Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02087
(197 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47753|CAZA1_MOUSE F-actin capping protein alpha-1 subun... 75 6e-14
sp|P13127|CAZA1_CHICK F-actin capping protein alpha-1 subun... 71 7e-13
sp|P52907|CAZA1_HUMAN F-actin capping protein alpha-1 subun... 71 9e-13
sp|P25229|CAPZA_XENLA Actin-binding protein chain A (ABP-A) 69 4e-12
sp|Q5NVM0|CAZA1_PONPY F-actin capping protein alpha-1 subun... 69 4e-12
sp|P28497|CAZA2_CHICK F-actin capping protein alpha-2 subun... 67 1e-11
sp|P47755|CAZA2_HUMAN F-actin capping protein alpha-2 subun... 65 4e-11
sp|Q5R4P6|CAZA2_PONPY F-actin capping protein alpha-2 subun... 65 4e-11
sp|P47754|CAZA2_MOUSE F-actin capping protein alpha-2 subun... 65 6e-11
sp|Q9W2N0|CAPZA_DROME F-actin capping protein alpha subunit 65 6e-11
>sp|P47753|CAZA1_MOUSE F-actin capping protein alpha-1 subunit (CapZ alpha-1)
Length = 286
Score = 74.7 bits (182), Expect = 6e-14
Identities = 35/60 (58%), Positives = 45/60 (75%)
Frame = +2
Query: 17 FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASDVTQADV 196
FAQYN +QF VK+ + +VLIT++GDLGN RF DPR+Q+SF FDHL++ ASD DV
Sbjct: 54 FAQYNMDQFTPVKIEGYDDQVLITEHGDLGNSRFLDPRNQISFKFDHLRKEASDPQPEDV 113
>sp|P13127|CAZA1_CHICK F-actin capping protein alpha-1 subunit (CapZ 36/32) (Beta-actinin
subunit I)
Length = 286
Score = 71.2 bits (173), Expect = 7e-13
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +2
Query: 17 FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASDVTQAD 193
FAQYN +QF VK+ + +VLIT++GDLGN RF DPR+++SF FDHL++ ASD D
Sbjct: 54 FAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPED 112
>sp|P52907|CAZA1_HUMAN F-actin capping protein alpha-1 subunit (CapZ alpha-1)
Length = 286
Score = 70.9 bits (172), Expect = 9e-13
Identities = 32/54 (59%), Positives = 42/54 (77%)
Frame = +2
Query: 17 FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASD 178
FAQYN +QF VK+ +VLIT++GDLGN RF DPR+++SF FDHL++ ASD
Sbjct: 54 FAQYNMDQFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASD 107
>sp|P25229|CAPZA_XENLA Actin-binding protein chain A (ABP-A)
Length = 256
Score = 68.6 bits (166), Expect = 4e-12
Identities = 30/54 (55%), Positives = 42/54 (77%)
Frame = +2
Query: 17 FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASD 178
FAQYN +QF K+ + +VLIT++GDLGN RF DPR++++F FDHL++ ASD
Sbjct: 24 FAQYNMDQFTPAKIEGYDDQVLITEHGDLGNSRFLDPRNRITFKFDHLRKEASD 77
>sp|Q5NVM0|CAZA1_PONPY F-actin capping protein alpha-1 subunit (CapZ alpha-1)
Length = 286
Score = 68.6 bits (166), Expect = 4e-12
Identities = 32/60 (53%), Positives = 43/60 (71%)
Frame = +2
Query: 17 FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASDVTQADV 196
FA YN +QF VK+ +VLIT++GDLGN RF DPR+++SF FDHL++ ASD +V
Sbjct: 54 FALYNMDQFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASDPQPEEV 113
>sp|P28497|CAZA2_CHICK F-actin capping protein alpha-2 subunit (CapZ 36/32) (Beta-actinin
subunit I)
Length = 286
Score = 67.4 bits (163), Expect = 1e-11
Identities = 29/54 (53%), Positives = 43/54 (79%)
Frame = +2
Query: 17 FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASD 178
FAQYN +QF VK+ + +VLIT++GDLGN +F DP++++SF FDHL++ A+D
Sbjct: 54 FAQYNLDQFTPVKIDGYDEQVLITEHGDLGNGKFLDPKNKISFKFDHLRKEATD 107
>sp|P47755|CAZA2_HUMAN F-actin capping protein alpha-2 subunit (CapZ alpha-2)
Length = 286
Score = 65.5 bits (158), Expect = 4e-11
Identities = 29/60 (48%), Positives = 43/60 (71%)
Frame = +2
Query: 17 FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASDVTQADV 196
FAQYN +QF VK+ +VLIT++GDLGN +F DP++++ F FDHL++ A+D +V
Sbjct: 54 FAQYNLDQFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPCEV 113
>sp|Q5R4P6|CAZA2_PONPY F-actin capping protein alpha-2 subunit (CapZ alpha-2)
Length = 286
Score = 65.5 bits (158), Expect = 4e-11
Identities = 29/60 (48%), Positives = 43/60 (71%)
Frame = +2
Query: 17 FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASDVTQADV 196
FAQYN +QF VK+ +VLIT++GDLGN +F DP++++ F FDHL++ A+D +V
Sbjct: 54 FAQYNLDQFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPCEV 113
>sp|P47754|CAZA2_MOUSE F-actin capping protein alpha-2 subunit (CapZ alpha-2)
Length = 286
Score = 64.7 bits (156), Expect = 6e-11
Identities = 28/54 (51%), Positives = 41/54 (75%)
Frame = +2
Query: 17 FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASD 178
FAQYN +QF VK+ +VLIT++GDLGN +F DP++++ F FDHL++ A+D
Sbjct: 54 FAQYNLDQFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATD 107
>sp|Q9W2N0|CAPZA_DROME F-actin capping protein alpha subunit
Length = 286
Score = 64.7 bits (156), Expect = 6e-11
Identities = 26/54 (48%), Positives = 41/54 (75%)
Frame = +2
Query: 17 FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASD 178
FAQYNK+Q V++ ++ +I+++ DLGN RFYDPR++ +F +DHL++ ASD
Sbjct: 52 FAQYNKDQLTPVRIEGTDHNAIISEHNDLGNGRFYDPRTKQAFKYDHLRKEASD 105
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,331,200
Number of Sequences: 369166
Number of extensions: 318475
Number of successful extensions: 742
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 68,354,980
effective HSP length: 37
effective length of database: 61,519,785
effective search space used: 1722553980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)