Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02060
(509 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03177|YMZ2_YEAST Hypothetical 94.3 kDa Trp-Asp repeats ... 30 4.3
sp|P35371|BRS3_CAVPO Bombesin receptor subtype-3 (BRS-3) 29 7.3
sp|P34217|YBF1_YEAST Hypothetical 73.8 kDa protein in SAS3-... 29 7.3
sp|P39572|GIANT_DROME Giant protein 29 7.3
sp|P63614|AROC_STAAN Chorismate synthase (5-enolpyruvylshik... 29 7.3
sp|Q5HFV7|AROC_STAAC Chorismate synthase (5-enolpyruvylshik... 29 7.3
sp|Q00329|RFBJ_SALMU CDP-abequose synthase 28 9.6
>sp|Q03177|YMZ2_YEAST Hypothetical 94.3 kDa Trp-Asp repeats containing protein in
SNZ1-YPK2 intergenic region
Length = 834
Score = 29.6 bits (65), Expect = 4.3
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Frame = +2
Query: 176 NNSETETKHDGFESNNNNSDQFFAALEQDIECNIQLNSPVGELRYFHYECIIDAKLFQGW 355
NN+ + K+ SNN N+ F L++ ++ LNS + ++ + ID + F+ +
Sbjct: 72 NNTNDKLKY----SNNGNATDSFMRLKEHLQRGNTLNSNLRVNEFYPFNS-IDTEQFENY 126
Query: 356 ---PNSLKFLRCYQFCKMNHSLTYQSAEMEIFAEVVCSMATSS--TSDEILSGK 502
P +K L+ + K L M E V S + SS TS I S K
Sbjct: 127 LREPKYIKMLKRRKNLKQFRRLFLAQELMAYEGETVTSTSKSSEPTSKAIWSTK 180
>sp|P35371|BRS3_CAVPO Bombesin receptor subtype-3 (BRS-3)
Length = 399
Score = 28.9 bits (63), Expect = 7.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 123 YESSSRMHFVVKHFQSLLAFK*SGIN 46
YE SS +HF+V F +LAF S +N
Sbjct: 301 YEDSSAIHFIVTIFSRVLAFSNSCVN 326
>sp|P34217|YBF1_YEAST Hypothetical 73.8 kDa protein in SAS3-SEC17 intergenic region
Length = 668
Score = 28.9 bits (63), Expect = 7.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 194 TKHDGFESNNNNSDQFFAALEQDIECNIQLNSPV 295
+K G +NN +++Q F+ L I N +NSP+
Sbjct: 199 SKMSGSGNNNTSNNQLFSTLMNGINANSMMNSPM 232
>sp|P39572|GIANT_DROME Giant protein
Length = 448
Score = 28.9 bits (63), Expect = 7.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 164 KENANNSETETKHDGFESNNNNSDQFFAALEQDIECNIQ 280
K NS + + ++G SNNN+ + AA E+ +C+ Q
Sbjct: 312 KMRRTNSRSGSVNEGSSSNNNSESEDRAAAEESSDCDSQ 350
>sp|P63614|AROC_STAAN Chorismate synthase (5-enolpyruvylshikimate-3-phosphate
phospholyase)
sp|P63613|AROC_STAAM Chorismate synthase (5-enolpyruvylshikimate-3-phosphate
phospholyase)
Length = 388
Score = 28.9 bits (63), Expect = 7.3
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 176 NNSETETKHDGFESNNNNSDQFFAALEQDIECNIQLNSPVGELRYFHYECIIDAKLFQG 352
++S + D + N D ++ +E N PVG Y HY+ +D K+ QG
Sbjct: 193 DDSIAQAMRDKIDEAKNEGDSIGGVVQVVVE-----NMPVGVGSYVHYDRKLDGKIAQG 246
>sp|Q5HFV7|AROC_STAAC Chorismate synthase (5-enolpyruvylshikimate-3-phosphate
phospholyase)
Length = 388
Score = 28.9 bits (63), Expect = 7.3
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 176 NNSETETKHDGFESNNNNSDQFFAALEQDIECNIQLNSPVGELRYFHYECIIDAKLFQG 352
++S + D + N D ++ +E N PVG Y HY+ +D K+ QG
Sbjct: 193 DDSIAQAMRDKIDEAKNEGDSIGGVVQVVVE-----NMPVGVGSYVHYDRKLDGKIAQG 246
>sp|Q00329|RFBJ_SALMU CDP-abequose synthase
Length = 293
Score = 28.5 bits (62), Expect = 9.6
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 168 SFYQKYDKIYGY*LKYESSSRMHFV 94
SF+ KY+K YGY Y +S R HFV
Sbjct: 115 SFFGKYEKHYGYMRSYMASKR-HFV 138
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,081,575
Number of Sequences: 369166
Number of extensions: 1172674
Number of successful extensions: 3220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3140
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3255600150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)