Planaria EST Database


DrC_02097

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02097
         (179 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O95466|FMNL_HUMAN  Formin-like 1 protein (Formin-like pro...    38   0.006
sp|O88874|CCNK_MOUSE  Cyclin-K                                     37   0.011
sp|P48608|DIA_DROME  Diaphanous protein                            36   0.024
sp|O00401|WASL_HUMAN  Neural Wiskott-Aldrich syndrome protei...    36   0.031
sp|P21997|SSGP_VOLCA  Sulfated surface glycoprotein 185 prec...    36   0.031
sp|Q91YD9|WASL_MOUSE  Neural Wiskott-Aldrich syndrome protei...    36   0.031
sp|Q95107|WASL_BOVIN  Neural Wiskott-Aldrich syndrome protei...    36   0.031
sp|O08816|WASL_RAT  Neural Wiskott-Aldrich syndrome protein ...    36   0.031
sp|Q96RN5|PCQAP_HUMAN  Positive cofactor 2 glutamine/Q-rich-...    35   0.041
sp|Q01956|KCNC3_RAT  Potassium voltage-gated channel subfami...    35   0.053
>sp|O95466|FMNL_HUMAN Formin-like 1 protein (Formin-like protein) (Leukocyte formin)
           (CLL-associated antigen KW-13)
          Length = 1100

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
 Frame = -3

Query: 135 GECPSPLKVG*PQGFPSPDVV---KPRPGSAPHPPPYRANGGPAP---PPS 1
           G+ P+P   G P G PSPD+    +P PG+AP PPP    G P+P   PPS
Sbjct: 514 GDAPTP---GVPTGSPSPDLAPAAEPAPGAAPPPPP-PLPGLPSPQEAPPS 560

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 123 SPLKVG*PQGFPSPDVVKPRPGSAPHPPPYRANGGPAPPP 4
           +P   G P+  P+P +    P   P PPP     GP PPP
Sbjct: 565 APPLPGSPEPPPAPPLPGDLPPPPPPPPPPPGTDGPVPPP 604
>sp|O88874|CCNK_MOUSE Cyclin-K
          Length = 554

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -3

Query: 102 PQGFPSPDVVKPRPGSAPHPPPYRANGGPAPP 7
           P  FP P +  P PG  P PP Y  N  P PP
Sbjct: 465 PASFPPPTIPPPTPGYPPPPPTYNPNFPPPPP 496
>sp|P48608|DIA_DROME Diaphanous protein
          Length = 1091

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 20/44 (45%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -3

Query: 126 PSPLKVG*PQGFPSPDVVKPRPGSA---PHPPPYRANGGPAPPP 4
           P P   G   G P P    P PG A   P PPP    GGP PPP
Sbjct: 527 PPPPMPGRAGGGPPPPPPPPMPGRAGGPPPPPPPPGMGGPPPPP 570

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
 Frame = -3

Query: 102 PQGFPSPDVVKPRP----GSAPHPPPY----RANGGPAPPP 4
           P   P  ++  P P    G AP PPP     RA GGP PPP
Sbjct: 503 PNKLPKVNIPMPPPPPGGGGAPPPPPPPMPGRAGGGPPPPP 543

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
 Frame = -3

Query: 174 IAQPSSRATQRRKGECPSPLKVG*PQGFPSPDVVKPRPGSAPHPP-----PYRANGGPAP 10
           +A PS     +     P P   G     P P  +  R G  P PP     P RA G P P
Sbjct: 498 VAAPSPNKLPKVNIPMPPPPPGGGGAPPPPPPPMPGRAGGGPPPPPPPPMPGRAGGPPPP 557

Query: 9   PP 4
           PP
Sbjct: 558 PP 559
>sp|O00401|WASL_HUMAN Neural Wiskott-Aldrich syndrome protein (N-WASP)
          Length = 505

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 20/48 (41%), Positives = 21/48 (43%)
 Frame = -3

Query: 144 RRKGECPSPLKVG*PQGFPSPDVVKPRPGSAPHPPPYRANGGPAPPPS 1
           RR+   P P   G P     P    P   S P PPP R  G P PPPS
Sbjct: 273 RRQAPPPPPPSRGGP-----PPPPPPPHNSGPPPPPARGRGAPPPPPS 315

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = -3

Query: 126 PSPLKVG*PQGFPSPDVVKPRPGSAPHPPPYRANGGPAPPP 4
           PS    G P   P P V+   P + P PPP     GP PPP
Sbjct: 351 PSSAPSGPPP--PPPSVLGVGPVAPPPPPPPPPPPGPPPPP 389

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
 Frame = -3

Query: 126 PSPLKVG*PQGFPSPDVVKPRPG-----SAPHPPPYRANGGPAPPP 4
           P P + G P   P P    P P       AP PPP RA     PPP
Sbjct: 280 PPPSRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPP 325
>sp|P21997|SSGP_VOLCA Sulfated surface glycoprotein 185 precursor (SSG 185)
          Length = 485

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 20/54 (37%), Positives = 21/54 (38%)
 Frame = -3

Query: 165 PSSRATQRRKGECPSPLKVG*PQGFPSPDVVKPRPGSAPHPPPYRANGGPAPPP 4
           P   A+ R     PSP     P   PSP    P P   P PPP      P PPP
Sbjct: 233 PQPTASSRPPSPPPSPRPPSPPPPSPSPPPPPPPPPPPPPPPPPSPPPPPPPPP 286

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = -3

Query: 171 AQPSSRATQRRKGECPSPLKVG*PQGFPSPDVVKPRPGSAPHPPPYRANGGPAPPP 4
           ++P S     R    P P     P   P P    P P S P PPP      P PPP
Sbjct: 239 SRPPSPPPSPRPPSPPPPSPSPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPP 294

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = -3

Query: 102 PQGFPSPDV--VKPRPGSAPHPP---PYRANGGPAPPPS 1
           P G   P+V  + P P ++P PP   P  ++  P+PPPS
Sbjct: 209 PTGLSGPNVNPIGPAPNNSPLPPSPQPTASSRPPSPPPS 247

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = -3

Query: 126 PSPLKVG*PQGFPSPDVVKPRPGSAPHPPPYRANGGPAPPPS 1
           P P     P   PSP    P P   P PPP  +   P  PPS
Sbjct: 264 PPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPSPSPPRKPPS 305

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 17/58 (29%), Positives = 20/58 (34%)
 Frame = -3

Query: 177 PIAQPSSRATQRRKGECPSPLKVG*PQGFPSPDVVKPRPGSAPHPPPYRANGGPAPPP 4
           P  QP++ +        P P     P   P P    P P   P PP       P PPP
Sbjct: 231 PSPQPTASSRPPSPPPSPRPPSPPPPSPSPPPPPPPPPPPPPPPPPSPPPPPPPPPPP 288
>sp|Q91YD9|WASL_MOUSE Neural Wiskott-Aldrich syndrome protein (N-WASP)
          Length = 501

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 20/48 (41%), Positives = 21/48 (43%)
 Frame = -3

Query: 144 RRKGECPSPLKVG*PQGFPSPDVVKPRPGSAPHPPPYRANGGPAPPPS 1
           RR+   P P   G P     P    P   S P PPP R  G P PPPS
Sbjct: 270 RRQAPPPPPPSRGGP-----PPPPPPPHSSGPPPPPARGRGAPPPPPS 312

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
 Frame = -3

Query: 126 PSPLKVG*PQGFPSPDVVKPRPG-----SAPHPPPYRANGGPAPPP 4
           P P + G P   P P    P P       AP PPP RA     PPP
Sbjct: 277 PPPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPP 322

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 90  PSPDVVKPRPGSAPHPPPYRANGGPAPPP 4
           P P +    P   P PPP    G  APPP
Sbjct: 343 PPPALPSSAPSGPPPPPPPSMAGSTAPPP 371
>sp|Q95107|WASL_BOVIN Neural Wiskott-Aldrich syndrome protein (N-WASP)
          Length = 505

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 20/48 (41%), Positives = 21/48 (43%)
 Frame = -3

Query: 144 RRKGECPSPLKVG*PQGFPSPDVVKPRPGSAPHPPPYRANGGPAPPPS 1
           RR+   P P   G P     P    P   S P PPP R  G P PPPS
Sbjct: 273 RRQAPPPPPPSRGGP-----PPPPPPPHSSGPPPPPARGRGAPPPPPS 315

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
 Frame = -3

Query: 177 PIAQPSSRATQRRKGECPSPLKVG*PQGFPSPDVVKPRP----------GSAPHPPPYRA 28
           P   PS   T       PS   VG P   P P+ + P P          G  P PPP   
Sbjct: 310 PPPPPSRAPTAAPPPPPPSRPGVGAPP--PPPNRMYPPPLPALPSSAPSGPPPPPPPLSV 367

Query: 27  NGGPAPPP 4
           +G  APPP
Sbjct: 368 SGSVAPPP 375

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
 Frame = -3

Query: 126 PSPLKVG*PQGFPSPDVVKPRPG-----SAPHPPPYRANGGPAPPP 4
           P P + G P   P P    P P       AP PPP RA     PPP
Sbjct: 280 PPPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPP 325

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 99  QGFPSPDVVKPRPGSAPHPPPYRAN-GGPAPPPS 1
           +G P P   +    + P PPP R   G P PPP+
Sbjct: 307 RGAPPPPPSRAPTAAPPPPPPSRPGVGAPPPPPN 340
>sp|O08816|WASL_RAT Neural Wiskott-Aldrich syndrome protein (N-WASP)
          Length = 501

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 20/48 (41%), Positives = 21/48 (43%)
 Frame = -3

Query: 144 RRKGECPSPLKVG*PQGFPSPDVVKPRPGSAPHPPPYRANGGPAPPPS 1
           RR+   P P   G P     P    P   S P PPP R  G P PPPS
Sbjct: 270 RRQAPPPPPPSRGGP-----PPPPPPPHSSGPPPPPARGRGAPPPPPS 312

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 90  PSPDVVKPRPGSAPHPPPYRANGGPAPPP 4
           P P +    P   P PPP    G  APPP
Sbjct: 343 PPPALPSSAPSGPPPPPPLSMAGSTAPPP 371

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
 Frame = -3

Query: 126 PSPLKVG*PQGFPSPDVVKPRPG-----SAPHPPPYRANGGPAPPP 4
           P P + G P   P P    P P       AP PPP RA     PPP
Sbjct: 277 PPPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPP 322
>sp|Q96RN5|PCQAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associated protein (PC2
           glutamine/Q-rich-associated protein) (TPA-inducible gene
           1 protein) (TIG-1) (Activator-recruited cofactor 105 kDa
           component) (ARC105) (CTG repeat protein 7a)
          Length = 788

 Score = 35.4 bits (80), Expect = 0.041
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = -3

Query: 177 PIAQPSSRATQRRKGECPSPLKVG*PQGFPSPDVVKPRPGSAPHPPPYRANGGPAPPPS 1
           P+AQ S  +        P   +V  PQ  P P    P+PG     P    + GPAP PS
Sbjct: 421 PMAQVSQSSLPMLSSPSPGQ-QVQTPQSMPPPPQPSPQPGQPSSQPNSNVSSGPAPSPS 478
>sp|Q01956|KCNC3_RAT Potassium voltage-gated channel subfamily C member 3 (Voltage-gated
           potassium channel subunit Kv3.3) (KSHIIID)
          Length = 889

 Score = 35.0 bits (79), Expect = 0.053
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -3

Query: 174 IAQPSSRATQRRKGECPSPLKVG*PQGFPSPDVVKPRPGSAPHPPPYRANGGPAPPP 4
           +A    +  +++    P P + G      SP+  KP P   P P P+  +GG +PPP
Sbjct: 549 LAMAKQKLPKKKNKHIPRPPQPG------SPNYCKPDPPPPPPPHPHHGSGGISPPP 599
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,826,321
Number of Sequences: 369166
Number of extensions: 649567
Number of successful extensions: 7151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5942
length of database: 68,354,980
effective HSP length: 32
effective length of database: 62,443,460
effective search space used: 1685973420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)