Planaria EST Database


DrC_02052

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02052
         (361 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O20163|TILS_CHLVU  tRNA(Ile)-lysidine synthase (tRNA(Ile)...    30   1.3  
sp|Q8YZP7|TRPB1_ANASP  Tryptophan synthase beta chain 1            29   3.8  
sp|O42851|YFHE_SCHPO  Hypothetical protein C23A1.14c in chro...    28   4.9  
sp|O07299|ALGD_PSESH  GDP-mannose 6-dehydrogenase (GMD)            28   4.9  
sp|O61643|INHB_DROME  Inhibin beta chain precursor (Activin ...    28   4.9  
sp|P59793|ALGD_PSESY  GDP-mannose 6-dehydrogenase (GMD)            28   4.9  
sp|Q887P8|ALGD_PSESM  GDP-mannose 6-dehydrogenase (GMD)            28   4.9  
sp|P52934|SP0A_BACST  Stage 0 sporulation protein A                28   4.9  
sp|Q15303|ERBB4_HUMAN  Receptor tyrosine-protein kinase erbB...    28   6.4  
sp|Q6YQT8|GPMI_ONYPE  2,3-bisphosphoglycerate-independent ph...    28   6.4  
>sp|O20163|TILS_CHLVU tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 504

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 134 CKHFHTCFEYLCSNFPYQISFCFDIRYS 51
           C+HF     + C  F +Q++F FDI Y+
Sbjct: 110 CQHFWQTQNFFCVEFLFQLTFFFDIPYT 137
>sp|Q8YZP7|TRPB1_ANASP Tryptophan synthase beta chain 1
          Length = 409

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 324 KYRTESYYYRSTKSLISSYKLHPVKLYVLSNATEFSRRP 208
           KYR ++ Y    ++L+  Y   P  LY     TE+  RP
Sbjct: 45  KYRDDASYQTELQNLLRDYVGRPSPLYFAERLTEYYARP 83
>sp|O42851|YFHE_SCHPO Hypothetical protein C23A1.14c in chromosome I
          Length = 398

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = -2

Query: 315 TESYYYRSTKSLISSYKLHPVKLYVLSNATEFSRRPPLILLSEYAIPSGFETSSFFSGLF 136
           T S+     KS +S+  LH    Y L N       PP+ + + Y  P   +T   F+ L 
Sbjct: 4   TPSFDLSDIKSTLSTNVLHADDAYALENDVA----PPIHISTTYTYPGTPDTLQPFTKLA 59

Query: 135 M*TFPY 118
              FPY
Sbjct: 60  EEDFPY 65
>sp|O07299|ALGD_PSESH GDP-mannose 6-dehydrogenase (GMD)
          Length = 438

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -2

Query: 318 RTESYYYRSTKSLISSYKLHPVKLYVLS--NATEFSRRPPLILLSEYAIPSGFETSSFFS 145
           R+ +   ++   +++SY    V L  LS    T+  R  PL+ L+E  I  GF+ S F S
Sbjct: 295 RSNTSQVQNAFDMVASYDTRKVALLGLSFKAGTDDLRESPLVELAEMLIGKGFDLSIFDS 354

Query: 144 GL 139
            +
Sbjct: 355 NV 356
>sp|O61643|INHB_DROME Inhibin beta chain precursor (Activin beta chain)
          Length = 946

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 62  YQNRKKFDMGNLNISIQNMYGNVYMNSPLKKLDVSNPDGMAYSESK 199
           ++ R  FD    NIS  N+YG V  N  L+++D  N     ++E++
Sbjct: 460 HKYRSPFDF-TFNISKNNVYGKVLRNRSLERIDKKNSFLNGWTENR 504
>sp|P59793|ALGD_PSESY GDP-mannose 6-dehydrogenase (GMD)
          Length = 438

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -2

Query: 318 RTESYYYRSTKSLISSYKLHPVKLYVLS--NATEFSRRPPLILLSEYAIPSGFETSSFFS 145
           R+ +   ++   +++SY    V L  LS    T+  R  PL+ L+E  I  GF+ S F S
Sbjct: 295 RSNTSQVQNAFDMVASYDARKVALLGLSFKAGTDDLRESPLVELAEMLIGKGFDLSIFDS 354

Query: 144 GL 139
            +
Sbjct: 355 NV 356
>sp|Q887P8|ALGD_PSESM GDP-mannose 6-dehydrogenase (GMD)
          Length = 438

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -2

Query: 318 RTESYYYRSTKSLISSYKLHPVKLYVLS--NATEFSRRPPLILLSEYAIPSGFETSSFFS 145
           R+ +   ++   +++SY    V L  LS    T+  R  PL+ L+E  I  GF+ S F S
Sbjct: 295 RSNTSQVQNAFDMVASYDTRKVALLGLSFKAGTDDLRESPLVELAEMLIGKGFDLSIFDS 354

Query: 144 GL 139
            +
Sbjct: 355 NV 356
>sp|P52934|SP0A_BACST Stage 0 sporulation protein A
          Length = 259

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 23  ESITKPFVETNTVYQNRKKFDMGNLNISIQNMYG 124
           E +TK  VE    Y   K FDM NL   I+ +YG
Sbjct: 89  EDVTKKAVELGASYFILKPFDMENLAHHIRQVYG 122
>sp|Q15303|ERBB4_HUMAN Receptor tyrosine-protein kinase erbB-4 precursor (p180erbB4)
            (Tyrosine kinase-type cell surface receptor HER4)
          Length = 1308

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -3

Query: 263  YIQSNCMSYPMRLSLVDALH*FYFLNMPSHQDLKHQAFLADYSCKHFH 120
            Y+++N +S P +         ++  ++P    L+H  +L +YS K+F+
Sbjct: 1221 YLKNNILSMPEKAKKAFDNPDYWNHSLPPRSTLQHPDYLQEYSTKYFY 1268
>sp|Q6YQT8|GPMI_ONYPE 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
           (Phosphoglyceromutase) (BPG-independent PGAM) (iPGM)
          Length = 512

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 17/74 (22%), Positives = 35/74 (47%)
 Frame = +2

Query: 20  TESITKPFVETNTVYQNRKKFDMGNLNISIQNMYGNVYMNSPLKKLDVSNPDGMAYSESK 199
           T+ +   F+ T T Y  + K  +    I+++N+YG V  N  + +L ++  +   +    
Sbjct: 284 TKLLNNLFLVTMTKYSAQVKSVVAFEKITLKNIYGEVIANLGMHQLRIAETEKYPHVTFF 343

Query: 200 INGGRLLNSVALDK 241
            +GG+ L     D+
Sbjct: 344 FDGGKELQLKNADR 357
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,864,438
Number of Sequences: 369166
Number of extensions: 840885
Number of successful extensions: 2157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2157
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)