Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02071
(849 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O43900|LMO6_HUMAN LIM domain only protein 6 (Triple LIM ... 188 1e-47
sp|Q80VL3|LMO6_MOUSE LIM domain only protein 6 (Triple LIM ... 188 1e-47
sp|Q80Y24|PRIC2_MOUSE Prickle-like protein 2 174 2e-43
sp|Q9UGI8|TES_HUMAN Testin (TESS) 174 4e-43
sp|Q96MT3|PRIC1_HUMAN Prickle-like protein 1 (REST/NRSF-int... 163 6e-40
sp|P47226|TES_MOUSE Testin (TES1/TES2) 152 1e-36
sp|Q8VEE1|LMC1_MOUSE LIM and cysteine-rich domains protein 1 147 5e-35
sp|Q9NZU5|LMCD1_HUMAN LIM and cysteine-rich domains protein... 141 3e-33
sp|Q13643|FHL3_HUMAN Four and a half LIM domains protein 3 ... 73 9e-13
sp|O60711|LPXN_HUMAN Leupaxin 71 3e-12
>sp|O43900|LMO6_HUMAN LIM domain only protein 6 (Triple LIM domain protein 6)
Length = 615
Score = 188 bits (478), Expect = 1e-47
Identities = 103/285 (36%), Positives = 155/285 (54%), Gaps = 9/285 (3%)
Frame = +2
Query: 17 CVDKCRGFKIHGWRKTCLGCDCSVDRHDVTDESPLPI-LEEMK---LMDKPYYSLFMESL 184
C ++C GF +HGWRK C C C + H V +P+ LE + + D +S+ +
Sbjct: 30 CREQCPGFLLHGWRKICQHCKCpreEHAV---HAVPVDLERIMCRLISDFQRHSISDDDS 86
Query: 185 KMARKYGLSWLPIGLQASEVEQFTSIIGGN---IASRAGEKLRKQKLRRQIPVHDRCVEK 355
A + +W+P GL+ +V QF S + + + GEK R ++L Q+P HD +
Sbjct: 87 GCASEE-YAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHDSEAQY 145
Query: 356 FSHLETPTERQEAEKFLQFRNNQDLGVG--HVYRLDMAALPCTQCQSSVQAGQLAVRVEH 529
+ LE E++E F Q R ++LG G ++ + + C +C + G +AV
Sbjct: 146 CTALEEE-EKKELRAFSQQRKRENLGRGIVRIFPVTITGAICEECGKQIGGGDIAVFASR 204
Query: 530 AANSQMCWHPRCFKCTECDELLVDFIYCWYSNKPYCVRHYAQLIRPRCATCDELIFTEEY 709
A CWHP+CF CT C ELLVD IY ++ K YC RH+A+ +RPRC CDE+IF+ E
Sbjct: 205 AGLGA-CWHPQCFVCTTCQELLVDLIYFYHVGKVYCGRHHAECLRPRCQACDEIIFSPEC 263
Query: 710 TRAMEQEHHPAHFACKSCDNSLTGHRYILKDDQPLCIGCYESQYA 844
T A + H HF C C+ SL G RY+++ +P C CYE+++A
Sbjct: 264 TEAEGRHWHMDHFCCFECEASLGGQRYVMRQSRPHCCACYEARHA 308
>sp|Q80VL3|LMO6_MOUSE LIM domain only protein 6 (Triple LIM domain protein 6)
Length = 624
Score = 188 bits (478), Expect = 1e-47
Identities = 101/282 (35%), Positives = 152/282 (53%), Gaps = 6/282 (2%)
Frame = +2
Query: 17 CVDKCRGFKIHGWRKTCLGCDCSVDRHDV-TDESPLPILEEMKLMDKPYYSLFMESLKMA 193
C ++C GF +HGWRK C C C + H V T L + + D +S+ + A
Sbjct: 30 CREQCPGFLLHGWRKICQHCKCpreEHAVRTVPVDLERIMCRLISDFQRHSISDDDSGCA 89
Query: 194 RKYGLSWLPIGLQASEVEQFTSIIGGN---IASRAGEKLRKQKLRRQIPVHDRCVEKFSH 364
+ +W+P GL+ +V QF S + + + GEK R ++L Q+P HD + +
Sbjct: 90 SEE-YAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHDSEAQYCTA 148
Query: 365 LETPTERQEAEKFLQFRNNQDLGVG--HVYRLDMAALPCTQCQSSVQAGQLAVRVEHAAN 538
LE E++E F Q R ++LG ++ + + C +C + G +AV A
Sbjct: 149 LEEE-EKKELRAFSQQRKRENLGRATVRIFPVTITGAICEECGKQIGGGDIAVFASRAGL 207
Query: 539 SQMCWHPRCFKCTECDELLVDFIYCWYSNKPYCVRHYAQLIRPRCATCDELIFTEEYTRA 718
CWHP+CF CT C ELLVD IY +++ K YC RH+A+ +RPRC CDE+IF+ E T A
Sbjct: 208 GA-CWHPQCFVCTTCQELLVDLIYFYHAGKVYCGRHHAECLRPRCQACDEIIFSPECTEA 266
Query: 719 MEQEHHPAHFACKSCDNSLTGHRYILKDDQPLCIGCYESQYA 844
+ H HF C C+ SL G RY+++ +P C CYE+++A
Sbjct: 267 EGRHWHMGHFCCFECEASLGGQRYVMRQSRPHCCACYEARHA 308
>sp|Q80Y24|PRIC2_MOUSE Prickle-like protein 2
Length = 845
Score = 174 bits (442), Expect = 2e-43
Identities = 88/217 (40%), Positives = 127/217 (58%), Gaps = 5/217 (2%)
Frame = +2
Query: 209 SWLPIGLQASEVEQFTSIIGGN---IASRAGEKLRKQKLRRQIPVHDRCVEKFSHLETPT 379
+W+P GL+ +V Q+ S + + AGEKLR ++L Q+P HD V + L+
Sbjct: 38 AWVPPGLKPEQVHQYYSCLPEEKVPYVNSAGEKLRIKQLLHQLPPHDNEVRYCNSLDEE- 96
Query: 380 ERQEAEKFLQFRNNQDLGVGHV--YRLDMAALPCTQCQSSVQAGQLAVRVEHAANSQMCW 553
E++E + F R ++LG G+V + + M C QC ++ G +AV A + +CW
Sbjct: 97 EKRELKLFSNQRKRENLGRGNVRPFPVTMTGAICEQCGGQIKGGDIAVFASRAGHG-ICW 155
Query: 554 HPRCFKCTECDELLVDFIYCWYSNKPYCVRHYAQLIRPRCATCDELIFTEEYTRAMEQEH 733
HP CF CT C+ELLVD IY + K YC RH+A+ ++PRCA CDE+IF +E T A +
Sbjct: 156 HPPCFVCTVCNELLVDLIYFYQDGKIYCGRHHAECLKPRCAACDEIIFADECTEAEGRHW 215
Query: 734 HPAHFACKSCDNSLTGHRYILKDDQPLCIGCYESQYA 844
H HF C C+ L G RYI+K+ +P C C+ES YA
Sbjct: 216 HMRHFCCFECETVLGGQRYIMKEGRPYCCHCFESLYA 252
>sp|Q9UGI8|TES_HUMAN Testin (TESS)
Length = 421
Score = 174 bits (440), Expect = 4e-43
Identities = 107/336 (31%), Positives = 158/336 (47%), Gaps = 60/336 (17%)
Frame = +2
Query: 17 CVDKCRGFKIHGWRKTCLGCDCSVDRHDVT--------------DESPLPILEEMKLMDK 154
C +KC GF++H WRK C C C + HDV D ++ ++K
Sbjct: 25 CKEKCEGFELHFWRKICRNCKCGQEEHDVLLSNEEDRKVGKLFEDTKYTTLIAKLKSDGI 84
Query: 155 PYY--SLFMESLKMARKYGLS-------WLPIGLQASEVEQFTSIIGGN---IASRAGEK 298
P Y ++ + + +A K +S W P + Q+ ++ +A G +
Sbjct: 85 PMYKRNVMILTNPVAAKKNVSINTVTYEWAPPVQNQALARQYMQMLPKEKQPVAGSEGAQ 144
Query: 299 LRKQKLRRQIPVHDRCVEKFSHLETPTERQEAEKFLQFRNNQDLGVGHVY---------- 448
RK++L +Q+P HD+ K L +P E +E E+F++ ++ LGVG V
Sbjct: 145 YRKKQLAKQLPAHDQDPSKCHEL-SpreVKEMEQFVKKYKSEALGVGDVKLPCEMDAQGP 203
Query: 449 ---------RLDMAAL---------------PCTQCQSSVQAGQLAVRVEHAANSQMCWH 556
R AA+ C C+ S++ G A+ E A ++ WH
Sbjct: 204 KQMNIPGGDRSTPAAVGAMEDKSAEHKRTQYSCYCCKLSMKEGDPAIYAERAGYDKL-WH 262
Query: 557 PRCFKCTECDELLVDFIYCWYSNKPYCVRHYAQLIRPRCATCDELIFTEEYTRAMEQEHH 736
P CF C+ C ELLVD IY W + K YC RHY +PRCA CDELIF+ EYT+A Q H
Sbjct: 263 PACFVCSTCHELLVDMIYFWKNEKLYCGRHYCDSEKPRCAGCDELIFSNEYTQAENQNWH 322
Query: 737 PAHFACKSCDNSLTGHRYILKDDQPLCIGCYESQYA 844
HF C CD+ L G Y++ +D+P+C CY +A
Sbjct: 323 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA 358
Score = 43.1 bits (100), Expect = 0.001
Identities = 34/143 (23%), Positives = 51/143 (35%), Gaps = 5/143 (3%)
Frame = +2
Query: 404 LQFRNNQDLGVGHVYRLDMAALPCTQCQSSVQAGQLAVRVEHAANSQMCWHPRCFKCTEC 583
+ F N+ L G Y D C C +L E+ WH + F C +C
Sbjct: 279 IYFWKNEKLYCGRHY-CDSEKPRCAGCD------ELIFSNEYTQAENQNWHLKHFCCFDC 331
Query: 584 DELLVDFIYCWYSNKPYCVRHYAQLIRPRCATCDELIFTEEYTRAMEQEHHPAH-----F 748
D +L IY ++KP C Y + C C I E + + + H F
Sbjct: 332 DSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPE--VQRVTYNNFSWHASTECF 389
Query: 749 ACKSCDNSLTGHRYILKDDQPLC 817
C C L G +++ + C
Sbjct: 390 LCSCCSKCLIGQKFMPVEGMVFC 412
>sp|Q96MT3|PRIC1_HUMAN Prickle-like protein 1 (REST/NRSF-interacting LIM domain protein 1)
Length = 831
Score = 163 bits (412), Expect = 6e-40
Identities = 83/217 (38%), Positives = 122/217 (56%), Gaps = 5/217 (2%)
Frame = +2
Query: 209 SWLPIGLQASEVEQFTSIIGGN---IASRAGEKLRKQKLRRQIPVHDRCVEKFSHLETPT 379
+W+P GL+ +++ + + + + GEK R ++L Q+P HD V L +
Sbjct: 34 AWVPPGLRPEQIQLYFACLPEEKVPYVNSPGEKHRIKQLLYQLPPHDNEVRYCQSL-SEE 92
Query: 380 ERQEAEKFLQFRNNQDLGVGHVYRLDMAALP--CTQCQSSVQAGQLAVRVEHAANSQMCW 553
E++E + F R + LG G + L A + C QC + G++AV A +CW
Sbjct: 93 EKKELQVFSAQRKKEALGRGTIKLLSRAVMHAVCEQCGLKINGGEVAVFASRAGPG-VCW 151
Query: 554 HPRCFKCTECDELLVDFIYCWYSNKPYCVRHYAQLIRPRCATCDELIFTEEYTRAMEQEH 733
HP CF C C+ELLVD IY + K +C RH+A+L++PRC+ CDE+IF +E T A +
Sbjct: 152 HPSCFVCFTCNELLVDLIYFYQDGKIHCGRHHAELLKPRCSACDEIIFADECTEAEGRHW 211
Query: 734 HPAHFACKSCDNSLTGHRYILKDDQPLCIGCYESQYA 844
H HF C C+ L G RYI+KD +P C GC+ES YA
Sbjct: 212 HMKHFCCLECETVLGGQRYIMKDGRPFCCGCFESLYA 248
>sp|P47226|TES_MOUSE Testin (TES1/TES2)
Length = 423
Score = 152 bits (384), Expect = 1e-36
Identities = 100/329 (30%), Positives = 153/329 (46%), Gaps = 59/329 (17%)
Frame = +2
Query: 35 GFKIHGWRKTCLGCDCSVDRHDVT----------------DESPLPILEEMKLMDKPYY- 163
GF++H WRK C +C+V + +T D ++ ++K P Y
Sbjct: 36 GFELHFWRKICR--NCNVVKKSMTVLLSNEEDRKVGRLFEDTKYTTLIAKLKSDGIPMYK 93
Query: 164 -SLFMESLKMARKYGLS-------WLPIGLQASEVEQFTSIIGGN---IASRAGEKLRKQ 310
++ + + +A K +S W P + Q+ ++ +A G + RK+
Sbjct: 94 RNVMILTNPVAAKKNVSINTVTYEWAPPVQNQALARQYMQMLPKEKQPVAGSEGAQYRKK 153
Query: 311 KLRRQIPVHDRCVEKFSHLETPTERQEAEKFLQFRNNQDLGVGHV-YRLDMAA------- 466
+L +Q+P HD+ K L +P E +E E+F++ ++ LGVG V + +M A
Sbjct: 154 QLAKQLPAHDQDPSKCHEL-SPKEVKEMEQFVKKYKSEALGVGDVKFPSEMNAQGDKVHN 212
Query: 467 -----------------------LPCTQCQSSVQAGQLAVRVEHAANSQMCWHPRCFKCT 577
C C+ + G+ A+ E A ++ WHP CF C+
Sbjct: 213 CGNRHAPAAVASKDKSAESKKTQYSCYCCKHTTNEGEPAIYAERAGYDKL-WHPACFICS 271
Query: 578 ECDELLVDFIYCWYSNKPYCVRHYAQLIRPRCATCDELIFTEEYTRAMEQEHHPAHFACK 757
C ELLVD IY W + K YC RHY +PRCA CDELIF+ EYT+A Q H HF C
Sbjct: 272 TCGELLVDMIYFWKNGKLYCGRHYCDSEKPRCAGCDELIFSNEYTQAENQNWHLKHFCCF 331
Query: 758 SCDNSLTGHRYILKDDQPLCIGCYESQYA 844
CD+ L G Y++ D+P+C CY +A
Sbjct: 332 DCDHILAGKIYVMVTDKPVCKPCYVKNHA 360
Score = 41.6 bits (96), Expect = 0.003
Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 5/143 (3%)
Frame = +2
Query: 404 LQFRNNQDLGVGHVYRLDMAALPCTQCQSSVQAGQLAVRVEHAANSQMCWHPRCFKCTEC 583
+ F N L G Y D C C +L E+ WH + F C +C
Sbjct: 281 IYFWKNGKLYCGRHY-CDSEKPRCAGCD------ELIFSNEYTQAENQNWHLKHFCCFDC 333
Query: 584 DELLVDFIYCWYSNKPYCVRHYAQLIRPRCATCDELIFTEEYTRAMEQEHHPAH-----F 748
D +L IY ++KP C Y + C C I E + + + H F
Sbjct: 334 DHILAGKIYVMVTDKPVCKPCYVKNHAVVCQGCHNAIDPE--VQRVTYNNFSWHASTECF 391
Query: 749 ACKSCDNSLTGHRYILKDDQPLC 817
C C L G +++ + C
Sbjct: 392 LCSCCSKCLIGQKFMPVEGMVFC 414
>sp|Q8VEE1|LMC1_MOUSE LIM and cysteine-rich domains protein 1
Length = 365
Score = 147 bits (370), Expect = 5e-35
Identities = 97/348 (27%), Positives = 148/348 (42%), Gaps = 69/348 (19%)
Frame = +2
Query: 2 SARG----DCVDKCRGFKIHGWRKTCLGCDCSVDRH----DVTDESPLPILEEMKLMDKP 157
SARG C C GF+ H WRK C C CS + H D+ D+ + L LMD
Sbjct: 22 SARGVACLRCKGMCSGFEPHSWRKICKSCKCSQEEHCLSSDLDDDRKIGRL----LMDSK 77
Query: 158 YYSLFM-----ESLKMARKYGL-------------------SWLPIGLQASEVEQFTSII 265
Y +L + +++ ++ + W P G+ Q+ +I
Sbjct: 78 YATLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELI 137
Query: 266 GGN---IASRAGEKLRKQKLRRQIPVHDRCVEKFSHLETPTERQEAEKFLQFRNNQDLGV 436
+ G R+++L Q+P++D+ + L E + E+F++ ++ LGV
Sbjct: 138 PKERQPVTGTEGALYRRRQLMHQLPIYDQDPSRCRGL-VENELKAMEEFVKHYKSEALGV 196
Query: 437 GHVYRLDMAALP----------------------------------CTQCQSSVQAGQLA 514
G V LP C C+ +
Sbjct: 197 GEVALPGQGGLPKEENKTQEKPEGTETTAPTTNGSLGDPSKEVEYVCELCKGAAPVDSPV 256
Query: 515 VRVEHAANSQMCWHPRCFKCTECDELLVDFIYCWYSNKPYCVRHYAQLIRPRCATCDELI 694
V + A S+ WHP CF+C +C E LVD IY W P+C RHY + +RPRC+ CDE+I
Sbjct: 257 VYADRAGYSKQ-WHPTCFQCIKCSEPLVDLIYFWKDGAPWCGRHYCESVRPRCSGCDEII 315
Query: 695 FTEEYTRAMEQEHHPAHFACKSCDNSLTGHRYILKDDQPLCIGCYESQ 838
F+E+Y R + H HF C+ C+ L+G YI+ Q LC C +S+
Sbjct: 316 FSEDYQRVEDLAWHRKHFICEGCEQLLSGRAYIVTKGQLLCPTCSKSK 363
>sp|Q9NZU5|LMCD1_HUMAN LIM and cysteine-rich domains protein 1 (Dyxin)
Length = 365
Score = 141 bits (355), Expect = 3e-33
Identities = 94/344 (27%), Positives = 143/344 (41%), Gaps = 65/344 (18%)
Frame = +2
Query: 2 SARG----DCVDKCRGFKIHGWRKTCLGCDCSVDRHDVTDESPLPILEEMKLMDKPYYSL 169
SARG C C GF+ H WRK C C CS + H +T + LMD Y +L
Sbjct: 22 SARGVACLGCKGTCSGFEPHSWRKICKSCKCSQEDHCLTSDLEDDRKIGRLLMDSKYSTL 81
Query: 170 FM-----ESLKMARKYGL-------------------SWLPIGLQASEVEQFTSIIGGN- 274
+ +++ ++ + W P G+ Q+ +I
Sbjct: 82 TARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEK 141
Query: 275 --IASRAGEKLRKQKLRRQIPVHDRCVEKFSHLETPTERQEAEKFLQFRNNQDLGVGHVY 448
+ G R+++L Q+P++D+ + L E + E+F++ ++ LGVG V
Sbjct: 142 QPVTGTEGAFYRRRQLMHQLPIYDQDPSRCRGL-LENELKLMEEFVKQYKSEALGVGEVA 200
Query: 449 RLDMAALP----------------------------------CTQCQSSVQAGQLAVRVE 526
LP C C+ + V +
Sbjct: 201 LPGQGGLPKEEGKQQEKPEGAETTAATTNGSLSDPSKEVEYVCELCKGAAPPDSPVVYSD 260
Query: 527 HAANSQMCWHPRCFKCTECDELLVDFIYCWYSNKPYCVRHYAQLIRPRCATCDELIFTEE 706
A ++ WHP CF C +C E LVD IY W P+C RHY + +RPRC+ CDE+IF E+
Sbjct: 261 RAGYNKQ-WHPTCFVCAKCSEPLVDLIYFWKDGAPWCGRHYCESLRPRCSGCDEIIFAED 319
Query: 707 YTRAMEQEHHPAHFACKSCDNSLTGHRYILKDDQPLCIGCYESQ 838
Y R + H HF C+ C+ L+G YI+ Q LC C +S+
Sbjct: 320 YQRVEDLAWHRKHFVCEGCEQLLSGRAYIVTKGQLLCPTCSKSK 363
>sp|Q13643|FHL3_HUMAN Four and a half LIM domains protein 3 (FHL-3) (Skeletal muscle
LIM-protein 2) (SLIM 2)
Length = 280
Score = 73.2 bits (178), Expect = 9e-13
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Frame = +2
Query: 473 CTQCQSSVQAGQLAVRVEHAANSQMCWHPRCFKCTECDELLVDFIYCWYSNKPYCVRHYA 652
C +C ++ G L R + WHP+C CT C L + PYCV +
Sbjct: 162 CARCTKTLTQGGLTYR-------DLPWHPKCLVCTGCQTPLAGQQFTSRDEDPYCVACFG 214
Query: 653 QLIRPRCATCDELIF---TEEYTRAMEQEHHPAHFACKSCDNSLTGHRYILKDDQPLCIG 823
+L P+C++C I +Y ++ H F C C NSL G ++ DQ LC G
Sbjct: 215 ELFAPKCSSCKRPIVGLGGGKYVSFEDRHWHHNCFTCDRCSNSLVGQGFVPDGDQVLCQG 274
Query: 824 CYES 835
C ++
Sbjct: 275 CSQA 278
Score = 64.7 bits (156), Expect = 3e-10
Identities = 33/124 (26%), Positives = 53/124 (42%)
Frame = +2
Query: 473 CTQCQSSVQAGQLAVRVEHAANSQMCWHPRCFKCTECDELLVDFIYCWYSNKPYCVRHYA 652
C+ C +V G ++E+ + WH CF C C++ L + YCV Y
Sbjct: 101 CSACGETVMPGSR--KLEYGGQT---WHEHCFLCIGCEQPLGSRPFVPDKGAHYCVPCYE 155
Query: 653 QLIRPRCATCDELIFTEEYTRAMEQEHHPAHFACKSCDNSLTGHRYILKDDQPLCIGCYE 832
PRCA C + + T+ + HP C C L G ++ +D+ P C+ C+
Sbjct: 156 NNFAPRCARCTKTL-TQGGLTYRDLPWHPKCLVCTGCQTPLAGQQFTSRDEDPYCVACFG 214
Query: 833 SQYA 844
+A
Sbjct: 215 ELFA 218
Score = 55.1 bits (131), Expect = 2e-07
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +2
Query: 566 FKCTECDELLVDFIYCWYSNKPYCVRHYAQLIRPRCATCDELIFTEEYTRAMEQEH-HPA 742
F C +C+E L Y + PYCV Y CA C +LI + E H H
Sbjct: 5 FDCAKCNESLYGRKYIQTDSGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEG 64
Query: 743 HFACKSCDNSLTGHRYILKDDQPLCIGCYESQYAN 847
F C C SL + +D + LC CY S +++
Sbjct: 65 CFRCCRCQRSLADEPFTRQDSELLCNDCYCSAFSS 99
>sp|O60711|LPXN_HUMAN Leupaxin
Length = 386
Score = 71.2 bits (173), Expect = 3e-12
Identities = 46/132 (34%), Positives = 55/132 (41%)
Frame = +2
Query: 422 QDLGVGHVYRLDMAALPCTQCQSSVQAGQLAVRVEHAANSQMCWHPRCFKCTECDELLVD 601
QDLG+ V + C CQ + A +V HA WHP F CT C E +
Sbjct: 140 QDLGIATVPKGH-----CASCQKPI-----AGKVIHALGQS--WHPEHFVCTHCKEEIGS 187
Query: 602 FIYCWYSNKPYCVRHYAQLIRPRCATCDELIFTEEYTRAMEQEHHPAHFACKSCDNSLTG 781
+ S YC Y QL PRCA C I + T AM Q HP HF C C
Sbjct: 188 SPFFERSGLAYCPNDYHQLFSPRCAYCAAPILDKVLT-AMNQTWHPEHFFCSHCGEVFGA 246
Query: 782 HRYILKDDQPLC 817
+ KD +P C
Sbjct: 247 EGFHEKDKKPYC 258
Score = 58.9 bits (141), Expect = 2e-08
Identities = 27/89 (30%), Positives = 40/89 (44%)
Frame = +2
Query: 551 WHPRCFKCTECDELLVDFIYCWYSNKPYCVRHYAQLIRPRCATCDELIFTEEYTRAMEQE 730
WHP F C+ C E+ + KPYC + + + P+C C+ + E Y AM+
Sbjct: 230 WHPEHFFCSHCGEVFGAEGFHEKDKKPYCRKDFLAMFSPKCGGCNRPVL-ENYLSAMDTV 288
Query: 731 HHPAHFACKSCDNSLTGHRYILKDDQPLC 817
HP F C C S + + D +P C
Sbjct: 289 WHPECFVCGDCFTSFSTGSFFELDGRPFC 317
Score = 53.5 bits (127), Expect = 7e-07
Identities = 27/97 (27%), Positives = 40/97 (41%)
Frame = +2
Query: 551 WHPRCFKCTECDELLVDFIYCWYSNKPYCVRHYAQLIRPRCATCDELIFTEEYTRAMEQE 730
WHP CF C +C + +P+C HY C C + I T AM +
Sbjct: 289 WHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGTLCHGCGQPI-TGRCISAMGYK 347
Query: 731 HHPAHFACKSCDNSLTGHRYILKDDQPLCIGCYESQY 841
HP HF C C L+ + ++D+ C C+ +
Sbjct: 348 FHPEHFVCAFCLTQLSKGIFREQNDKTYCQPCFNKLF 384
Score = 30.4 bits (67), Expect = 6.5
Identities = 15/65 (23%), Positives = 26/65 (40%)
Frame = +2
Query: 650 AQLIRPRCATCDELIFTEEYTRAMEQEHHPAHFACKSCDNSLTGHRYILKDDQPLCIGCY 829
A + + CA+C + I + A+ Q HP HF C C + + + C Y
Sbjct: 145 ATVPKGHCASCQKPI-AGKVIHALGQSWHPEHFVCTHCKEEIGSSPFFERSGLAYCPNDY 203
Query: 830 ESQYA 844
++
Sbjct: 204 HQLFS 208
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,530,831
Number of Sequences: 369166
Number of extensions: 2006548
Number of successful extensions: 6634
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6414
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)