Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02038
(934 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ... 34 0.52
sp|P26211|ARBG_ERWCH Beta-glucoside operon antiterminator 34 0.67
sp|Q8K9L5|RSMC_BUCAP Ribosomal RNA small subunit methyltran... 33 0.88
sp|P15564|YMN4_PODAN Hypothetical 50.9 kDa protein in ND4 i... 32 3.3
sp|P15582|NU4M_PODAN NADH-ubiquinone oxidoreductase chain 4... 31 5.7
sp|Q9XI60|LPP2_ARATH Lipid phosphate phosphatase 2 (AtLPP2)... 30 9.7
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
Length = 864
Score = 34.3 bits (77), Expect = 0.52
Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = +1
Query: 280 YNKIKSTTLIQICSIIKLQSIKFQLMIYIKNIQICSIIKLQSIKFQLMIYIKNSINNIKL 459
YN K T + +++L+ K +L IKN++ +++ IK Q Y K +KL
Sbjct: 185 YNNFKKTVEEKRARVLELKKDKEKLEDEIKNLE----KRIKDIKDQFDEYEKKRNQYLKL 240
Query: 460 QFN-KTKYNQQNFFHRMIQKLKFYKQNRIKQDQDLNVIRLKAHIQRSYKCHWIKHKS 627
K K + N +R I++L+ +N + ++++N + +I+ ++ + + KS
Sbjct: 241 TTTLKIKEGELNELNRSIEELRKQTENMDQLEKEINELENLRNIKLKFEKYEVLAKS 297
>sp|P26211|ARBG_ERWCH Beta-glucoside operon antiterminator
Length = 283
Score = 33.9 bits (76), Expect = 0.67
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Frame = +1
Query: 442 INNIKLQFNKTKYNQQNF-FHRMIQKLKFYKQNRI------KQDQDLNVIRLKAHIQRSY 600
+N +K Q N YN+Q F +HR + LKF+ Q + +D+ L+ + +K +Y
Sbjct: 183 LNIVKYQLN-LDYNEQAFSYHRFVTHLKFFAQRLLGRTPVFSEDESLHDV-VKEKYTLAY 240
Query: 601 KCHWIKHKSQINV*LRLALTVEIRWIGFASHHIGRIR 711
C K Q ++ L T+ + F + HI R+R
Sbjct: 241 HC---AEKIQDHIMLHYDYTLTKEELMFLAIHIERVR 274
>sp|Q8K9L5|RSMC_BUCAP Ribosomal RNA small subunit methyltransferase C (rRNA
(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207
methyltransferase)
Length = 336
Score = 33.5 bits (75), Expect = 0.88
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 268 LLIHYNKIKSTTLIQICSIIKLQSIKFQLMIYIKN---IQICSIIKLQSIKFQLMIYIKN 438
L+ ++ K KS Q+ +I+ IK ++ I N ++ +I +SIK + + +
Sbjct: 79 LIYYWPKNKSEARFQLFNILSFLPIKSEIFIVGSNSSGVKSAKLILEESIKLKKIDNANH 138
Query: 439 SINNIKLQFNKTKYNQQNFFHRMIQK 516
SI + NKTK+ + FF I K
Sbjct: 139 SILMSGILINKTKFKLEKFFKIHIWK 164
>sp|P15564|YMN4_PODAN Hypothetical 50.9 kDa protein in ND4 intron 1
Length = 449
Score = 31.6 bits (70), Expect = 3.3
Identities = 26/65 (40%), Positives = 33/65 (50%)
Frame = -1
Query: 352 IEILLTEVLLLNKFV*A*LILFYCNGLIIFMKSMLQNLIFMSSAYGLKNSINSVAIQYRI 173
I ILL E LLL F+ ++LFY IF +S+L L + GL S N V + I
Sbjct: 147 IIILLLETLLLAVFLVLDVLLFY-----IFFESILPPLFIL---IGLFGSSNKVRASFYI 198
Query: 172 VLLTF 158
L TF
Sbjct: 199 FLYTF 203
>sp|P15582|NU4M_PODAN NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit
4)
Length = 519
Score = 30.8 bits (68), Expect = 5.7
Identities = 26/66 (39%), Positives = 33/66 (50%)
Frame = -1
Query: 352 IEILLTEVLLLNKFV*A*LILFYCNGLIIFMKSMLQNLIFMSSAYGLKNSINSVAIQYRI 173
I ILL E LLL F+ ++LFY IF +S+L L + GL S N V + I
Sbjct: 147 IIILLLETLLLAVFLVLDVLLFY-----IFFESILPPLFIL---IGLFGSSNKVRASFYI 198
Query: 172 VLLTFL 155
L T L
Sbjct: 199 FLYTLL 204
>sp|Q9XI60|LPP2_ARATH Lipid phosphate phosphatase 2 (AtLPP2) (Phosphatidic acid
phosphatase 2) (AtPAP2) (Prenyl diphosphate phosphatase)
Length = 290
Score = 30.0 bits (66), Expect = 9.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +3
Query: 771 FWIIDFMLCICMFCILCVFEFVELNLYFSHIALTNL 878
FW + + + F ++CV+ F+ ++Y H A+ L
Sbjct: 68 FWAVPLIAVVLPFAVICVYYFIRNDVYDLHHAILGL 103
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,863,945
Number of Sequences: 369166
Number of extensions: 1444948
Number of successful extensions: 3540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3531
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9606826000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)