Planaria EST Database


DrC_02060

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02060
         (509 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03177|YMZ2_YEAST  Hypothetical 94.3 kDa Trp-Asp repeats ...    30   4.3  
sp|P35371|BRS3_CAVPO  Bombesin receptor subtype-3 (BRS-3)          29   7.3  
sp|P34217|YBF1_YEAST  Hypothetical 73.8 kDa protein in SAS3-...    29   7.3  
sp|P39572|GIANT_DROME  Giant protein                               29   7.3  
sp|P63614|AROC_STAAN  Chorismate synthase (5-enolpyruvylshik...    29   7.3  
sp|Q5HFV7|AROC_STAAC  Chorismate synthase (5-enolpyruvylshik...    29   7.3  
sp|Q00329|RFBJ_SALMU  CDP-abequose synthase                        28   9.6  
>sp|Q03177|YMZ2_YEAST Hypothetical 94.3 kDa Trp-Asp repeats containing protein in
           SNZ1-YPK2 intergenic region
          Length = 834

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
 Frame = +2

Query: 176 NNSETETKHDGFESNNNNSDQFFAALEQDIECNIQLNSPVGELRYFHYECIIDAKLFQGW 355
           NN+  + K+    SNN N+   F  L++ ++    LNS +    ++ +   ID + F+ +
Sbjct: 72  NNTNDKLKY----SNNGNATDSFMRLKEHLQRGNTLNSNLRVNEFYPFNS-IDTEQFENY 126

Query: 356 ---PNSLKFLRCYQFCKMNHSLTYQSAEMEIFAEVVCSMATSS--TSDEILSGK 502
              P  +K L+  +  K    L      M    E V S + SS  TS  I S K
Sbjct: 127 LREPKYIKMLKRRKNLKQFRRLFLAQELMAYEGETVTSTSKSSEPTSKAIWSTK 180
>sp|P35371|BRS3_CAVPO Bombesin receptor subtype-3 (BRS-3)
          Length = 399

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 123 YESSSRMHFVVKHFQSLLAFK*SGIN 46
           YE SS +HF+V  F  +LAF  S +N
Sbjct: 301 YEDSSAIHFIVTIFSRVLAFSNSCVN 326
>sp|P34217|YBF1_YEAST Hypothetical 73.8 kDa protein in SAS3-SEC17 intergenic region
          Length = 668

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 194 TKHDGFESNNNNSDQFFAALEQDIECNIQLNSPV 295
           +K  G  +NN +++Q F+ L   I  N  +NSP+
Sbjct: 199 SKMSGSGNNNTSNNQLFSTLMNGINANSMMNSPM 232
>sp|P39572|GIANT_DROME Giant protein
          Length = 448

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 164 KENANNSETETKHDGFESNNNNSDQFFAALEQDIECNIQ 280
           K    NS + + ++G  SNNN+  +  AA E+  +C+ Q
Sbjct: 312 KMRRTNSRSGSVNEGSSSNNNSESEDRAAAEESSDCDSQ 350
>sp|P63614|AROC_STAAN Chorismate synthase (5-enolpyruvylshikimate-3-phosphate
           phospholyase)
 sp|P63613|AROC_STAAM Chorismate synthase (5-enolpyruvylshikimate-3-phosphate
           phospholyase)
          Length = 388

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +2

Query: 176 NNSETETKHDGFESNNNNSDQFFAALEQDIECNIQLNSPVGELRYFHYECIIDAKLFQG 352
           ++S  +   D  +   N  D     ++  +E     N PVG   Y HY+  +D K+ QG
Sbjct: 193 DDSIAQAMRDKIDEAKNEGDSIGGVVQVVVE-----NMPVGVGSYVHYDRKLDGKIAQG 246
>sp|Q5HFV7|AROC_STAAC Chorismate synthase (5-enolpyruvylshikimate-3-phosphate
           phospholyase)
          Length = 388

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +2

Query: 176 NNSETETKHDGFESNNNNSDQFFAALEQDIECNIQLNSPVGELRYFHYECIIDAKLFQG 352
           ++S  +   D  +   N  D     ++  +E     N PVG   Y HY+  +D K+ QG
Sbjct: 193 DDSIAQAMRDKIDEAKNEGDSIGGVVQVVVE-----NMPVGVGSYVHYDRKLDGKIAQG 246
>sp|Q00329|RFBJ_SALMU CDP-abequose synthase
          Length = 293

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 168 SFYQKYDKIYGY*LKYESSSRMHFV 94
           SF+ KY+K YGY   Y +S R HFV
Sbjct: 115 SFFGKYEKHYGYMRSYMASKR-HFV 138
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,081,575
Number of Sequences: 369166
Number of extensions: 1172674
Number of successful extensions: 3220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3140
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3255600150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)