Planaria EST Database


DrC_02050

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02050
         (402 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11833|TBB_PARLI  Tubulin beta chain (Beta tubulin)            164   6e-41
sp|P30883|TBB4_XENLA  Tubulin beta-4 chain                        164   6e-41
sp|Q7JJU6|TBB2_PANTR  Tubulin beta-2 chain >gi|56754798|sp|P...   164   6e-41
sp|P68372|TBBX_MOUSE  Tubulin beta-? chain >gi|55977480|sp|P...   164   6e-41
sp|Q24560|TBB1_DROME  Tubulin beta-1 chain (Beta-1 tubulin)       163   1e-40
sp|P02554|TBB_PIG  Tubulin beta chain                             163   1e-40
sp|O17449|TBB1_MANSE  Tubulin beta-1 chain (Beta-1 tubulin)       163   1e-40
sp|P36221|TBB1_NOTCO  Tubulin beta-1 chain (Beta-1 tubulin)       162   2e-40
sp|P13602|TBB2_XENLA  Tubulin beta-2 chain (Beta-2 tubulin)       162   3e-40
sp|P41937|TBB4_CAEEL  Tubulin beta-4 chain (Beta-4 tubulin)       162   3e-40
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
          Length = 447

 Score =  164 bits (415), Expect = 6e-41
 Identities = 79/101 (78%), Positives = 82/101 (81%)
 Frame = +2

Query: 2   DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
           DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF
Sbjct: 74  DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133

Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
           Q                   KIREEYPDRIMNTFSVVPSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPK 174

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 307 SDTVVEPY-MHLSRHHLVENT 366
           SDTVVEPY   LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
          Length = 445

 Score =  164 bits (415), Expect = 6e-41
 Identities = 79/101 (78%), Positives = 82/101 (81%)
 Frame = +2

Query: 2   DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
           DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF
Sbjct: 74  DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133

Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
           Q                   KIREEYPDRIMNTFSVVPSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPK 174

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 307 SDTVVEPY-MHLSRHHLVENT 366
           SDTVVEPY   LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
 sp|P69895|TBB2_MACMU Tubulin beta-2 chain
 sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
 sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
 sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
 sp|P69897|TBB5_RAT Tubulin beta-5 chain
 sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
           tubulin)
          Length = 444

 Score =  164 bits (415), Expect = 6e-41
 Identities = 79/101 (78%), Positives = 82/101 (81%)
 Frame = +2

Query: 2   DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
           DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF
Sbjct: 74  DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133

Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
           Q                   KIREEYPDRIMNTFSVVPSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPK 174

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 307 SDTVVEPY-MHLSRHHLVENT 366
           SDTVVEPY   LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
 sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
          Length = 445

 Score =  164 bits (415), Expect = 6e-41
 Identities = 79/101 (78%), Positives = 82/101 (81%)
 Frame = +2

Query: 2   DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
           DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF
Sbjct: 74  DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133

Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
           Q                   KIREEYPDRIMNTFSVVPSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPK 174

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 307 SDTVVEPY-MHLSRHHLVENT 366
           SDTVVEPY   LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin)
          Length = 447

 Score =  163 bits (412), Expect = 1e-40
 Identities = 78/101 (77%), Positives = 82/101 (81%)
 Frame = +2

Query: 2   DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
           DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF
Sbjct: 74  DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133

Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
           Q                   KIREEYPDRIMNT+SVVPSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK 174

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 307 SDTVVEPY-MHLSRHHLVENT 366
           SDTVVEPY   LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|P02554|TBB_PIG Tubulin beta chain
          Length = 445

 Score =  163 bits (412), Expect = 1e-40
 Identities = 78/101 (77%), Positives = 82/101 (81%)
 Frame = +2

Query: 2   DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
           DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE+ESCDCLQGF
Sbjct: 74  DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGF 133

Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
           Q                   KIREEYPDRIMNTFSVVPSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPK 174

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 307 SDTVVEPY-MHLSRHHLVENT 366
           SDTVVEPY   LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|O17449|TBB1_MANSE Tubulin beta-1 chain (Beta-1 tubulin)
          Length = 447

 Score =  163 bits (412), Expect = 1e-40
 Identities = 78/101 (77%), Positives = 82/101 (81%)
 Frame = +2

Query: 2   DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
           DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF
Sbjct: 74  DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133

Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
           Q                   KIREEYPDRIMNT+SVVPSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPK 174

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 307 SDTVVEPY-MHLSRHHLVENT 366
           SDTVVEPY   LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin)
          Length = 446

 Score =  162 bits (411), Expect = 2e-40
 Identities = 78/101 (77%), Positives = 81/101 (80%)
 Frame = +2

Query: 2   DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
           DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE CDCLQGF
Sbjct: 74  DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQGF 133

Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
           Q                   KIREEYPDRIMNTFSVVPSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPK 174

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 307 SDTVVEPY-MHLSRHHLVENT 366
           SDTVVEPY   LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|P13602|TBB2_XENLA Tubulin beta-2 chain (Beta-2 tubulin)
          Length = 443

 Score =  162 bits (409), Expect = 3e-40
 Identities = 77/101 (76%), Positives = 82/101 (81%)
 Frame = +2

Query: 2   DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
           DSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE+ESCDCLQGF
Sbjct: 74  DSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGF 133

Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
           Q                   KIREEYPDRIMNTFSV+PSPK
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPK 174

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 307 SDTVVEPY-MHLSRHHLVENT 366
           SDTVVEPY   LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
>sp|P41937|TBB4_CAEEL Tubulin beta-4 chain (Beta-4 tubulin)
          Length = 444

 Score =  162 bits (409), Expect = 3e-40
 Identities = 79/101 (78%), Positives = 81/101 (80%)
 Frame = +2

Query: 2   DSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 181
           DSVRAGPFGQLFRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLDVVRKEAESCDCLQGF
Sbjct: 74  DSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVVRKEAESCDCLQGF 133

Query: 182 QXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 304
           Q                   KIREEYPDRIM TFSVVPSPK
Sbjct: 134 QMTHSLGGGTGSGMGTLLISKIREEYPDRIMMTFSVVPSPK 174

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 307 SDTVVEPY-MHLSRHHLVENT 366
           SDTVVEPY   LS H LVENT
Sbjct: 176 SDTVVEPYNATLSVHQLVENT 196
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,867,734
Number of Sequences: 369166
Number of extensions: 775923
Number of successful extensions: 2858
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2628
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1758783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)