Planaria EST Database


DrC_02074

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02074
         (586 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q13563|PKD2_HUMAN  Polycystin-2 (Autosomal dominant polyc...    31   2.0  
sp|Q8R4D5|TCM8_MOUSE  Transient receptor potential cation ch...    30   3.4  
sp|Q7Z2W7|TCM8_HUMAN  Transient receptor potential cation ch...    30   4.4  
sp|Q15434|RBMS2_HUMAN  RNA-binding motif, single-stranded in...    30   5.8  
sp|P57240|SURA_BUCAI  Chaperone surA homolog precursor             30   5.8  
sp|Q8VGI5|OL481_MOUSE  Olfactory receptor 481 (Olfactory rec...    29   9.8  
sp|O61955|IF4E3_CAEEL  Eukaryotic translation initiation fac...    29   9.8  
sp|O35245|PKD2_MOUSE  Polycystin-2                                 29   9.8  
>sp|Q13563|PKD2_HUMAN Polycystin-2 (Autosomal dominant polycystic kidney disease type II
           protein) (Polycystwin) (R48321)
          Length = 968

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 568 TSLYYFFSDITIVLCFFVFYYIASDI 491
           T+  +F +   I+ CFF+FYY+  +I
Sbjct: 467 TTFDFFLAACEIIFCFFIFYYVVEEI 492
>sp|Q8R4D5|TCM8_MOUSE Transient receptor potential cation channel subfamily M member 8
          Length = 1104

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 520  FVFYYIASDIYFICCCSSSHYVPNVSCFININNCT 416
            F ++Y+     F CCC   +   N  CF N +N T
Sbjct: 1018 FAYFYMVVKKCFKCCCKEKNMESNACCFRNEDNET 1052
>sp|Q7Z2W7|TCM8_HUMAN Transient receptor potential cation channel subfamily M member 8
            (Transient receptor potential-p8) (Trp-p8) (Long
            transient receptor potential channel 6) (LTrpC6)
          Length = 1104

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 520  FVFYYIASDIYFICCCSSSHYVPNVSCFININNCT 416
            F ++Y+     F CCC   +   +V CF N +N T
Sbjct: 1018 FAYFYMVVKKCFKCCCKEKNMESSVCCFKNEDNET 1052
>sp|Q15434|RBMS2_HUMAN RNA-binding motif, single-stranded interacting protein 2
           (Suppressor of CDC2 with RNA-binding motif 3)
          Length = 407

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 454 PNVSCFININNCTTNVSCIIIPLPIHQDHHSKMFQVSSSTSTPGVSRNV 308
           P +S  ++     T  S + +P P    HHS + Q S S  TPG+   +
Sbjct: 281 PYLSSPVSSYQRVTQTSPLQVPNPSWMHHHSYLMQPSGSVLTPGMDHPI 329
>sp|P57240|SURA_BUCAI Chaperone surA homolog precursor
          Length = 430

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -1

Query: 529 LCFFVFYYIASDIYFICCCSSSHYVPNVSCFIN 431
           +C F+F+YI S I+++   + ++ V N++  +N
Sbjct: 3   ICIFIFFYIFSSIFYV--LAKNNQVDNITAIVN 33
>sp|Q8VGI5|OL481_MOUSE Olfactory receptor 481 (Olfactory receptor 204-2)
          Length = 312

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = -1

Query: 577 ICSTSLYYFFSDITIVLCFFVFYYIASDIYFICCCSSSHYVPNVSCFININNCTTN---- 410
           ICS  LY   + ++  +C F+        Y   C ++S +     CF+N+N C  N    
Sbjct: 126 ICSPLLYS--TQMSPAICCFLL----GASYLGGCMNASSFT---GCFVNLNFCGPNKVNH 176

Query: 409 VSCIIIPLPIHQDHHSKMFQVSSSTSTPGV 320
             C + PL      H+ + ++S S S+  V
Sbjct: 177 FFCDLFPLVKLSCGHAYIAEISPSISSASV 206
>sp|O61955|IF4E3_CAEEL Eukaryotic translation initiation factor 4E-3 (eIF4E-3) (eIF-4E-3)
           (mRNA cap-binding protein) (eIF-4F 25 kDa subunit)
          Length = 248

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 365 VMILMDWQRDDDA*NICGAVIDVDETGNIWDIMAG*ATADEVNI 496
           +M ++  Q D+    ICGAV++V + G+   +    AT D+VN+
Sbjct: 129 LMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNL 172
>sp|O35245|PKD2_MOUSE Polycystin-2
          Length = 966

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 568 TSLYYFFSDITIVLCFFVFYYIASDI 491
           T+  +F +   I+ CFF+ YY+  +I
Sbjct: 465 TAFDFFLAACEIIFCFFIIYYVVEEI 490
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,007,145
Number of Sequences: 369166
Number of extensions: 1238391
Number of successful extensions: 3265
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3264
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)