Planaria EST Database


DrC_02067

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02067
         (604 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y2L1|RRP44_HUMAN  Exosome complex exonuclease RRP44 (Ri...    59   7e-09
sp|Q9WZI1|RNR_THEMA  Ribonuclease R (RNase R) (VacB protein ...    59   1e-08
sp|P37202|DIS3_SCHPO  Mitotic control protein dis3                 57   5e-08
sp|Q09568|YR86_CAEEL  Hypothetical protein F48E8.6 in chromo...    57   5e-08
sp|Q9PK00|RNR_CHLMU  Ribonuclease R (RNase R) (VacB protein ...    55   1e-07
sp|O84402|RNR_CHLTR  Ribonuclease R (RNase R) (VacB protein ...    55   1e-07
sp|Q08162|RRP44_YEAST  Exosome complex exonuclease RRP44 (Ri...    55   2e-07
sp|Q9CH00|RNR1_LACLA  Ribonuclease R 1 (RNase R 1) (VacB pro...    53   5e-07
sp|O32231|RNR_BACSU  Ribonuclease R (RNase R) (VacB protein ...    53   7e-07
sp|Q98QL0|RNR_MYCPU  Ribonuclease R (RNase R) (VacB protein ...    50   6e-06
>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 (Ribosomal RNA processing protein
            44) (DIS3 protein homolog)
          Length = 958

 Score = 59.3 bits (142), Expect = 7e-09
 Identities = 45/152 (29%), Positives = 67/152 (44%)
 Frame = +1

Query: 148  EPIGFETKNLGKSNFLIEEFMLLANEASAKLLFNNFLSSESQIGAFLRRHPSPDKLKKSR 327
            +PI  +TK L ++N ++EEFMLLAN + AK +   F        A LR+HP+P       
Sbjct: 647  DPIDLQTKELRETNSMVEEFMLLANISVAKKIHEEFSEH-----ALLRKHPAPPPSNYEI 701

Query: 328  WFTACKRAGFKPKSLESSSVMEFINSLQSTCTTKATGLSYITYLNMELALYCCAEITYL* 507
               A +    + K+  + S+ E ++  +S          Y+  L   LA  C  +  Y  
Sbjct: 702  LVKAARSRNLEIKTDTAKSLAESLDQAESPT------FPYLNTLLRILATRCMMQAVY-- 753

Query: 508  VILIRITLLMILSFRFIILGLNVPLYTHFTSP 603
                       +   F   GL  P+YTHFTSP
Sbjct: 754  -------FCSGMDNDFHHYGLASPIYTHFTSP 778

 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 22/43 (51%), Positives = 32/43 (74%)
 Frame = +3

Query: 6   KLSNGNYLVGIHIADVSHFVLPNSALDSAALQRASSIYLKHKK 134
           +L NGN  VG+HIADVSHF+ P +ALD  + +R +++YL  K+
Sbjct: 494 ELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKR 536
>sp|Q9WZI1|RNR_THEMA Ribonuclease R (RNase R) (VacB protein homolog)
          Length = 710

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 26/40 (65%), Positives = 32/40 (80%)
 Frame = +3

Query: 3   EKLSNGNYLVGIHIADVSHFVLPNSALDSAALQRASSIYL 122
           EKL NGNYL+G+HIADVSH+V   SALD  A +R +S+YL
Sbjct: 272 EKLPNGNYLLGVHIADVSHYVKEGSALDQEAFKRGTSVYL 311
>sp|P37202|DIS3_SCHPO Mitotic control protein dis3
          Length = 970

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 24/42 (57%), Positives = 33/42 (78%)
 Frame = +3

Query: 9   LSNGNYLVGIHIADVSHFVLPNSALDSAALQRASSIYLKHKK 134
           L NGNY VG+HIADV+HFV PN+++DS A  R +++YL  K+
Sbjct: 524 LPNGNYEVGVHIADVTHFVKPNTSMDSEAASRGTTVYLVDKR 565

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 8/165 (4%)
 Frame = +1

Query: 133  NDSVPEPIGFETKNLGKSNFLIEEFMLLANEASAKLLFNNFLSSESQIGAFLRRHPSP-- 306
            ++   +P+  E K L ++N L+EEFMLLAN + A+ +++ F  +     A LRRH +P  
Sbjct: 671  DNETSDPMDVEIKQLLETNSLVEEFMLLANISVAQKIYDAFPQT-----AVLRRHAAPPL 725

Query: 307  ---DKLKKSRWFTACKRAGFK---PKSLESSSVMEFINSLQSTCTTKATGLSYITYLNME 468
               D L+       CK    K    KSL + S+ E ++  +    T    L  +T   M 
Sbjct: 726  TNFDSLQDI--LRVCKGMHLKCDTSKSL-AKSLDECVDPKEPYFNTL---LRILTTRCML 779

Query: 469  LALYCCAEITYL*VILIRITLLMILSFRFIILGLNVPLYTHFTSP 603
             A Y C+                     F   GL  P+YTHFTSP
Sbjct: 780  SAEYFCSG--------------TFAPPDFRHYGLASPIYTHFTSP 810
>sp|Q09568|YR86_CAEEL Hypothetical protein F48E8.6 in chromosome III
          Length = 817

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 54/161 (33%), Positives = 69/161 (42%), Gaps = 5/161 (3%)
 Frame = +1

Query: 136 DSVPEPIGFETKNLGKSNFLIEEFMLLANEASAKLLFNNFLSSESQIGAFLRRHPSPDKL 315
           D   +P G     +  SN L+EEFMLLAN   AK +  NF        A LR HP P + 
Sbjct: 498 DEDKKPQGVSIYEIKDSNKLVEEFMLLANMEVAKKIAENFPEH-----ALLRNHPPPKEK 552

Query: 316 KKSRWFTACKRAGF----KPKSLESSSVMEFI-NSLQSTCTTKATGLSYITYLNMELALY 480
                   C R GF    +   L S+S+ ++   S    C  +   +S +T   M+ A Y
Sbjct: 553 MIKDVAEQCARIGFPLDGRTSGLLSTSLRKYQGKSRLDMCIRQV--ISSLTIKPMQQAKY 610

Query: 481 CCAEITYL*VILIRITLLMILSFRFIILGLNVPLYTHFTSP 603
            C             T  M LSF +    LNV  YTHFTSP
Sbjct: 611 FC-------------TFEMPLSF-YHHFALNVDHYTHFTSP 637

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 30  VGIHIADVSHFVLPNSALDSAALQRASSIYL 122
           +G+HIADV+ F+   + LD  A +R +S YL
Sbjct: 343 IGVHIADVTFFLKEGTELDKWASERGNSTYL 373
>sp|Q9PK00|RNR_CHLMU Ribonuclease R (RNase R) (VacB protein homolog)
          Length = 692

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +3

Query: 18  GNYLVGIHIADVSHFVLPNSALDSAALQRASSIYLKHK 131
           GNY++G+HIADVSH+V PNSALD  A +R +SIY   K
Sbjct: 235 GNYILGVHIADVSHYVTPNSALDQEAAKRCNSIYFPGK 272
>sp|O84402|RNR_CHLTR Ribonuclease R (RNase R) (VacB protein homolog)
          Length = 694

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +3

Query: 18  GNYLVGIHIADVSHFVLPNSALDSAALQRASSIYLKHK 131
           GNY++G+HIADVSH+V PNSALD  A +R +SIY   K
Sbjct: 235 GNYILGVHIADVSHYVTPNSALDREAAKRCNSIYFPGK 272
>sp|Q08162|RRP44_YEAST Exosome complex exonuclease RRP44 (Ribosomal RNA processing protein
           44) (Protein DIS3)
          Length = 1001

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 24/44 (54%), Positives = 33/44 (75%)
 Frame = +3

Query: 3   EKLSNGNYLVGIHIADVSHFVLPNSALDSAALQRASSIYLKHKK 134
           +KL NGN+ VG+HIADV+HFV P +ALD+    R +S+YL  K+
Sbjct: 557 KKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKR 600

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 47/169 (27%), Positives = 65/169 (38%), Gaps = 17/169 (10%)
 Frame = +1

Query: 148  EPIGFETKNLGKSNFLIEEFMLLANEASAKLLFNNFLSSESQIGAFLRRHPSPDKLKKSR 327
            +P   E K L  +N L+EEFMLLAN + A+ +++ F  +     A LRRH +P       
Sbjct: 711  DPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQT-----AMLRRHAAP------- 758

Query: 328  WFTACKRAGFKPKSLESSSVMEFINSLQSTCTTKATGLSYITYLNMELALYCCAEITYL* 507
                             S+  E +N + +T    +  L     L   L      E  Y  
Sbjct: 759  ----------------PSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYF- 801

Query: 508  VILIRITLLMILSFR-----------------FIILGLNVPLYTHFTSP 603
                  TL+ I+S R                 F   GL V +YTHFTSP
Sbjct: 802  -----NTLVRIMSTRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSP 845
>sp|Q9CH00|RNR1_LACLA Ribonuclease R 1 (RNase R 1) (VacB protein homolog 1)
          Length = 817

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 22/40 (55%), Positives = 31/40 (77%)
 Frame = +3

Query: 3   EKLSNGNYLVGIHIADVSHFVLPNSALDSAALQRASSIYL 122
           ++L NGNY +G+HIADVSH+V  NS LD  A +R +S+Y+
Sbjct: 285 KRLENGNYELGVHIADVSHYVTENSPLDKEAYERGTSVYV 324
>sp|O32231|RNR_BACSU Ribonuclease R (RNase R) (VacB protein homolog)
          Length = 779

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 22/39 (56%), Positives = 31/39 (79%)
 Frame = +3

Query: 6   KLSNGNYLVGIHIADVSHFVLPNSALDSAALQRASSIYL 122
           KL +G+Y +G+HIADVSH+V  NS +D  AL+R +S+YL
Sbjct: 275 KLDDGSYKLGVHIADVSHYVTENSPIDKEALERGTSVYL 313
>sp|Q98QL0|RNR_MYCPU Ribonuclease R (RNase R) (VacB protein homolog)
          Length = 725

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 21/36 (58%), Positives = 30/36 (83%)
 Frame = +3

Query: 21  NYLVGIHIADVSHFVLPNSALDSAALQRASSIYLKH 128
           ++L+ +HIADV+H+V  NSA+D  AL+RA+SIYL H
Sbjct: 267 HFLLSVHIADVAHYVKENSAIDKEALRRATSIYLPH 302
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,211,752
Number of Sequences: 369166
Number of extensions: 1244868
Number of successful extensions: 3695
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3687
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)