Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02095
(779 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36079|YKI3_YEAST Hypothetical 23.7 kDa protein in MDH1-... 31 3.3
sp|Q9LZV6|WRK62_ARATH Probable WRKY transcription factor 62... 30 5.7
sp|O78431|YCX3_GUITH HYPOTHETICAL 30.1 KD PROTEIN (ORF252) 30 7.4
>sp|P36079|YKI3_YEAST Hypothetical 23.7 kDa protein in MDH1-VMA5 intergenic region
Length = 204
Score = 31.2 bits (69), Expect = 3.3
Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -3
Query: 651 LFRY-YIYLNIQAYIHAFIHLYLCVF 577
++RY YIY+ + Y+H +I++Y C +
Sbjct: 5 IYRYIYIYMYLYIYVHTYIYIYYCCY 30
>sp|Q9LZV6|WRK62_ARATH Probable WRKY transcription factor 62 (WRKY DNA-binding protein 62)
Length = 263
Score = 30.4 bits (67), Expect = 5.7
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = -1
Query: 164 GKEDTRTNGMDYHIHETKNPDGSATGFWNRYRERN*MQYFRNRFYDNCCY 15
G++ + DYH HE+ P W +Y ++ + R Y C Y
Sbjct: 88 GRKTSMAESSDYHRHESSTPIYHDGFLWRKYGQKQIKESEYQRSYYKCAY 137
>sp|O78431|YCX3_GUITH HYPOTHETICAL 30.1 KD PROTEIN (ORF252)
Length = 252
Score = 30.0 bits (66), Expect = 7.4
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 383 NNIYSSNGLLRKPNVFHFPFI---LNILFSHR*SLPNRF*VLKHQTFQTKPYFLPYFNSP 553
N+I+ S+ + P +F F LN L R V+K+ T FLPYFNS
Sbjct: 178 NSIFLSDSKIYHPQFINFNFWWQNLNQLVLRRIYSLYPIYVIKNNVLTTNYVFLPYFNSY 237
Query: 554 YLKMN 568
L+ N
Sbjct: 238 LLQSN 242
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,467,398
Number of Sequences: 369166
Number of extensions: 1307378
Number of successful extensions: 2247
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2243
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7308943600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)