Planaria EST Database


DrC_02093

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02093
         (829 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9EQM6|DGCR8_MOUSE  DGCR8 protein (DiGeorge syndrome crit...    32   1.6  
sp|Q8WYQ5|DGCR8_HUMAN  DGCR8 protein (DiGeorge syndrome crit...    32   1.6  
sp|P51375|GLTB_PORPU  Ferredoxin-dependent glutamate synthas...    31   3.6  
>sp|Q9EQM6|DGCR8_MOUSE DGCR8 protein (DiGeorge syndrome critical region 8 homolog) (Gy1)
          Length = 773

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = +1

Query: 673 GHPYAVGEGKTKKIAKQKAVLKHLEILIPGFSNKIQIGCSEKP 801
           G  Y  G   +KK+AK KA    LEILIP F   ++    EKP
Sbjct: 550 GVTYGSGTASSKKLAKNKAARATLEILIPDF---VKQTSEEKP 589
>sp|Q8WYQ5|DGCR8_HUMAN DGCR8 protein (DiGeorge syndrome critical region 8)
          Length = 773

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = +1

Query: 673 GHPYAVGEGKTKKIAKQKAVLKHLEILIPGFSNKIQIGCSEKP 801
           G  Y  G   +KK+AK KA    LEILIP F   ++    EKP
Sbjct: 550 GVTYGSGTASSKKLAKNKAARATLEILIPDF---VKQTSEEKP 589
>sp|P51375|GLTB_PORPU Ferredoxin-dependent glutamate synthase (Fd-GOGAT)
          Length = 1538

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 20/85 (23%), Positives = 41/85 (48%)
 Frame = +2

Query: 440 DQVQPVVSNSNKEISVSPNCTEKLKIPNKNIYIDLAGRNFNCILNMYCQNAFSVTPTFKA 619
           D+++P+   +NK+ S S N    +++      +  +GR+    L +    AF   P F  
Sbjct: 294 DELKPI---TNKDNSDSANLDAAVEL------LIASGRSAEEALMILVPEAFQNQPEFNK 344

Query: 620 SSSLSGIHDF*GNLRNKWDTPMQLV 694
           ++ +S  +++   L+  WD P  +V
Sbjct: 345 NTEISDFYEYYSGLQEPWDGPALVV 369
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,413,300
Number of Sequences: 369166
Number of extensions: 1337407
Number of successful extensions: 3063
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3061
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)