Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02084
(205 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62859|RS28_RAT 40S ribosomal protein S28 >gi|51316555|s... 83 2e-16
sp|Q962Q2|RS28_SPOFR 40S ribosomal protein S28 >gi|52000788... 80 1e-15
sp|Q90YP3|RS28_ICTPU 40S ribosomal protein S28 >gi|51316653... 80 1e-15
sp|Q9W334|RS28_DROME 40S ribosomal protein S28 78 7e-15
sp|Q95Y04|RS28_CAEEL 40S ribosomal protein S28 75 6e-14
sp|Q74ZD8|RS28_ASHGO 40S ribosomal protein S28 74 1e-13
sp|P33286|RS28_KLUMA 40S ribosomal protein S28 (S33) 73 2e-13
sp|P33285|RS28_KLULA 40S ribosomal protein S28 (S33) 73 2e-13
sp|Q6FLC3|RS28_CANGA 40S ribosomal protein S28 73 2e-13
sp|P02380|RS28_YEAST 40S ribosomal protein S28 (S33) (YS27) 72 4e-13
>sp|P62859|RS28_RAT 40S ribosomal protein S28
sp|Q6QAT1|RS28_PIG 40S ribosomal protein S28
sp|P62858|RS28_MOUSE 40S ribosomal protein S28
sp|P62857|RS28_HUMAN 40S ribosomal protein S28
Length = 69
Score = 82.8 bits (203), Expect = 2e-16
Identities = 37/49 (75%), Positives = 45/49 (91%)
Frame = +3
Query: 3 RVIAILGRTGSQGQCTQVRVEFLDETSRTLIRNVKGPVREGDILTFVRN 149
RV +LGRTGSQGQCTQVRVEF+D+TSR++IRNVKGPVREGD+LT + +
Sbjct: 13 RVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLES 61
>sp|Q962Q2|RS28_SPOFR 40S ribosomal protein S28
sp|Q6EV21|RS28_PAPDA 40S ribosomal protein S28
sp|Q6PS50|RS28_BOMMO 40S ribosomal protein S28
Length = 65
Score = 80.1 bits (196), Expect = 1e-15
Identities = 36/49 (73%), Positives = 44/49 (89%)
Frame = +3
Query: 3 RVIAILGRTGSQGQCTQVRVEFLDETSRTLIRNVKGPVREGDILTFVRN 149
RV+ +LGRTGSQGQCTQV+VEF+ ETSR +IRNVKGPVR+GDILT + +
Sbjct: 9 RVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILTLLES 57
>sp|Q90YP3|RS28_ICTPU 40S ribosomal protein S28
sp|Q6PBK3|RS28_BRARE 40S ribosomal protein S28
Length = 69
Score = 80.1 bits (196), Expect = 1e-15
Identities = 35/49 (71%), Positives = 45/49 (91%)
Frame = +3
Query: 3 RVIAILGRTGSQGQCTQVRVEFLDETSRTLIRNVKGPVREGDILTFVRN 149
RV +LGRTGSQGQCTQVRVEF+D+++R++IRNVKGPVREGD+LT + +
Sbjct: 13 RVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLES 61
>sp|Q9W334|RS28_DROME 40S ribosomal protein S28
Length = 65
Score = 77.8 bits (190), Expect = 7e-15
Identities = 36/49 (73%), Positives = 43/49 (87%)
Frame = +3
Query: 3 RVIAILGRTGSQGQCTQVRVEFLDETSRTLIRNVKGPVREGDILTFVRN 149
RV+ +LGRTGSQGQCTQV+VEFL E +R +IRNVKGPVREGDILT + +
Sbjct: 9 RVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDILTLLES 57
>sp|Q95Y04|RS28_CAEEL 40S ribosomal protein S28
Length = 65
Score = 74.7 bits (182), Expect = 6e-14
Identities = 35/50 (70%), Positives = 44/50 (88%), Gaps = 1/50 (2%)
Frame = +3
Query: 3 RVIAILGRTGSQGQCTQVRVEFL-DETSRTLIRNVKGPVREGDILTFVRN 149
RV ++GRTGSQGQCTQVRVEF+ D+ +R++IRNVKGPVREGDILT + +
Sbjct: 8 RVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILTLLES 57
>sp|Q74ZD8|RS28_ASHGO 40S ribosomal protein S28
Length = 67
Score = 73.6 bits (179), Expect = 1e-13
Identities = 34/49 (69%), Positives = 42/49 (85%)
Frame = +3
Query: 3 RVIAILGRTGSQGQCTQVRVEFLDETSRTLIRNVKGPVREGDILTFVRN 149
+VI +LGRTGS+G TQVRVEFLD+TSRT++RNVKGPVRE DIL + +
Sbjct: 11 KVIKVLGRTGSRGGVTQVRVEFLDDTSRTIVRNVKGPVRENDILVLMES 59
>sp|P33286|RS28_KLUMA 40S ribosomal protein S28 (S33)
Length = 67
Score = 73.2 bits (178), Expect = 2e-13
Identities = 33/49 (67%), Positives = 43/49 (87%)
Frame = +3
Query: 3 RVIAILGRTGSQGQCTQVRVEFLDETSRTLIRNVKGPVREGDILTFVRN 149
+VI +LGRTGS+G TQVRVEFL++T+RT++RNVKGPVREGDIL + +
Sbjct: 11 KVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMES 59
>sp|P33285|RS28_KLULA 40S ribosomal protein S28 (S33)
Length = 67
Score = 73.2 bits (178), Expect = 2e-13
Identities = 33/49 (67%), Positives = 43/49 (87%)
Frame = +3
Query: 3 RVIAILGRTGSQGQCTQVRVEFLDETSRTLIRNVKGPVREGDILTFVRN 149
+VI +LGRTGS+G TQVRVEFL++T+RT++RNVKGPVREGDIL + +
Sbjct: 11 KVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMES 59
>sp|Q6FLC3|RS28_CANGA 40S ribosomal protein S28
Length = 67
Score = 73.2 bits (178), Expect = 2e-13
Identities = 34/49 (69%), Positives = 42/49 (85%)
Frame = +3
Query: 3 RVIAILGRTGSQGQCTQVRVEFLDETSRTLIRNVKGPVREGDILTFVRN 149
RVI +LGRTGS+G TQVRVEFL++TSRT++RNVKGPVRE DIL + +
Sbjct: 11 RVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMES 59
>sp|P02380|RS28_YEAST 40S ribosomal protein S28 (S33) (YS27)
Length = 67
Score = 72.0 bits (175), Expect = 4e-13
Identities = 33/49 (67%), Positives = 42/49 (85%)
Frame = +3
Query: 3 RVIAILGRTGSQGQCTQVRVEFLDETSRTLIRNVKGPVREGDILTFVRN 149
+VI +LGRTGS+G TQVRVEFL++TSRT++RNVKGPVRE DIL + +
Sbjct: 11 KVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMES 59
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,887,704
Number of Sequences: 369166
Number of extensions: 226457
Number of successful extensions: 736
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 68,354,980
effective HSP length: 39
effective length of database: 61,150,315
effective search space used: 1712208820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)