Planaria EST Database


DrC_02087

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02087
         (197 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P47753|CAZA1_MOUSE  F-actin capping protein alpha-1 subun...    75   6e-14
sp|P13127|CAZA1_CHICK  F-actin capping protein alpha-1 subun...    71   7e-13
sp|P52907|CAZA1_HUMAN  F-actin capping protein alpha-1 subun...    71   9e-13
sp|P25229|CAPZA_XENLA  Actin-binding protein chain A (ABP-A)       69   4e-12
sp|Q5NVM0|CAZA1_PONPY  F-actin capping protein alpha-1 subun...    69   4e-12
sp|P28497|CAZA2_CHICK  F-actin capping protein alpha-2 subun...    67   1e-11
sp|P47755|CAZA2_HUMAN  F-actin capping protein alpha-2 subun...    65   4e-11
sp|Q5R4P6|CAZA2_PONPY  F-actin capping protein alpha-2 subun...    65   4e-11
sp|P47754|CAZA2_MOUSE  F-actin capping protein alpha-2 subun...    65   6e-11
sp|Q9W2N0|CAPZA_DROME  F-actin capping protein alpha subunit       65   6e-11
>sp|P47753|CAZA1_MOUSE F-actin capping protein alpha-1 subunit (CapZ alpha-1)
          Length = 286

 Score = 74.7 bits (182), Expect = 6e-14
 Identities = 35/60 (58%), Positives = 45/60 (75%)
 Frame = +2

Query: 17  FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASDVTQADV 196
           FAQYN +QF  VK+   + +VLIT++GDLGN RF DPR+Q+SF FDHL++ ASD    DV
Sbjct: 54  FAQYNMDQFTPVKIEGYDDQVLITEHGDLGNSRFLDPRNQISFKFDHLRKEASDPQPEDV 113
>sp|P13127|CAZA1_CHICK F-actin capping protein alpha-1 subunit (CapZ 36/32) (Beta-actinin
           subunit I)
          Length = 286

 Score = 71.2 bits (173), Expect = 7e-13
 Identities = 33/59 (55%), Positives = 44/59 (74%)
 Frame = +2

Query: 17  FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASDVTQAD 193
           FAQYN +QF  VK+   + +VLIT++GDLGN RF DPR+++SF FDHL++ ASD    D
Sbjct: 54  FAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPED 112
>sp|P52907|CAZA1_HUMAN F-actin capping protein alpha-1 subunit (CapZ alpha-1)
          Length = 286

 Score = 70.9 bits (172), Expect = 9e-13
 Identities = 32/54 (59%), Positives = 42/54 (77%)
 Frame = +2

Query: 17  FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASD 178
           FAQYN +QF  VK+     +VLIT++GDLGN RF DPR+++SF FDHL++ ASD
Sbjct: 54  FAQYNMDQFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASD 107
>sp|P25229|CAPZA_XENLA Actin-binding protein chain A (ABP-A)
          Length = 256

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 30/54 (55%), Positives = 42/54 (77%)
 Frame = +2

Query: 17  FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASD 178
           FAQYN +QF   K+   + +VLIT++GDLGN RF DPR++++F FDHL++ ASD
Sbjct: 24  FAQYNMDQFTPAKIEGYDDQVLITEHGDLGNSRFLDPRNRITFKFDHLRKEASD 77
>sp|Q5NVM0|CAZA1_PONPY F-actin capping protein alpha-1 subunit (CapZ alpha-1)
          Length = 286

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 32/60 (53%), Positives = 43/60 (71%)
 Frame = +2

Query: 17  FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASDVTQADV 196
           FA YN +QF  VK+     +VLIT++GDLGN RF DPR+++SF FDHL++ ASD    +V
Sbjct: 54  FALYNMDQFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASDPQPEEV 113
>sp|P28497|CAZA2_CHICK F-actin capping protein alpha-2 subunit (CapZ 36/32) (Beta-actinin
           subunit I)
          Length = 286

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 29/54 (53%), Positives = 43/54 (79%)
 Frame = +2

Query: 17  FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASD 178
           FAQYN +QF  VK+   + +VLIT++GDLGN +F DP++++SF FDHL++ A+D
Sbjct: 54  FAQYNLDQFTPVKIDGYDEQVLITEHGDLGNGKFLDPKNKISFKFDHLRKEATD 107
>sp|P47755|CAZA2_HUMAN F-actin capping protein alpha-2 subunit (CapZ alpha-2)
          Length = 286

 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 29/60 (48%), Positives = 43/60 (71%)
 Frame = +2

Query: 17  FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASDVTQADV 196
           FAQYN +QF  VK+     +VLIT++GDLGN +F DP++++ F FDHL++ A+D    +V
Sbjct: 54  FAQYNLDQFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPCEV 113
>sp|Q5R4P6|CAZA2_PONPY F-actin capping protein alpha-2 subunit (CapZ alpha-2)
          Length = 286

 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 29/60 (48%), Positives = 43/60 (71%)
 Frame = +2

Query: 17  FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASDVTQADV 196
           FAQYN +QF  VK+     +VLIT++GDLGN +F DP++++ F FDHL++ A+D    +V
Sbjct: 54  FAQYNLDQFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPCEV 113
>sp|P47754|CAZA2_MOUSE F-actin capping protein alpha-2 subunit (CapZ alpha-2)
          Length = 286

 Score = 64.7 bits (156), Expect = 6e-11
 Identities = 28/54 (51%), Positives = 41/54 (75%)
 Frame = +2

Query: 17  FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASD 178
           FAQYN +QF  VK+     +VLIT++GDLGN +F DP++++ F FDHL++ A+D
Sbjct: 54  FAQYNLDQFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATD 107
>sp|Q9W2N0|CAPZA_DROME F-actin capping protein alpha subunit
          Length = 286

 Score = 64.7 bits (156), Expect = 6e-11
 Identities = 26/54 (48%), Positives = 41/54 (75%)
 Frame = +2

Query: 17  FAQYNKEQFLQVKLPDKNYRVLITKYGDLGNDRFYDPRSQLSFSFDHLKRLASD 178
           FAQYNK+Q   V++   ++  +I+++ DLGN RFYDPR++ +F +DHL++ ASD
Sbjct: 52  FAQYNKDQLTPVRIEGTDHNAIISEHNDLGNGRFYDPRTKQAFKYDHLRKEASD 105
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,331,200
Number of Sequences: 369166
Number of extensions: 318475
Number of successful extensions: 742
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 68,354,980
effective HSP length: 37
effective length of database: 61,519,785
effective search space used: 1722553980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)