIM 540
G F Y + ++ WI + S +N +Y+ + + P++VKV N
Sbjct: 731 GGGFGYVVAFRPLGVTTWIQT---VVTSPDNPRYVFRNESI---VPFSPYEVKVGVYNNK 784
Query: 541 GPGPWSDVSTITSSSKLPSFAPQNIHANSFNSTAINVDW 657
G GP+S V+T+ S+ + P+ AP +I A+S +S+ I V W
Sbjct: 785 GEGPFSPVTTVFSAEEEPTVAPSHISAHSLSSSEIEVSW 823
Score = 34.3 bits (77), Expect = 0.34
Identities = 42/189 (22%), Positives = 71/189 (37%), Gaps = 2/189 (1%)
Frame = +1
Query: 97 KTSITPVNKQNNLVRNQLSFSGLPANTNFRLRLYAANSFGLGDPSSPSDVFKTQPIPPQK 276
+T +T + + RN+ P + +++ N+ G G S + VF + P
Sbjct: 750 QTVVTSPDNPRYVFRNESIVPFSP----YEVKVGVYNNKGEGPFSPVTTVFSAEE-EPTV 804
Query: 277 APXXXXXXXXXXXXLVIRWEPLLPLEQNGDNFEYEIQYKESKEIEWISATGFLNKSLEND 456
AP + + W + NG YE++Y + G +S
Sbjct: 805 APSHISAHSLSSSEIEVSWNTIPWKLSNGHLLGYEVRYWNN---------GGEEESSRKV 855
Query: 457 KYL--QVTLDLPANKDYIPFDVKVRAKNIMGPGPWSDVSTITSSSKLPSFAPQNIHANSF 630
K Q + L K + + VRA N G GP+S T+ PS P N+ N+
Sbjct: 856 KVAGNQTSAVLRGLKSNLAYYTAVRAYNSAGAGPFSATVNATTKKTPPSQPPGNVVWNA- 914
Query: 631 NSTAINVDW 657
T + ++W
Sbjct: 915 TDTKVLLNW 923
>sp|Q62682|CNTN3_RAT Contactin 3 precursor (Brain-derived immunoglobulin superfamily
protein 1) (BIG-1)
Length = 1028
Score = 86.3 bits (212), Expect = 8e-17
Identities = 50/159 (31%), Positives = 81/159 (50%)
Frame = +1
Query: 181 FRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWEPLLPLEQN 360
+ R+ A+N G G+PS PS+ +T+ P+ AP LVI W+P+ QN
Sbjct: 671 YEFRVVASNKIGGGEPSLPSEKVRTEEAAPEVAPSEVSGGGGSRSELVITWDPVPEELQN 730
Query: 361 GDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYIPFDVKVRAKNIM 540
G F Y + ++ WI + S +N +Y+ + + P++VKV N
Sbjct: 731 GGGFGYVVAFRPLGVTTWIQT---VVTSPDNPRYVFRNESI---VPFSPYEVKVGVYNNK 784
Query: 541 GPGPWSDVSTITSSSKLPSFAPQNIHANSFNSTAINVDW 657
G GP+S V+T+ S+ + P+ AP +I A+S +S+ I V W
Sbjct: 785 GEGPFSPVTTVFSAEEEPTVAPSHISAHSLSSSEIEVSW 823
Score = 37.0 bits (84), Expect = 0.053
Identities = 41/187 (21%), Positives = 70/187 (37%)
Frame = +1
Query: 97 KTSITPVNKQNNLVRNQLSFSGLPANTNFRLRLYAANSFGLGDPSSPSDVFKTQPIPPQK 276
+T +T + + RN+ P + +++ N+ G G S + VF + P
Sbjct: 750 QTVVTSPDNPRYVFRNESIVPFSP----YEVKVGVYNNKGEGPFSPVTTVFSAEE-EPTV 804
Query: 277 APXXXXXXXXXXXXLVIRWEPLLPLEQNGDNFEYEIQYKESKEIEWISATGFLNKSLEND 456
AP + + W + NG YE++Y W + + S
Sbjct: 805 APSHISAHSLSSSEIEVSWNTIPWKSSNGRLLGYEVRY-------WNNGGEEESSSKVKV 857
Query: 457 KYLQVTLDLPANKDYIPFDVKVRAKNIMGPGPWSDVSTITSSSKLPSFAPQNIHANSFNS 636
Q + L K + + VRA N G GP+S T+ PS P N+ N+
Sbjct: 858 AGNQTSAVLRGLKSNLAYYTAVRAYNTAGAGPFSATVNATTKKTPPSQPPGNVVWNA-TD 916
Query: 637 TAINVDW 657
T + ++W
Sbjct: 917 TKVLLNW 923
>sp|Q9P232|CNTN3_HUMAN Contactin 3 precursor (Brain-derived immunoglobulin superfamily
protein 1) (BIG-1) (Plasmacytoma-associated neuronal
glycoprotein)
Length = 1028
Score = 86.3 bits (212), Expect = 8e-17
Identities = 58/219 (26%), Positives = 102/219 (46%)
Frame = +1
Query: 1 GYDHGSPILWYRLEVSKVDVQLEWIILLDKINKTSITPVNKQNNLVRNQLSFSGLPANTN 180
G D+ SP++ Y ++ ++ + W ++T V + + + + L
Sbjct: 621 GKDNHSPVISYSIQ-ARTPFSVGW---------QTVTTVPEVIDGKTHTATVVELNPWVE 670
Query: 181 FRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWEPLLPLEQN 360
+ R+ A+N G G+PS PS+ +T+ P+ P LVI W+P+ QN
Sbjct: 671 YEFRVVASNKIGGGEPSLPSEKVRTEEAVPEVPPSEVNGGGGSRSELVITWDPVPEELQN 730
Query: 361 GDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYIPFDVKVRAKNIM 540
G+ F Y + ++ WI + S + +Y+ + Y P++VKV N
Sbjct: 731 GEGFGYVVAFRPLGVTTWIQT---VVTSPDTPRYVFRNESIVP---YSPYEVKVGVYNNK 784
Query: 541 GPGPWSDVSTITSSSKLPSFAPQNIHANSFNSTAINVDW 657
G GP+S V+T+ S+ + P+ AP + ANS +S+ I V W
Sbjct: 785 GEGPFSPVTTVFSAEEEPTVAPSQVSANSLSSSEIEVSW 823
Score = 35.8 bits (81), Expect = 0.12
Identities = 35/159 (22%), Positives = 60/159 (37%)
Frame = +1
Query: 181 FRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWEPLLPLEQN 360
+ +++ N+ G G S + VF + P AP + + W + N
Sbjct: 774 YEVKVGVYNNKGEGPFSPVTTVFSAEE-EPTVAPSQVSANSLSSSEIEVSWNTIPWKLSN 832
Query: 361 GDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYIPFDVKVRAKNIM 540
G YE++Y W + S + + L K + + VRA N
Sbjct: 833 GHLLGYEVRY-------WNGGGKEESSSKMKVAGNETSARLRGLKSNLAYYTAVRAYNSA 885
Query: 541 GPGPWSDVSTITSSSKLPSFAPQNIHANSFNSTAINVDW 657
G GP+S +T+ PS P N+ N+ T + ++W
Sbjct: 886 GAGPFSATVNVTTKKTPPSQPPGNVVWNA-TDTKVLLNW 923
>sp|Q8AXZ4|CNT1A_BRARE Contactin 1a precursor (Neural cell recognition molecule F11)
(F3/F11/contactin)
Length = 1032
Score = 85.9 bits (211), Expect = 1e-16
Identities = 66/233 (28%), Positives = 100/233 (42%)
Frame = +1
Query: 1 GYDHGSPILWYRLEVSKVDVQLEWIILLDKINKTSITPVNKQNNLVRNQLSFSGLPANTN 180
G D+ SPI Y +++ + Q +W + +PVN + N + L T
Sbjct: 640 GTDNLSPISRYTVQLRESAAQQDW-------RDAATSPVNVEGNA--EMATVVNLLPWTE 690
Query: 181 FRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWEPLLPLEQN 360
+ R+ A N+ G G PS PS T+ P AP L I W P+
Sbjct: 691 YEFRVIATNTLGTGPPSEPSPKTTTREARPIVAPSDIGGGGGTSRELTITWTPVQSQYYY 750
Query: 361 GDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYIPFDVKVRAKNIM 540
G NF Y I +K + EW+ T E KY+ +P + F+VK++A N
Sbjct: 751 GSNFGYIIAFKPHNDPEWLRVT---VTDPEAQKYVHKDPKIPPS---TRFEVKMKAFNSQ 804
Query: 541 GPGPWSDVSTITSSSKLPSFAPQNIHANSFNSTAINVDWVAPAIGQGERTDTR 699
G GP+S+ + I S+ +P+ AP A + ++T V WV + ER R
Sbjct: 805 GEGPFSNSAFIYSAQDVPAEAPIITEARALSATEAIVIWVPVQLPTVERYQVR 857
>sp|Q7ZW34|CNTN5_BRARE Contactin 5 precursor
Length = 1056
Score = 85.1 bits (209), Expect = 2e-16
Identities = 68/240 (28%), Positives = 102/240 (42%), Gaps = 4/240 (1%)
Frame = +1
Query: 1 GYDHGSPILWYRLEVSKVDVQLEWIILLDKINKTSITPVNKQNNLVRNQLSFSGLPANTN 180
G D+ SPI Y ++ ++ V L W + KT PV S + + N
Sbjct: 650 GVDNHSPITTYNVQ-ARSPVSLGWQTV-----KTDPDPVTGSME--------SAMAVDLN 695
Query: 181 ----FRLRLYAANSFGLGDPSSPSDVFKTQPIPPQKAPXXXXXXXXXXXXLVIRWEPLLP 348
+ R+ A NS G GDPS PS +T+ P AP LVI WEP+
Sbjct: 696 PWVEYEFRVVATNSIGTGDPSPPSRAVRTKEAVPSVAPANVRGGNGRRHELVISWEPVSE 755
Query: 349 LEQNGDNFEYEIQYKESKEIEWISATGFLNKSLENDKYLQVTLDLPANKDYIPFDVKVRA 528
QNG+ F Y + ++ + W + S ++ Y P PF+V+V
Sbjct: 756 EYQNGEGFGYIVAFRVNGTRGWKEK---MVTSADSTTYKYRDETFP---PLTPFEVRVGV 809
Query: 529 KNIMGPGPWSDVSTITSSSKLPSFAPQNIHANSFNSTAINVDWVAPAIGQGERTDTRLSY 708
N G GP+S+V T+ S+ P P + A + +S+ I V W P+ G G +S+
Sbjct: 810 YNNKGDGPFSEVVTVFSAEGEprePPSEVQAFAVSSSEIKVLWKPPSPGLGRPQGYEVSF 869
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,463,684
Number of Sequences: 369166
Number of extensions: 1709030
Number of successful extensions: 3541
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3475
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6413660220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)