Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02056
(669 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P58302|RAD50_THEVO DNA double-strand break repair rad50 ... 31 2.6
sp|Q60287|YZ28_METJA Hypothetical protein MJECL28 29 9.8
>sp|P58302|RAD50_THEVO DNA double-strand break repair rad50 ATPase
Length = 895
Score = 31.2 bits (69), Expect = 2.6
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +3
Query: 3 KGEVKSKLIEILVSSDGPTLTISDIQ---KIVRPTFKALFTDSNSSENKND-IREKLDRF 170
K E++SK+ EI D I +++ +++ P KAL + N ENK D + E+L R
Sbjct: 189 KNELQSKINEI----DNNNKQIEELESKLRLIEPEIKALEEEINIKENKKDHLNEELHRL 244
Query: 171 N 173
N
Sbjct: 245 N 245
>sp|Q60287|YZ28_METJA Hypothetical protein MJECL28
Length = 1272
Score = 29.3 bits (64), Expect = 9.8
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Frame = +3
Query: 21 KLIEILVSSDGPTLTISDIQKIVRPTFKALFTD-SNSSENK-NDIREKLDRFNCLPNSCG 194
+LIE++ G TLT+ ++++++R F + EN +I+E F L
Sbjct: 1143 ELIEVIKEECGFTLTLDEVRRLIRAIFNCVIRGVKKLGENAVVEIKELNKEFKTLYEIIK 1202
Query: 195 QLID------CLKVINRFDLINKIEKNWGRMV 272
Q I+ C KVI + KIE+N G ++
Sbjct: 1203 QNINSNSVEKCEKVIEK-----KIEENGGEIL 1229
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,940,450
Number of Sequences: 369166
Number of extensions: 834501
Number of successful extensions: 2195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2195
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5657676120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)