Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02052
(361 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O20163|TILS_CHLVU tRNA(Ile)-lysidine synthase (tRNA(Ile)... 30 1.3
sp|Q8YZP7|TRPB1_ANASP Tryptophan synthase beta chain 1 29 3.8
sp|O42851|YFHE_SCHPO Hypothetical protein C23A1.14c in chro... 28 4.9
sp|O07299|ALGD_PSESH GDP-mannose 6-dehydrogenase (GMD) 28 4.9
sp|O61643|INHB_DROME Inhibin beta chain precursor (Activin ... 28 4.9
sp|P59793|ALGD_PSESY GDP-mannose 6-dehydrogenase (GMD) 28 4.9
sp|Q887P8|ALGD_PSESM GDP-mannose 6-dehydrogenase (GMD) 28 4.9
sp|P52934|SP0A_BACST Stage 0 sporulation protein A 28 4.9
sp|Q15303|ERBB4_HUMAN Receptor tyrosine-protein kinase erbB... 28 6.4
sp|Q6YQT8|GPMI_ONYPE 2,3-bisphosphoglycerate-independent ph... 28 6.4
>sp|O20163|TILS_CHLVU tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase)
Length = 504
Score = 30.4 bits (67), Expect = 1.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 134 CKHFHTCFEYLCSNFPYQISFCFDIRYS 51
C+HF + C F +Q++F FDI Y+
Sbjct: 110 CQHFWQTQNFFCVEFLFQLTFFFDIPYT 137
>sp|Q8YZP7|TRPB1_ANASP Tryptophan synthase beta chain 1
Length = 409
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 324 KYRTESYYYRSTKSLISSYKLHPVKLYVLSNATEFSRRP 208
KYR ++ Y ++L+ Y P LY TE+ RP
Sbjct: 45 KYRDDASYQTELQNLLRDYVGRPSPLYFAERLTEYYARP 83
>sp|O42851|YFHE_SCHPO Hypothetical protein C23A1.14c in chromosome I
Length = 398
Score = 28.5 bits (62), Expect = 4.9
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = -2
Query: 315 TESYYYRSTKSLISSYKLHPVKLYVLSNATEFSRRPPLILLSEYAIPSGFETSSFFSGLF 136
T S+ KS +S+ LH Y L N PP+ + + Y P +T F+ L
Sbjct: 4 TPSFDLSDIKSTLSTNVLHADDAYALENDVA----PPIHISTTYTYPGTPDTLQPFTKLA 59
Query: 135 M*TFPY 118
FPY
Sbjct: 60 EEDFPY 65
>sp|O07299|ALGD_PSESH GDP-mannose 6-dehydrogenase (GMD)
Length = 438
Score = 28.5 bits (62), Expect = 4.9
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -2
Query: 318 RTESYYYRSTKSLISSYKLHPVKLYVLS--NATEFSRRPPLILLSEYAIPSGFETSSFFS 145
R+ + ++ +++SY V L LS T+ R PL+ L+E I GF+ S F S
Sbjct: 295 RSNTSQVQNAFDMVASYDTRKVALLGLSFKAGTDDLRESPLVELAEMLIGKGFDLSIFDS 354
Query: 144 GL 139
+
Sbjct: 355 NV 356
>sp|O61643|INHB_DROME Inhibin beta chain precursor (Activin beta chain)
Length = 946
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 62 YQNRKKFDMGNLNISIQNMYGNVYMNSPLKKLDVSNPDGMAYSESK 199
++ R FD NIS N+YG V N L+++D N ++E++
Sbjct: 460 HKYRSPFDF-TFNISKNNVYGKVLRNRSLERIDKKNSFLNGWTENR 504
>sp|P59793|ALGD_PSESY GDP-mannose 6-dehydrogenase (GMD)
Length = 438
Score = 28.5 bits (62), Expect = 4.9
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -2
Query: 318 RTESYYYRSTKSLISSYKLHPVKLYVLS--NATEFSRRPPLILLSEYAIPSGFETSSFFS 145
R+ + ++ +++SY V L LS T+ R PL+ L+E I GF+ S F S
Sbjct: 295 RSNTSQVQNAFDMVASYDARKVALLGLSFKAGTDDLRESPLVELAEMLIGKGFDLSIFDS 354
Query: 144 GL 139
+
Sbjct: 355 NV 356
>sp|Q887P8|ALGD_PSESM GDP-mannose 6-dehydrogenase (GMD)
Length = 438
Score = 28.5 bits (62), Expect = 4.9
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -2
Query: 318 RTESYYYRSTKSLISSYKLHPVKLYVLS--NATEFSRRPPLILLSEYAIPSGFETSSFFS 145
R+ + ++ +++SY V L LS T+ R PL+ L+E I GF+ S F S
Sbjct: 295 RSNTSQVQNAFDMVASYDTRKVALLGLSFKAGTDDLRESPLVELAEMLIGKGFDLSIFDS 354
Query: 144 GL 139
+
Sbjct: 355 NV 356
>sp|P52934|SP0A_BACST Stage 0 sporulation protein A
Length = 259
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 23 ESITKPFVETNTVYQNRKKFDMGNLNISIQNMYG 124
E +TK VE Y K FDM NL I+ +YG
Sbjct: 89 EDVTKKAVELGASYFILKPFDMENLAHHIRQVYG 122
>sp|Q15303|ERBB4_HUMAN Receptor tyrosine-protein kinase erbB-4 precursor (p180erbB4)
(Tyrosine kinase-type cell surface receptor HER4)
Length = 1308
Score = 28.1 bits (61), Expect = 6.4
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = -3
Query: 263 YIQSNCMSYPMRLSLVDALH*FYFLNMPSHQDLKHQAFLADYSCKHFH 120
Y+++N +S P + ++ ++P L+H +L +YS K+F+
Sbjct: 1221 YLKNNILSMPEKAKKAFDNPDYWNHSLPPRSTLQHPDYLQEYSTKYFY 1268
>sp|Q6YQT8|GPMI_ONYPE 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
(Phosphoglyceromutase) (BPG-independent PGAM) (iPGM)
Length = 512
Score = 28.1 bits (61), Expect = 6.4
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +2
Query: 20 TESITKPFVETNTVYQNRKKFDMGNLNISIQNMYGNVYMNSPLKKLDVSNPDGMAYSESK 199
T+ + F+ T T Y + K + I+++N+YG V N + +L ++ + +
Sbjct: 284 TKLLNNLFLVTMTKYSAQVKSVVAFEKITLKNIYGEVIANLGMHQLRIAETEKYPHVTFF 343
Query: 200 INGGRLLNSVALDK 241
+GG+ L D+
Sbjct: 344 FDGGKELQLKNADR 357
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,864,438
Number of Sequences: 369166
Number of extensions: 840885
Number of successful extensions: 2157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2157
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)