Planaria EST Database


DrC_02049

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02049
         (620 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9W596|FUTSC_DROME  Microtubule-associated protein futsch       42   0.001
sp|P46821|MAP1B_HUMAN  Microtubule-associated protein 1B (MA...    39   0.014
sp|P15205|MAP1B_RAT  Microtubule-associated protein 1B (MAP ...    39   0.014
sp|P14873|MAP1B_MOUSE  Microtubule-associated protein 1B (MA...    39   0.014
sp|P14400|ENP1_TORCA  Electromotor neuron-associated protein 1     35   0.12 
sp|P34926|MAP1A_RAT  Microtubule-associated protein 1A (MAP ...    35   0.15 
sp|Q9QYR6|MAP1A_MOUSE  Microtubule-associated protein 1A (MA...    35   0.15 
sp|P78559|MAP1A_HUMAN  Microtubule-associated protein 1A (MA...    35   0.15 
sp|P14401|ENP2_TORCA  Electromotor neuron-associated protein 2     33   0.45 
sp|Q8KET0|XERD_CHLTE  Tyrosine recombinase xerD                    31   2.2  
>sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch
          Length = 5412

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
 Frame = +2

Query: 167 LDNIEHSAE-FNVFVDDVCAMLQITPVAH--QDIPLLATIATRNPSLYFFLDRGSSASPA 337
           +D ++ S+E  N F+D +  M+  T +    +   ++  I   +P+LY F   G     A
Sbjct: 209 VDVLDTSSECINGFIDYLAPMVMPTSLRELLETSDVVGNIRFTHPTLYVF--PGGQGDAA 266

Query: 338 LLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNLLGL 478
           L  ++GF ML++ GF+R      + ++  ++D  L++ +  +N+ GL
Sbjct: 267 LFGINGFNMLVDGGFNRKACFWDFARHLDRLDAVLMTRLNNSNVQGL 313
>sp|P46821|MAP1B_HUMAN Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1 light
           chain LC1]
          Length = 2468

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = +2

Query: 290 PSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNL 469
           P  Y F   G     AL  ++GF ML+N G  R     + +++  ++D  LL+HI  +NL
Sbjct: 260 PCCYIF--PGGRGDSALFAVNGFNMLINGGSERKSCFWKLIRHLDRVDSILLTHIGDDNL 317

Query: 470 LGLTS 484
            G+ S
Sbjct: 318 PGINS 322
>sp|P15205|MAP1B_RAT Microtubule-associated protein 1B (MAP 1B) (Neuraxin) [Contains:
           MAP1 light chain LC1]
          Length = 2459

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = +2

Query: 290 PSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNL 469
           P  Y F   G     AL  ++GF ML+N G  R     + +++  ++D  LL+HI  +NL
Sbjct: 260 PCCYIF--PGGRGDSALFAVNGFNMLINGGSERKSCFWKLIRHLDRVDSILLTHIGDDNL 317

Query: 470 LGLTS 484
            G+ S
Sbjct: 318 PGINS 322
>sp|P14873|MAP1B_MOUSE Microtubule-associated protein 1B (MAP 1B) (MAP1.2) (MAP1(X))
           [Contains: MAP1 light chain LC1]
          Length = 2464

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = +2

Query: 290 PSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNL 469
           P  Y F   G     AL  ++GF ML+N G  R     + +++  ++D  LL+HI  +NL
Sbjct: 260 PCCYIF--PGGRGDSALFAVNGFNMLINGGSERKSCFWKLIRHLDRVDSILLTHIGDDNL 317

Query: 470 LGLTS 484
            G+ S
Sbjct: 318 PGINS 322
>sp|P14400|ENP1_TORCA Electromotor neuron-associated protein 1
          Length = 721

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = +2

Query: 290 PSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNL 469
           P  Y F   G     AL  ++GF ML+N G  R     + +++  ++D  LL+H   +NL
Sbjct: 265 PCCYIF--PGGRGDSALFAVNGFNMLINGGSDRRSCFWKLVRHLDRVDSILLTHNGADNL 322

Query: 470 LGLTS 484
            G+ S
Sbjct: 323 PGVNS 327
>sp|P34926|MAP1A_RAT Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1 light
           chain LC2]
          Length = 2774

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 25/96 (26%), Positives = 46/96 (47%)
 Frame = +2

Query: 290 PSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNL 469
           P  Y F   G     AL  ++GF +L++ G  R     + +++  +ID  LL+HI  +NL
Sbjct: 38  PCCYIF--PGGRGDSALFAVNGFNILVDGGSDRKSCFWKLVRHLDRIDSVLLTHIGADNL 95

Query: 470 LGLTSYAMADSVVKINHLFVPGEINFTDKVSHSGNP 577
            G+    +   V ++      G  +++D V +  +P
Sbjct: 96  PGING-LLQRKVAELEEEQSQGSSSYSDWVKNLISP 130
>sp|Q9QYR6|MAP1A_MOUSE Microtubule-associated protein 1A (MAP 1A)
          Length = 1021

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 25/96 (26%), Positives = 46/96 (47%)
 Frame = +2

Query: 290 PSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNL 469
           P  Y F   G     AL  ++GF +L++ G  R     + +++  +ID  LL+HI  +NL
Sbjct: 262 PCCYIF--PGGRGDSALFAVNGFNILVDGGSDRKSCFWKLVRHLDRIDSVLLTHIGADNL 319

Query: 470 LGLTSYAMADSVVKINHLFVPGEINFTDKVSHSGNP 577
            G+    +   V ++      G  +++D V +  +P
Sbjct: 320 PGING-LLQRKVAELEEEQSQGSSSYSDWVKNLISP 354
>sp|P78559|MAP1A_HUMAN Microtubule-associated protein 1A (MAP 1A) (Proliferation-related
           protein p80) [Contains: MAP1 light chain LC2]
          Length = 2805

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 25/96 (26%), Positives = 46/96 (47%)
 Frame = +2

Query: 290 PSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNL 469
           P  Y F   G     AL  ++GF +L++ G  R     + +++  +ID  LL+HI  +NL
Sbjct: 38  PCCYIF--PGGRGDSALFAVNGFNILVDGGSDRKSCFWKLVRHLDRIDSVLLTHIGADNL 95

Query: 470 LGLTSYAMADSVVKINHLFVPGEINFTDKVSHSGNP 577
            G+    +   V ++      G  +++D V +  +P
Sbjct: 96  PGING-LLQRKVAELEEEQSQGSSSYSDWVKNLISP 130
>sp|P14401|ENP2_TORCA Electromotor neuron-associated protein 2
          Length = 350

 Score = 33.5 bits (75), Expect = 0.45
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +2

Query: 290 PSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGLLSHITYNNL 469
           P  Y F   G     AL  ++GF +L++ G  R     + +++  +ID  LL+HI  +NL
Sbjct: 33  PCCYIF--PGGRGDSALFAVNGFNILVDGGSERKSCFWKLVRHLDRIDSILLTHIGADNL 90

Query: 470 LGL 478
            G+
Sbjct: 91  PGI 93
>sp|Q8KET0|XERD_CHLTE Tyrosine recombinase xerD
          Length = 304

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
 Frame = +2

Query: 263 LLATIATRNPSLYFFLDRGSSASPALLTLDGFAMLLNCGFSRNPESLRYLKYFQQIDVGL 442
           L   +AT NP+      + +   P++LT++  A LL+    R+P S   L+    ++   
Sbjct: 91  LTERLATMNPAENIHQPKLARYLPSVLTIEEMATLLDAPLKRHPTSTFMLRDKAMLEFLY 150

Query: 443 LSHITYNNLLGLT--SYAMADSVVKI 514
            + +  + LLGL+  +  M D  V++
Sbjct: 151 ATGVRVSELLGLSRLNLHMDDGFVRV 176
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,208,578
Number of Sequences: 369166
Number of extensions: 1470726
Number of successful extensions: 3722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3721
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4877307000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)