Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02033
(514 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8CJG0|I2C2_MOUSE Eukaryotic translation initiation fact... 87 2e-17
sp|Q9QZ81|I2C2_RAT Eukaryotic translation initiation factor... 87 2e-17
sp|O77503|I2C2_RABIT Eukaryotic translation initiation fact... 87 2e-17
sp|Q9UKV8|I2C2_HUMAN Eukaryotic translation initiation fact... 87 2e-17
sp|O04379|AGO1_ARATH Argonaute protein 87 3e-17
sp|Q9H9G7|I2C3_HUMAN Eukaryotic translation initiation fact... 84 3e-16
sp|Q8CJF9|I2C3_MOUSE Eukaryotic translation initiation fact... 84 3e-16
sp|Q9HCK5|I2C4_HUMAN Eukaryotic translation initiation fact... 79 6e-15
sp|Q8CJG1|I2C1_MOUSE Eukaryotic translation initiation fact... 79 6e-15
sp|Q9UL18|I2C1_HUMAN Eukaryotic translation initiation fact... 79 6e-15
>sp|Q8CJG0|I2C2_MOUSE Eukaryotic translation initiation factor 2C 2 (eIF2C 2) (eIF-2C 2)
(Argonaute-2) (Slicer protein) (Piwi/argonaute family
protein meIF2C2)
Length = 860
Score = 87.0 bits (214), Expect = 2e-17
Identities = 43/81 (53%), Positives = 53/81 (65%)
Frame = -1
Query: 436 AHYHVLFDENNWGSDDLQAFTYFLCHVYARCTRSVSYPAPTYYAHLAAFRGRTLIGQTDD 257
+HYHVL+D+N + SD+LQ TY LCH Y RCTRSVS PAP YYAHL AFR R + +
Sbjct: 764 SHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEH 823
Query: 256 DTSSVSSGHSAKIDSGDSQIL 194
D S+ S S + + D Q L
Sbjct: 824 D-SAEGSHTSGQSNGRDHQAL 843
>sp|Q9QZ81|I2C2_RAT Eukaryotic translation initiation factor 2C 2 (eIF2C 2) (eIF-2C 2)
(Argonaute-2) (Golgi ER protein 95 kDa) (GERp95)
Length = 860
Score = 87.0 bits (214), Expect = 2e-17
Identities = 43/81 (53%), Positives = 53/81 (65%)
Frame = -1
Query: 436 AHYHVLFDENNWGSDDLQAFTYFLCHVYARCTRSVSYPAPTYYAHLAAFRGRTLIGQTDD 257
+HYHVL+D+N + SD+LQ TY LCH Y RCTRSVS PAP YYAHL AFR R + +
Sbjct: 764 SHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEH 823
Query: 256 DTSSVSSGHSAKIDSGDSQIL 194
D S+ S S + + D Q L
Sbjct: 824 D-SAEGSHTSGQSNGRDHQAL 843
>sp|O77503|I2C2_RABIT Eukaryotic translation initiation factor 2C 2 (eIF2C 2) (eIF-2C 2)
(Argonaute-2)
Length = 840
Score = 87.0 bits (214), Expect = 2e-17
Identities = 43/81 (53%), Positives = 53/81 (65%)
Frame = -1
Query: 436 AHYHVLFDENNWGSDDLQAFTYFLCHVYARCTRSVSYPAPTYYAHLAAFRGRTLIGQTDD 257
+HYHVL+D+N + SD+LQ TY LCH Y RCTRSVS PAP YYAHL AFR R + +
Sbjct: 744 SHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEH 803
Query: 256 DTSSVSSGHSAKIDSGDSQIL 194
D S+ S S + + D Q L
Sbjct: 804 D-SAEGSHTSGQSNGRDHQAL 823
>sp|Q9UKV8|I2C2_HUMAN Eukaryotic translation initiation factor 2C 2 (eIF2C 2) (eIF-2C 2)
(Argonaute-2) (Slicer protein) (PAZ Piwi domain protein)
(PPD)
Length = 851
Score = 87.0 bits (214), Expect = 2e-17
Identities = 43/81 (53%), Positives = 53/81 (65%)
Frame = -1
Query: 436 AHYHVLFDENNWGSDDLQAFTYFLCHVYARCTRSVSYPAPTYYAHLAAFRGRTLIGQTDD 257
+HYHVL+D+N + SD+LQ TY LCH Y RCTRSVS PAP YYAHL AFR R + +
Sbjct: 755 SHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEH 814
Query: 256 DTSSVSSGHSAKIDSGDSQIL 194
D S+ S S + + D Q L
Sbjct: 815 D-SAEGSHTSGQSNGRDHQAL 834
>sp|O04379|AGO1_ARATH Argonaute protein
Length = 1048
Score = 86.7 bits (213), Expect = 3e-17
Identities = 41/72 (56%), Positives = 51/72 (70%)
Frame = -1
Query: 436 AHYHVLFDENNWGSDDLQAFTYFLCHVYARCTRSVSYPAPTYYAHLAAFRGRTLIGQTDD 257
AHYHVL+DENN+ +D LQ+ T LC+ YARCTRSVS P YYAHLAAFR R +
Sbjct: 942 AHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETS 1001
Query: 256 DTSSVSSGHSAK 221
D+ S++SG A+
Sbjct: 1002 DSGSMASGSMAR 1013
>sp|Q9H9G7|I2C3_HUMAN Eukaryotic translation initiation factor 2C 3 (eIF2C 3) (eIF-2C 3)
(Argonaute-3)
Length = 860
Score = 83.6 bits (205), Expect = 3e-16
Identities = 42/81 (51%), Positives = 53/81 (65%)
Frame = -1
Query: 436 AHYHVLFDENNWGSDDLQAFTYFLCHVYARCTRSVSYPAPTYYAHLAAFRGRTLIGQTDD 257
+HYHVL+D+N + +D+LQ TY LCH Y RCTRSVS PAP YYAHL AFR R + +
Sbjct: 764 SHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEH 823
Query: 256 DTSSVSSGHSAKIDSGDSQIL 194
D S+ S S + + D Q L
Sbjct: 824 D-SAEGSHVSGQSNGRDPQAL 843
>sp|Q8CJF9|I2C3_MOUSE Eukaryotic translation initiation factor 2C 3 (eIF2C 3) (eIF-2C 3)
(Argonaute-3) (Piwi/argonaute family protein meIF2C3)
Length = 860
Score = 83.6 bits (205), Expect = 3e-16
Identities = 42/81 (51%), Positives = 53/81 (65%)
Frame = -1
Query: 436 AHYHVLFDENNWGSDDLQAFTYFLCHVYARCTRSVSYPAPTYYAHLAAFRGRTLIGQTDD 257
+HYHVL+D+N + +D+LQ TY LCH Y RCTRSVS PAP YYAHL AFR R + +
Sbjct: 764 SHYHVLWDDNFFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEH 823
Query: 256 DTSSVSSGHSAKIDSGDSQIL 194
D S+ S S + + D Q L
Sbjct: 824 D-SAEGSHVSGQSNGRDPQAL 843
>sp|Q9HCK5|I2C4_HUMAN Eukaryotic translation initiation factor 2C 4 (eIF2C 4) (eIF-2C 4)
(Argonaute-4)
Length = 861
Score = 79.0 bits (193), Expect = 6e-15
Identities = 41/81 (50%), Positives = 51/81 (62%)
Frame = -1
Query: 436 AHYHVLFDENNWGSDDLQAFTYFLCHVYARCTRSVSYPAPTYYAHLAAFRGRTLIGQTDD 257
+HY VL+D+N + +D+LQ TY LCH Y RCTRSVS PAP YYA L AFR R + D
Sbjct: 765 SHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDH 824
Query: 256 DTSSVSSGHSAKIDSGDSQIL 194
D S+ S S + + D Q L
Sbjct: 825 D-SAEGSHVSGQSNGRDPQAL 844
>sp|Q8CJG1|I2C1_MOUSE Eukaryotic translation initiation factor 2C 1 (eIF2C 1) (eIF-2C 1)
(Argonaute-1) (Piwi/argonaute family protein meIF2C1)
Length = 857
Score = 79.0 bits (193), Expect = 6e-15
Identities = 40/81 (49%), Positives = 51/81 (62%)
Frame = -1
Query: 436 AHYHVLFDENNWGSDDLQAFTYFLCHVYARCTRSVSYPAPTYYAHLAAFRGRTLIGQTDD 257
+HY+VL+D+N + +D+LQ TY LCH Y RCTRSVS PAP YYA L AFR R + +
Sbjct: 761 SHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEH 820
Query: 256 DTSSVSSGHSAKIDSGDSQIL 194
D S S S + + D Q L
Sbjct: 821 D-SGEGSHISGQSNGRDPQAL 840
>sp|Q9UL18|I2C1_HUMAN Eukaryotic translation initiation factor 2C 1 (eIF2C 1) (eIF-2C 1)
(Argonaute-1) (Putative RNA-binding protein Q99)
Length = 857
Score = 79.0 bits (193), Expect = 6e-15
Identities = 40/81 (49%), Positives = 51/81 (62%)
Frame = -1
Query: 436 AHYHVLFDENNWGSDDLQAFTYFLCHVYARCTRSVSYPAPTYYAHLAAFRGRTLIGQTDD 257
+HY+VL+D+N + +D+LQ TY LCH Y RCTRSVS PAP YYA L AFR R + +
Sbjct: 761 SHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEH 820
Query: 256 DTSSVSSGHSAKIDSGDSQIL 194
D S S S + + D Q L
Sbjct: 821 D-SGEGSHISGQSNGRDPQAL 840
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,004,376
Number of Sequences: 369166
Number of extensions: 785556
Number of successful extensions: 2151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2151
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3304927425
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)