Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02093
(829 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9EQM6|DGCR8_MOUSE DGCR8 protein (DiGeorge syndrome crit... 32 1.6
sp|Q8WYQ5|DGCR8_HUMAN DGCR8 protein (DiGeorge syndrome crit... 32 1.6
sp|P51375|GLTB_PORPU Ferredoxin-dependent glutamate synthas... 31 3.6
>sp|Q9EQM6|DGCR8_MOUSE DGCR8 protein (DiGeorge syndrome critical region 8 homolog) (Gy1)
Length = 773
Score = 32.3 bits (72), Expect = 1.6
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +1
Query: 673 GHPYAVGEGKTKKIAKQKAVLKHLEILIPGFSNKIQIGCSEKP 801
G Y G +KK+AK KA LEILIP F ++ EKP
Sbjct: 550 GVTYGSGTASSKKLAKNKAARATLEILIPDF---VKQTSEEKP 589
>sp|Q8WYQ5|DGCR8_HUMAN DGCR8 protein (DiGeorge syndrome critical region 8)
Length = 773
Score = 32.3 bits (72), Expect = 1.6
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +1
Query: 673 GHPYAVGEGKTKKIAKQKAVLKHLEILIPGFSNKIQIGCSEKP 801
G Y G +KK+AK KA LEILIP F ++ EKP
Sbjct: 550 GVTYGSGTASSKKLAKNKAARATLEILIPDF---VKQTSEEKP 589
>sp|P51375|GLTB_PORPU Ferredoxin-dependent glutamate synthase (Fd-GOGAT)
Length = 1538
Score = 31.2 bits (69), Expect = 3.6
Identities = 20/85 (23%), Positives = 41/85 (48%)
Frame = +2
Query: 440 DQVQPVVSNSNKEISVSPNCTEKLKIPNKNIYIDLAGRNFNCILNMYCQNAFSVTPTFKA 619
D+++P+ +NK+ S S N +++ + +GR+ L + AF P F
Sbjct: 294 DELKPI---TNKDNSDSANLDAAVEL------LIASGRSAEEALMILVPEAFQNQPEFNK 344
Query: 620 SSSLSGIHDF*GNLRNKWDTPMQLV 694
++ +S +++ L+ WD P +V
Sbjct: 345 NTEISDFYEYYSGLQEPWDGPALVV 369
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,413,300
Number of Sequences: 369166
Number of extensions: 1337407
Number of successful extensions: 3063
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3061
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)