Planaria EST Database


DrC_02056

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02056
         (669 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P58302|RAD50_THEVO  DNA double-strand break repair rad50 ...    31   2.6  
sp|Q60287|YZ28_METJA  Hypothetical protein MJECL28                 29   9.8  
>sp|P58302|RAD50_THEVO DNA double-strand break repair rad50 ATPase
          Length = 895

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = +3

Query: 3   KGEVKSKLIEILVSSDGPTLTISDIQ---KIVRPTFKALFTDSNSSENKND-IREKLDRF 170
           K E++SK+ EI    D     I +++   +++ P  KAL  + N  ENK D + E+L R 
Sbjct: 189 KNELQSKINEI----DNNNKQIEELESKLRLIEPEIKALEEEINIKENKKDHLNEELHRL 244

Query: 171 N 173
           N
Sbjct: 245 N 245
>sp|Q60287|YZ28_METJA Hypothetical protein MJECL28
          Length = 1272

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
 Frame = +3

Query: 21   KLIEILVSSDGPTLTISDIQKIVRPTFKALFTD-SNSSENK-NDIREKLDRFNCLPNSCG 194
            +LIE++    G TLT+ ++++++R  F  +        EN   +I+E    F  L     
Sbjct: 1143 ELIEVIKEECGFTLTLDEVRRLIRAIFNCVIRGVKKLGENAVVEIKELNKEFKTLYEIIK 1202

Query: 195  QLID------CLKVINRFDLINKIEKNWGRMV 272
            Q I+      C KVI +     KIE+N G ++
Sbjct: 1203 QNINSNSVEKCEKVIEK-----KIEENGGEIL 1229
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,940,450
Number of Sequences: 369166
Number of extensions: 834501
Number of successful extensions: 2195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2195
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5657676120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)