Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02079
(825 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8VCM3|ZFY21_MOUSE Zinc finger FYVE domain-containing pr... 35 0.19
sp|Q9BQ24|ZFY21_HUMAN Zinc finger FYVE domain-containing pr... 32 2.1
sp|P07873|VMAT_PI3H4 Matrix protein 32 2.1
sp|Q6P8K8|CBPA4_MOUSE Carboxypeptidase A4 precursor 31 3.6
sp|Q9UI42|CBPA4_HUMAN Carboxypeptidase A4 precursor (Carbox... 31 3.6
sp|Q8L799|MIOX1_ARATH Inositol oxygenase 1 (Myo-inositol ox... 31 3.6
sp|Q9ESC1|ELTD1_RAT EGF, latrophilin and seven transmembran... 31 3.6
sp|Q923X1|ELTD1_MOUSE EGF, latrophilin seven transmembrane ... 31 3.6
sp|P06166|VMAT_PI3B Matrix protein 30 6.2
sp|P18015|COP_CLOPE Copy number protein (ORF4) 30 8.1
>sp|Q8VCM3|ZFY21_MOUSE Zinc finger FYVE domain-containing protein 21
Length = 234
Score = 35.4 bits (80), Expect = 0.19
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = +2
Query: 455 PQWRSDSFFPRCCHCDRNFQFYFVADIICRRCG 553
PQW D PRC CD F F CRRCG
Sbjct: 39 PQWVPDKECPRCMQCDAKFDF-ITRKHHCRRCG 70
>sp|Q9BQ24|ZFY21_HUMAN Zinc finger FYVE domain-containing protein 21
Length = 234
Score = 32.0 bits (71), Expect = 2.1
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +2
Query: 455 PQWRSDSFFPRCCHCDRNFQFYFVADIICRRCG 553
PQW D RC CD F F CRRCG
Sbjct: 39 PQWVPDKECRRCMQCDAKFDF-LTRKHHCRRCG 70
>sp|P07873|VMAT_PI3H4 Matrix protein
Length = 353
Score = 32.0 bits (71), Expect = 2.1
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -3
Query: 322 LVGKFVIKRKFCYPLI-LVSAINFWIICLFIGEIPTSAIF--SYPPQFYFYPKII 167
L + V KR+ CYPL+ L +N I + AIF S P +F +YP II
Sbjct: 288 LASQLVFKREICYPLMDLNPHLNLVIWASSVEITRVDAIFQPSLPGEFRYYPNII 342
>sp|Q6P8K8|CBPA4_MOUSE Carboxypeptidase A4 precursor
Length = 420
Score = 31.2 bits (69), Expect = 3.6
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 435 QVFNLVVRNGDQIRFFPDVVTAIEI-FNFISSPTSFVEDADIL 560
QVF + VRNGD+IR ++V + + + SP++F DIL
Sbjct: 25 QVFRINVRNGDEIRKLTELVNSDHLKLSVWKSPSTFDRPVDIL 67
>sp|Q9UI42|CBPA4_HUMAN Carboxypeptidase A4 precursor (Carboxypeptidase A3)
Length = 421
Score = 31.2 bits (69), Expect = 3.6
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 435 QVFNLVVRNGDQIRFFPDVVTAIEI-FNFISSPTSFVEDADIL 560
QV + VRNGD+I +V + + NF SP+SF D+L
Sbjct: 25 QVLRINVRNGDEISKLSQLVNSNNLKLNFWKSPSSFNRPVDVL 67
>sp|Q8L799|MIOX1_ARATH Inositol oxygenase 1 (Myo-inositol oxygenase 1) (AtMIOX1)
Length = 311
Score = 31.2 bits (69), Expect = 3.6
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -2
Query: 623 EMNSKALVKAKFRSPNTKLQKQNIRIFYK*CRRRNKIENFYRSDNIGEKTNLISIADDQI 444
E ++ ++ A F +P+T + R + RR +E FYR ++IG+ + + ++
Sbjct: 28 EEETELVLDAGFEAPHTNSFGRTFRDYDAESERRRGVEEFYRVNHIGQTVDFVRKMREEY 87
Query: 443 EYL 435
E L
Sbjct: 88 EKL 90
>sp|Q9ESC1|ELTD1_RAT EGF, latrophilin and seven transmembrane domain containing protein
1 precursor (EGF-TM7-latrophilin-related protein) (ETL
protein)
Length = 738
Score = 31.2 bits (69), Expect = 3.6
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -3
Query: 490 TSGKKRI*SPLRTTKLNT---CIYDLRRVLFNVLEVKLFKALHTTCAFW 353
+ GK+++ S + + +++ +Y+L ++ F + VKL T CAFW
Sbjct: 372 SKGKEKVISSVISASISSNPPTLYELEKITFTLSHVKLSDKHQTQCAFW 420
>sp|Q923X1|ELTD1_MOUSE EGF, latrophilin seven transmembrane domain containing protein 1
precursor
Length = 739
Score = 31.2 bits (69), Expect = 3.6
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -3
Query: 490 TSGKKRI*SPLRTTKLNT---CIYDLRRVLFNVLEVKLFKALHTTCAFW 353
+ GK+++ S + + +++ +Y+L ++ F + VKL T CAFW
Sbjct: 373 SEGKEKVISSVISASISSNPPTLYELEKITFTLSHVKLSDKHRTQCAFW 421
>sp|P06166|VMAT_PI3B Matrix protein
Length = 351
Score = 30.4 bits (67), Expect = 6.2
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -3
Query: 322 LVGKFVIKRKFCYPLI-LVSAINFWIICLFIGEIPTSAIF--SYPPQFYFYPKII 167
L + KR+ CYPL+ L +N I + AIF S P +F +YP II
Sbjct: 288 LASQLAFKREICYPLMDLNPHLNLVIWASSVEITRVDAIFQPSLPGEFRYYPNII 342
>sp|P18015|COP_CLOPE Copy number protein (ORF4)
Length = 198
Score = 30.0 bits (66), Expect = 8.1
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 682 KDLIFLFLDVELLITKYINLFVGFYL*YCCNINGNIFITICIYNLSLI 825
KDLIF L + L + +NL V F +N +IF+ + + NLS I
Sbjct: 8 KDLIFSILTI-LFVILCLNLIVFFSYNKAVEVNQSIFLMMLLLNLSFI 54
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,550,208
Number of Sequences: 369166
Number of extensions: 2079064
Number of successful extensions: 4919
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4916
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)