Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02072
(714 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O75970|MPDZ_HUMAN Multiple PDZ domain protein (Multi PDZ... 31 3.7
sp|Q8K9A9|EX5B_BUCAP Exodeoxyribonuclease V beta chain 31 3.7
sp|Q8CQV3|TILS_STAES tRNA(Ile)-lysidine synthase (tRNA(Ile)... 31 3.7
sp|Q9HM28|Y042_THEAC Hypothetical UPF0215 protein Ta0042 30 6.4
>sp|O75970|MPDZ_HUMAN Multiple PDZ domain protein (Multi PDZ domain protein 1)
(Multi-PDZ-domain protein 1)
Length = 2042
Score = 30.8 bits (68), Expect = 3.7
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Frame = -2
Query: 686 IVIKSIVSHSFEQAVNIAKNN------ISKNKYCKNIYQRTLIRKWNINKYSVFIYQIFV 525
++++++ SFE+ +NIAK N +S NK + R++I I++ +I +
Sbjct: 995 VMLQNVSKESFERTINIAKGNSSLGMTVSANKDGLGMIVRSIIHGGAISRDG----RIAI 1050
Query: 524 TNCILSLQND 495
+CILS+ +
Sbjct: 1051 GDCILSINEE 1060
>sp|Q8K9A9|EX5B_BUCAP Exodeoxyribonuclease V beta chain
Length = 1179
Score = 30.8 bits (68), Expect = 3.7
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -2
Query: 656 FEQAVNIAKNNISKNKYCKNIYQRTLIRKWNINKYSVFIYQI 531
FE+ + + KNNIS+N+Y KN + +IR I+K Y I
Sbjct: 720 FEKKI-LEKNNISENEYIKNFAESKIIRIITIHKSKGLEYPI 760
>sp|Q8CQV3|TILS_STAES tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase)
sp|Q5HRP5|TILS_STAEQ tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase)
Length = 432
Score = 30.8 bits (68), Expect = 3.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 653 EQAVNIAKNNISKNKYCKNIYQRTLIRKWNINKYSVFIYQIF 528
EQA N +SK+KY + RT + N+N SV + +F
Sbjct: 228 EQAETFINNEVSKSKYLTYSFSRTAFNELNVNIKSVVMDLLF 269
>sp|Q9HM28|Y042_THEAC Hypothetical UPF0215 protein Ta0042
Length = 205
Score = 30.0 bits (66), Expect = 6.4
Identities = 17/73 (23%), Positives = 36/73 (49%)
Frame = +1
Query: 91 RIMGCKKPLEKEELQYDIENIRKQSMTVVINLGLVINLYKLSKLTRCWFDARKFFPYLFT 270
R+ G + +EKE++Q D +++ + + + G V + +S ++ F+
Sbjct: 55 RMDGYVEMMEKEKIQVDGDDVNRAIENLFLYTGRVARIIMMSGISFAGFNICDIDALYQR 114
Query: 271 LRTPVTMLRQQGG 309
+R PV + +QGG
Sbjct: 115 IRVPVISVFEQGG 127
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,054,851
Number of Sequences: 369166
Number of extensions: 1501725
Number of successful extensions: 4200
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4197
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6316483550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)