Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02074
(586 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13563|PKD2_HUMAN Polycystin-2 (Autosomal dominant polyc... 31 2.0
sp|Q8R4D5|TCM8_MOUSE Transient receptor potential cation ch... 30 3.4
sp|Q7Z2W7|TCM8_HUMAN Transient receptor potential cation ch... 30 4.4
sp|Q15434|RBMS2_HUMAN RNA-binding motif, single-stranded in... 30 5.8
sp|P57240|SURA_BUCAI Chaperone surA homolog precursor 30 5.8
sp|Q8VGI5|OL481_MOUSE Olfactory receptor 481 (Olfactory rec... 29 9.8
sp|O61955|IF4E3_CAEEL Eukaryotic translation initiation fac... 29 9.8
sp|O35245|PKD2_MOUSE Polycystin-2 29 9.8
>sp|Q13563|PKD2_HUMAN Polycystin-2 (Autosomal dominant polycystic kidney disease type II
protein) (Polycystwin) (R48321)
Length = 968
Score = 31.2 bits (69), Expect = 2.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 568 TSLYYFFSDITIVLCFFVFYYIASDI 491
T+ +F + I+ CFF+FYY+ +I
Sbjct: 467 TTFDFFLAACEIIFCFFIFYYVVEEI 492
>sp|Q8R4D5|TCM8_MOUSE Transient receptor potential cation channel subfamily M member 8
Length = 1104
Score = 30.4 bits (67), Expect = 3.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 520 FVFYYIASDIYFICCCSSSHYVPNVSCFININNCT 416
F ++Y+ F CCC + N CF N +N T
Sbjct: 1018 FAYFYMVVKKCFKCCCKEKNMESNACCFRNEDNET 1052
>sp|Q7Z2W7|TCM8_HUMAN Transient receptor potential cation channel subfamily M member 8
(Transient receptor potential-p8) (Trp-p8) (Long
transient receptor potential channel 6) (LTrpC6)
Length = 1104
Score = 30.0 bits (66), Expect = 4.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 520 FVFYYIASDIYFICCCSSSHYVPNVSCFININNCT 416
F ++Y+ F CCC + +V CF N +N T
Sbjct: 1018 FAYFYMVVKKCFKCCCKEKNMESSVCCFKNEDNET 1052
>sp|Q15434|RBMS2_HUMAN RNA-binding motif, single-stranded interacting protein 2
(Suppressor of CDC2 with RNA-binding motif 3)
Length = 407
Score = 29.6 bits (65), Expect = 5.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 454 PNVSCFININNCTTNVSCIIIPLPIHQDHHSKMFQVSSSTSTPGVSRNV 308
P +S ++ T S + +P P HHS + Q S S TPG+ +
Sbjct: 281 PYLSSPVSSYQRVTQTSPLQVPNPSWMHHHSYLMQPSGSVLTPGMDHPI 329
>sp|P57240|SURA_BUCAI Chaperone surA homolog precursor
Length = 430
Score = 29.6 bits (65), Expect = 5.8
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = -1
Query: 529 LCFFVFYYIASDIYFICCCSSSHYVPNVSCFIN 431
+C F+F+YI S I+++ + ++ V N++ +N
Sbjct: 3 ICIFIFFYIFSSIFYV--LAKNNQVDNITAIVN 33
>sp|Q8VGI5|OL481_MOUSE Olfactory receptor 481 (Olfactory receptor 204-2)
Length = 312
Score = 28.9 bits (63), Expect = 9.8
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = -1
Query: 577 ICSTSLYYFFSDITIVLCFFVFYYIASDIYFICCCSSSHYVPNVSCFININNCTTN---- 410
ICS LY + ++ +C F+ Y C ++S + CF+N+N C N
Sbjct: 126 ICSPLLYS--TQMSPAICCFLL----GASYLGGCMNASSFT---GCFVNLNFCGPNKVNH 176
Query: 409 VSCIIIPLPIHQDHHSKMFQVSSSTSTPGV 320
C + PL H+ + ++S S S+ V
Sbjct: 177 FFCDLFPLVKLSCGHAYIAEISPSISSASV 206
>sp|O61955|IF4E3_CAEEL Eukaryotic translation initiation factor 4E-3 (eIF4E-3) (eIF-4E-3)
(mRNA cap-binding protein) (eIF-4F 25 kDa subunit)
Length = 248
Score = 28.9 bits (63), Expect = 9.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 365 VMILMDWQRDDDA*NICGAVIDVDETGNIWDIMAG*ATADEVNI 496
+M ++ Q D+ ICGAV++V + G+ + AT D+VN+
Sbjct: 129 LMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNL 172
>sp|O35245|PKD2_MOUSE Polycystin-2
Length = 966
Score = 28.9 bits (63), Expect = 9.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 568 TSLYYFFSDITIVLCFFVFYYIASDI 491
T+ +F + I+ CFF+ YY+ +I
Sbjct: 465 TAFDFFLAACEIIFCFFIIYYVVEEI 490
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,007,145
Number of Sequences: 369166
Number of extensions: 1238391
Number of successful extensions: 3265
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3264
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)