Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02049
(620 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch 42 0.001
sp|P46821|MAP1B_HUMAN Microtubule-associated protein 1B (MA... 39 0.014
sp|P15205|MAP1B_RAT Microtubule-associated protein 1B (MAP ... 39 0.014
sp|P14873|MAP1B_MOUSE Microtubule-associated protein 1B (MA... 39 0.014
sp|P14400|ENP1_TORCA Electromotor neuron-associated protein 1 35 0.12
sp|P34926|MAP1A_RAT Microtubule-associated protein 1A (MAP ... 35 0.15
sp|Q9QYR6|MAP1A_MOUSE Microtubule-associated protein 1A (MA... 35 0.15
sp|P78559|MAP1A_HUMAN Microtubule-associated protein 1A (MA... 35 0.15
sp|P14401|ENP2_TORCA Electromotor neuron-associated protein 2 33 0.45
sp|Q8KET0|XERD_CHLTE Tyrosine recombinase xerD 31 2.2
>sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch
Length = 5412
Score = 42.0 bits (97), Expect = 0.001
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Frame = +2
Query: 167 LDNIEHSAE-FNVFVDDVCAMLQITPVAH--QDIPLLATIATRNPSLYFFLDRGSSASPA 337
+D ++ S+E N F+D + M+ T + + ++ I +P+LY F G A
Sbjct: 209 VDVLDTSSECINGFIDYLAPMVMPTSLRELLETSDVVGNIRFTHPTLYVF--PGGQGDAA 266
Query: 338 LLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNLLGL 478
L ++GF ML++ GF+R + ++ ++D L++ + +N+ GL
Sbjct: 267 LFGINGFNMLVDGGFNRKACFWDFARHLDRLDAVLMTRLNNSNVQGL 313
>sp|P46821|MAP1B_HUMAN Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1 light
chain LC1]
Length = 2468
Score = 38.5 bits (88), Expect = 0.014
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = +2
Query: 290 PSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNL 469
P Y F G AL ++GF ML+N G R + +++ ++D LL+HI +NL
Sbjct: 260 PCCYIF--PGGRGDSALFAVNGFNMLINGGSERKSCFWKLIRHLDRVDSILLTHIGDDNL 317
Query: 470 LGLTS 484
G+ S
Sbjct: 318 PGINS 322
>sp|P15205|MAP1B_RAT Microtubule-associated protein 1B (MAP 1B) (Neuraxin) [Contains:
MAP1 light chain LC1]
Length = 2459
Score = 38.5 bits (88), Expect = 0.014
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = +2
Query: 290 PSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNL 469
P Y F G AL ++GF ML+N G R + +++ ++D LL+HI +NL
Sbjct: 260 PCCYIF--PGGRGDSALFAVNGFNMLINGGSERKSCFWKLIRHLDRVDSILLTHIGDDNL 317
Query: 470 LGLTS 484
G+ S
Sbjct: 318 PGINS 322
>sp|P14873|MAP1B_MOUSE Microtubule-associated protein 1B (MAP 1B) (MAP1.2) (MAP1(X))
[Contains: MAP1 light chain LC1]
Length = 2464
Score = 38.5 bits (88), Expect = 0.014
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = +2
Query: 290 PSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNL 469
P Y F G AL ++GF ML+N G R + +++ ++D LL+HI +NL
Sbjct: 260 PCCYIF--PGGRGDSALFAVNGFNMLINGGSERKSCFWKLIRHLDRVDSILLTHIGDDNL 317
Query: 470 LGLTS 484
G+ S
Sbjct: 318 PGINS 322
>sp|P14400|ENP1_TORCA Electromotor neuron-associated protein 1
Length = 721
Score = 35.4 bits (80), Expect = 0.12
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +2
Query: 290 PSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNL 469
P Y F G AL ++GF ML+N G R + +++ ++D LL+H +NL
Sbjct: 265 PCCYIF--PGGRGDSALFAVNGFNMLINGGSDRRSCFWKLVRHLDRVDSILLTHNGADNL 322
Query: 470 LGLTS 484
G+ S
Sbjct: 323 PGVNS 327
>sp|P34926|MAP1A_RAT Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1 light
chain LC2]
Length = 2774
Score = 35.0 bits (79), Expect = 0.15
Identities = 25/96 (26%), Positives = 46/96 (47%)
Frame = +2
Query: 290 PSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNL 469
P Y F G AL ++GF +L++ G R + +++ +ID LL+HI +NL
Sbjct: 38 PCCYIF--PGGRGDSALFAVNGFNILVDGGSDRKSCFWKLVRHLDRIDSVLLTHIGADNL 95
Query: 470 LGLTSYAMADSVVKINHLFVPGEINFTDKVSHSGNP 577
G+ + V ++ G +++D V + +P
Sbjct: 96 PGING-LLQRKVAELEEEQSQGSSSYSDWVKNLISP 130
>sp|Q9QYR6|MAP1A_MOUSE Microtubule-associated protein 1A (MAP 1A)
Length = 1021
Score = 35.0 bits (79), Expect = 0.15
Identities = 25/96 (26%), Positives = 46/96 (47%)
Frame = +2
Query: 290 PSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNL 469
P Y F G AL ++GF +L++ G R + +++ +ID LL+HI +NL
Sbjct: 262 PCCYIF--PGGRGDSALFAVNGFNILVDGGSDRKSCFWKLVRHLDRIDSVLLTHIGADNL 319
Query: 470 LGLTSYAMADSVVKINHLFVPGEINFTDKVSHSGNP 577
G+ + V ++ G +++D V + +P
Sbjct: 320 PGING-LLQRKVAELEEEQSQGSSSYSDWVKNLISP 354
>sp|P78559|MAP1A_HUMAN Microtubule-associated protein 1A (MAP 1A) (Proliferation-related
protein p80) [Contains: MAP1 light chain LC2]
Length = 2805
Score = 35.0 bits (79), Expect = 0.15
Identities = 25/96 (26%), Positives = 46/96 (47%)
Frame = +2
Query: 290 PSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNL 469
P Y F G AL ++GF +L++ G R + +++ +ID LL+HI +NL
Sbjct: 38 PCCYIF--PGGRGDSALFAVNGFNILVDGGSDRKSCFWKLVRHLDRIDSVLLTHIGADNL 95
Query: 470 LGLTSYAMADSVVKINHLFVPGEINFTDKVSHSGNP 577
G+ + V ++ G +++D V + +P
Sbjct: 96 PGING-LLQRKVAELEEEQSQGSSSYSDWVKNLISP 130
>sp|P14401|ENP2_TORCA Electromotor neuron-associated protein 2
Length = 350
Score = 33.5 bits (75), Expect = 0.45
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +2
Query: 290 PSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNL 469
P Y F G AL ++GF +L++ G R + +++ +ID LL+HI +NL
Sbjct: 33 PCCYIF--PGGRGDSALFAVNGFNILVDGGSERKSCFWKLVRHLDRIDSILLTHIGADNL 90
Query: 470 LGL 478
G+
Sbjct: 91 PGI 93
>sp|Q8KET0|XERD_CHLTE Tyrosine recombinase xerD
Length = 304
Score = 31.2 bits (69), Expect = 2.2
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +2
Query: 263 LLATIATRNPSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGL 442
L +AT NP+ + + P++LT++ A LL+ R+P S L+ ++
Sbjct: 91 LTERLATMNPAENIHQPKLARYLPSVLTIEEMATLLDAPLKRHPTSTFMLRDKAMLEFLY 150
Query: 443 LSHITYNNLLGLT--SYAMADSVVKI 514
+ + + LLGL+ + M D V++
Sbjct: 151 ATGVRVSELLGLSRLNLHMDDGFVRV 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,208,578
Number of Sequences: 369166
Number of extensions: 1470726
Number of successful extensions: 3722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3721
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4877307000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)