Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02050
(402 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 164 6e-41
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 164 6e-41
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 164 6e-41
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 164 6e-41
sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin) 163 1e-40
sp|P02554|TBB_PIG Tubulin beta chain 163 1e-40
sp|O17449|TBB1_MANSE Tubulin beta-1 chain (Beta-1 tubulin) 163 1e-40
sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin) 162 2e-40
sp|P13602|TBB2_XENLA Tubulin beta-2 chain (Beta-2 tubulin) 162 3e-40
sp|P41937|TBB4_CAEEL Tubulin beta-4 chain (Beta-4 tubulin) 162 3e-40
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 164 bits (415), Expect = 6e-41
Identities = 79/101 (78%), Positives = 82/101 (81%)
Frame = +2
Query: 2 DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133
Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
Q KIREEYPDRIMNTFSVVPSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPK 174
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +1
Query: 307 SDTVVEPY-MHLSRHHLVENT 366
SDTVVEPY LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 164 bits (415), Expect = 6e-41
Identities = 79/101 (78%), Positives = 82/101 (81%)
Frame = +2
Query: 2 DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133
Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
Q KIREEYPDRIMNTFSVVPSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPK 174
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +1
Query: 307 SDTVVEPY-MHLSRHHLVENT 366
SDTVVEPY LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 164 bits (415), Expect = 6e-41
Identities = 79/101 (78%), Positives = 82/101 (81%)
Frame = +2
Query: 2 DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133
Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
Q KIREEYPDRIMNTFSVVPSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPK 174
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +1
Query: 307 SDTVVEPY-MHLSRHHLVENT 366
SDTVVEPY LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 164 bits (415), Expect = 6e-41
Identities = 79/101 (78%), Positives = 82/101 (81%)
Frame = +2
Query: 2 DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133
Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
Q KIREEYPDRIMNTFSVVPSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPK 174
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +1
Query: 307 SDTVVEPY-MHLSRHHLVENT 366
SDTVVEPY LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin)
Length = 447
Score = 163 bits (412), Expect = 1e-40
Identities = 78/101 (77%), Positives = 82/101 (81%)
Frame = +2
Query: 2 DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133
Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
Q KIREEYPDRIMNT+SVVPSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK 174
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +1
Query: 307 SDTVVEPY-MHLSRHHLVENT 366
SDTVVEPY LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 163 bits (412), Expect = 1e-40
Identities = 78/101 (77%), Positives = 82/101 (81%)
Frame = +2
Query: 2 DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE+ESCDCLQGF
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGF 133
Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
Q KIREEYPDRIMNTFSVVPSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPK 174
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +1
Query: 307 SDTVVEPY-MHLSRHHLVENT 366
SDTVVEPY LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|O17449|TBB1_MANSE Tubulin beta-1 chain (Beta-1 tubulin)
Length = 447
Score = 163 bits (412), Expect = 1e-40
Identities = 78/101 (77%), Positives = 82/101 (81%)
Frame = +2
Query: 2 DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133
Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
Q KIREEYPDRIMNT+SVVPSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK 174
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +1
Query: 307 SDTVVEPY-MHLSRHHLVENT 366
SDTVVEPY LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin)
Length = 446
Score = 162 bits (411), Expect = 2e-40
Identities = 78/101 (77%), Positives = 81/101 (80%)
Frame = +2
Query: 2 DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE CDCLQGF
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQGF 133
Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
Q KIREEYPDRIMNTFSVVPSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPK 174
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +1
Query: 307 SDTVVEPY-MHLSRHHLVENT 366
SDTVVEPY LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|P13602|TBB2_XENLA Tubulin beta-2 chain (Beta-2 tubulin)
Length = 443
Score = 162 bits (409), Expect = 3e-40
Identities = 77/101 (76%), Positives = 82/101 (81%)
Frame = +2
Query: 2 DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE+ESCDCLQGF
Sbjct: 74 DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGF 133
Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
Q KIREEYPDRIMNTFSV+PSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPK 174
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +1
Query: 307 SDTVVEPY-MHLSRHHLVENT 366
SDTVVEPY LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|P41937|TBB4_CAEEL Tubulin beta-4 chain (Beta-4 tubulin)
Length = 444
Score = 162 bits (409), Expect = 3e-40
Identities = 79/101 (78%), Positives = 81/101 (80%)
Frame = +2
Query: 2 DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
DSVRAGPFGQLFRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLDVVRKEAESCDCLQGF
Sbjct: 74 DSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVVRKEAESCDCLQGF 133
Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
Q KIREEYPDRIM TFSVVPSPK
Sbjct: 134 QMTHSLGGGTGSGMGTLLISKIREEYPDRIMMTFSVVPSPK 174
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +1
Query: 307 SDTVVEPY-MHLSRHHLVENT 366
SDTVVEPY LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,867,734
Number of Sequences: 369166
Number of extensions: 775923
Number of successful extensions: 2858
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2628
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1758783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)