Planaria EST Database


DrC_02027

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02027
         (766 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q00277|GPX1_SCHMA  Glutathione peroxidase (GPX)                116   6e-26
sp|P52032|GPX1_ARATH  Phospholipid hydroperoxide glutathione...   107   5e-23
sp|P74250|GPO_SYNY3  Putative glutathione peroxidase              107   5e-23
sp|P36968|GPX4_PIG  Phospholipid hydroperoxide glutathione p...   107   5e-23
sp|Q4AEG9|GPX4_CEBAP  Phospholipid hydroperoxide glutathione...   105   1e-22
sp|O24296|GPX1_PEA  Phospholipid hydroperoxide glutathione p...   105   1e-22
sp|Q9N2J2|GPX4_BOVIN  Phospholipid hydroperoxide glutathione...   105   2e-22
sp|Q4AEH2|GPX4_PONPY  Phospholipid hydroperoxide glutathione...   104   2e-22
sp|Q4AEH0|GPX4_MACFU  Phospholipid hydroperoxide glutathione...   103   7e-22
sp|O23970|GPX1_HELAN  Glutathione peroxidase 1                    101   3e-21
>sp|Q00277|GPX1_SCHMA Glutathione peroxidase (GPX)
          Length = 169

 Score =  116 bits (291), Expect = 6e-26
 Identities = 61/161 (37%), Positives = 95/161 (59%), Gaps = 4/161 (2%)
 Frame = +1

Query: 208 TVYKFSAYDIDGNYVNFEKYRNRVLLIVNTACK*KSTHSHYAQMQTLQAKYAHRGFRVLA 387
           ++Y+F+  DI+G  V+ EKYR  V LIVN ACK  +T  +Y Q+Q +  +   +G R+LA
Sbjct: 10  SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILA 69

Query: 388 FANSQFGREKETKYSDKDIKNFVEENVNATFEMFRNVDIVGPSAHPLFKFLER----STN 555
           F  +QFG ++   +++ +IK FV E     F+MF  + + G  A  L+KFL+     +  
Sbjct: 70  FPCNQFGGQE--PWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLT 127

Query: 556 SHIIWNFNKFLVGKNGVPYKFYDNKIEPFDLTEEIEMLLNQ 678
           ++I WNF+KFLV + G P K Y     P+D+  +I  LL +
Sbjct: 128 NNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLEK 168
>sp|P52032|GPX1_ARATH Phospholipid hydroperoxide glutathione peroxidase, chloroplast
           precursor (PHGPx)
          Length = 236

 Score =  107 bits (266), Expect = 5e-23
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
 Frame = +1

Query: 208 TVYKFSAYDIDGNYVNFEKYRNRVLLIVNTACK*KSTHSHYAQMQTLQAKYAHRGFRVLA 387
           TV+ F+  DIDG  V   K++ +V+LIVN A +   T S+Y+++  L  KY  +GF +LA
Sbjct: 78  TVHDFTVKDIDGKDVALNKFKGKVMLIVNVASRCGLTSSNYSELSHLYEKYKTQGFEILA 137

Query: 388 FANSQFGREKETKYSDKDIKNFVEENVNATFEMFRNVDIVGPSAHPLFKFLERSTNSH-- 561
           F  +QFG ++    S+ +IK F      A F +F  VD+ GPS  P+++FL+ +      
Sbjct: 138 FPCNQFGFQEPG--SNSEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYEFLKSNAGGFLG 195

Query: 562 --IIWNFNKFLVGKNGVPYKFYDNKIEPFDLTEEIEMLL 672
             I WNF KFL+ K G   + Y     PF + ++I+ LL
Sbjct: 196 GLIKWNFEKFLIDKKGKVVERYPPTTSPFQIEKDIQKLL 234
>sp|P74250|GPO_SYNY3 Putative glutathione peroxidase
          Length = 169

 Score =  107 bits (266), Expect = 5e-23
 Identities = 64/165 (38%), Positives = 90/165 (54%), Gaps = 10/165 (6%)
 Frame = +1

Query: 208 TVYKFSAYDIDGNYVNFEKYRNRVLLIVNTACK*KSTHSHYAQMQTLQAKYAHRGFRVLA 387
           T+Y FSA  +DG+ V    +  +VLLIVNTA +   T   Y  +Q L  ++  RGF VL 
Sbjct: 8   TIYGFSANALDGSPVALRDFEGKVLLIVNTASQCGFT-PQYQGLQALYNRFGDRGFTVLG 66

Query: 388 FANSQFGREKETKYSDKDIKNFVEENVNATFEMFRNVDIVGPSAHPLFKFLERSTNSHII 567
           F  +QFG+++       +IKNF E     TF +F  V++ GP+AHPLFKFL  ++    I
Sbjct: 67  FPCNQFGQQEPG--GSGEIKNFCETRYGVTFPLFEKVEVNGPNAHPLFKFLTAASPGMAI 124

Query: 568 ----------WNFNKFLVGKNGVPYKFYDNKIEPFDLTEEIEMLL 672
                     WNF KFLV + G   K Y +  +P ++  +IE LL
Sbjct: 125 PFLGGAEDIKWNFTKFLVDRQGKVVKRYGSIAKPDEIAADIEKLL 169
>sp|P36968|GPX4_PIG Phospholipid hydroperoxide glutathione peroxidase, mitochondrial
           precursor (PHGPx) (GPX-4)
          Length = 197

 Score =  107 bits (266), Expect = 5e-23
 Identities = 61/161 (37%), Positives = 90/161 (55%), Gaps = 6/161 (3%)
 Frame = +1

Query: 208 TVYKFSAYDIDGNYVNFEKYRNRVLLIVNTACK*KSTHSHYAQMQTLQAKYAHRGFRVLA 387
           ++++FSA DIDG+ VN +KYR  V ++ N A +   T  +Y Q+  L A+YA  G R+LA
Sbjct: 40  SMHEFSAKDIDGHMVNLDKYRGYVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILA 99

Query: 388 FANSQFGREKETKYSDKDIKNFVEENVNATFEMFRNVDIVGPSAHPLFKFLERSTNSH-- 561
           F  +QFGR++    SD +IK F     N  F+MF  + + G  AHPL+K+++        
Sbjct: 100 FPCNQFGRQEPG--SDAEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKVQPKGRGM 156

Query: 562 ----IIWNFNKFLVGKNGVPYKFYDNKIEPFDLTEEIEMLL 672
               I WNF KFL+ KNG   K Y    EP  + +++   L
Sbjct: 157 LGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDLPCYL 197
>sp|Q4AEG9|GPX4_CEBAP Phospholipid hydroperoxide glutathione peroxidase, mitochondrial
           precursor (PHGPx) (Glutathione peroxidase 4) (GPx-4)
          Length = 197

 Score =  105 bits (263), Expect = 1e-22
 Identities = 60/151 (39%), Positives = 87/151 (57%), Gaps = 6/151 (3%)
 Frame = +1

Query: 205 GTVYKFSAYDIDGNYVNFEKYRNRVLLIVNTACK*KSTHSHYAQMQTLQAKYAHRGFRVL 384
           G++++FSA DIDG+ VN +KYR  V ++ N A +   T  +Y Q+  L A+YA  G R+L
Sbjct: 39  GSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRIL 98

Query: 385 AFANSQFGREKETKYSDKDIKNFVEENVNATFEMFRNVDIVGPSAHPLFKFLERS----- 549
           AF  +QFG  K+   S+++IK F     N  F+MF  + + G  AHPL+K+++       
Sbjct: 99  AFPCNQFG--KQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKG 155

Query: 550 -TNSHIIWNFNKFLVGKNGVPYKFYDNKIEP 639
              + I WNF KFL+ KNG   K Y    EP
Sbjct: 156 ILGNAIKWNFTKFLIDKNGCVVKRYGPMEEP 186
>sp|O24296|GPX1_PEA Phospholipid hydroperoxide glutathione peroxidase, chloroplast
           precursor (PHGPx)
          Length = 236

 Score =  105 bits (262), Expect = 1e-22
 Identities = 58/159 (36%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
 Frame = +1

Query: 208 TVYKFSAYDIDGNYVNFEKYRNRVLLIVNTACK*KSTHSHYAQMQTLQAKYAHRGFRVLA 387
           T+Y F+  DID   V+  K++ +VLLIVN A +   T S+Y ++  L   + ++G  VLA
Sbjct: 78  TIYDFTVKDIDKKDVSLSKFKGKVLLIVNVASRCGLTSSNYTELSHLYENFKNKGLEVLA 137

Query: 388 FANSQFGREKETKYSDKDIKNFVEENVNATFEMFRNVDIVGPSAHPLFKFLERSTNSH-- 561
           F  +QFG ++    S+++IK F      A F +F  VD+ GP   P+++FL+ S+     
Sbjct: 138 FPCNQFGMQEPG--SNEEIKQFACTKFKAEFPIFDKVDVNGPFTAPVYQFLKSSSGGFFG 195

Query: 562 --IIWNFNKFLVGKNGVPYKFYDNKIEPFDLTEEIEMLL 672
             + WNF KFLV KNG   + Y     PF + ++I+ LL
Sbjct: 196 DIVKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234
>sp|Q9N2J2|GPX4_BOVIN Phospholipid hydroperoxide glutathione peroxidase, mitochondrial
           precursor (PHGPx) (Glutathione peroxidase 4) (GPx-4)
          Length = 197

 Score =  105 bits (261), Expect = 2e-22
 Identities = 59/161 (36%), Positives = 89/161 (55%), Gaps = 6/161 (3%)
 Frame = +1

Query: 208 TVYKFSAYDIDGNYVNFEKYRNRVLLIVNTACK*KSTHSHYAQMQTLQAKYAHRGFRVLA 387
           ++++FSA DIDG  VN +KYR  V ++ N A +   T  +Y Q+  L A+YA  G R+LA
Sbjct: 40  SMHEFSAKDIDGRMVNLDKYRGHVCIVTNVASQCGKTDVNYTQLVDLHARYAECGLRILA 99

Query: 388 FANSQFGREKETKYSDKDIKNFVEENVNATFEMFRNVDIVGPSAHPLFKFLERSTNSH-- 561
           F  +QFGR++    S+ +IK F     N  F++F  + + G  AHPL+K+++        
Sbjct: 100 FPCNQFGRQEPG--SNAEIKEFA-AGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGRGM 156

Query: 562 ----IIWNFNKFLVGKNGVPYKFYDNKIEPFDLTEEIEMLL 672
               I WNF KFL+ KNG   K Y    EP  + +++   L
Sbjct: 157 LGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPCYL 197
>sp|Q4AEH2|GPX4_PONPY Phospholipid hydroperoxide glutathione peroxidase, mitochondrial
           precursor (PHGPx) (Glutathione peroxidase 4) (GPx-4)
 sp|P36969|GPX4_HUMAN Phospholipid hydroperoxide glutathione peroxidase, mitochondrial
           precursor (PHGPx) (GPX-4)
          Length = 197

 Score =  104 bits (260), Expect = 2e-22
 Identities = 59/157 (37%), Positives = 90/157 (57%), Gaps = 6/157 (3%)
 Frame = +1

Query: 208 TVYKFSAYDIDGNYVNFEKYRNRVLLIVNTACK*KSTHSHYAQMQTLQAKYAHRGFRVLA 387
           ++++FSA DIDG+ VN +KYR  V ++ N A +   T  +Y Q+  L A+YA  G R+LA
Sbjct: 40  SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILA 99

Query: 388 FANSQFGREKETKYSDKDIKNFVEENVNATFEMFRNVDIVGPSAHPLFKFLERS------ 549
           F  +QFG  K+   S+++IK F     N  F+MF  + + G  AHPL+K+++        
Sbjct: 100 FPCNQFG--KQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGI 156

Query: 550 TNSHIIWNFNKFLVGKNGVPYKFYDNKIEPFDLTEEI 660
             + I WNF KFL+ KNG   K Y    EP  + +++
Sbjct: 157 LGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193
>sp|Q4AEH0|GPX4_MACFU Phospholipid hydroperoxide glutathione peroxidase, mitochondrial
           precursor (PHGPx) (Glutathione peroxidase 4) (GPx-4)
          Length = 197

 Score =  103 bits (256), Expect = 7e-22
 Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 6/157 (3%)
 Frame = +1

Query: 208 TVYKFSAYDIDGNYVNFEKYRNRVLLIVNTACK*KSTHSHYAQMQTLQAKYAHRGFRVLA 387
           ++++FSA DIDG+ VN +KYR  V ++ N A +   T  +Y Q+  L A+YA  G R+LA
Sbjct: 40  SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGVRILA 99

Query: 388 FANSQFGREKETKYSDKDIKNFVEENVNATFEMFRNVDIVGPSAHPLFKFLERS------ 549
           F  +QFG  K+   S++ IK F     N  F+MF  + + G  AHPL+K+++        
Sbjct: 100 FPCNQFG--KQEPGSNEKIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGI 156

Query: 550 TNSHIIWNFNKFLVGKNGVPYKFYDNKIEPFDLTEEI 660
             + I WNF KFL+ KNG   K Y    EP  + +++
Sbjct: 157 LGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193
>sp|O23970|GPX1_HELAN Glutathione peroxidase 1
          Length = 167

 Score =  101 bits (251), Expect = 3e-21
 Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
 Frame = +1

Query: 208 TVYKFSAYDIDGNYVNFEKYRNRVLLIVNTACK*KSTHSHYAQMQTLQAKYAHRGFRVLA 387
           T+Y F+  D  GN V+   Y+ +V+LIVN A K   T++ Y ++  +  KY  +GF +LA
Sbjct: 8   TLYDFTVKDAKGNDVDLSVYKGKVVLIVNVASKCGLTNNSYDELNQIYLKYKEKGFEILA 67

Query: 388 FANSQFGREKETKYSDKDIKNFVEENVNATFEMFRNVDIVGPSAHPLFKFLERS----TN 555
           F  +QFG+++    ++++I +FV     + F +F  +D+ G +A P+++FL+        
Sbjct: 68  FPCNQFGQQEPG--TNEEIVDFVCTKFKSEFPIFDKIDVNGENAAPVYEFLKTGFYGILG 125

Query: 556 SHIIWNFNKFLVGKNGVPYKFYDNKIEPFDLTEEIEMLL 672
             I WNF+KFLV KNG P   Y     P  +  +I+ LL
Sbjct: 126 GDIQWNFSKFLVDKNGQPVDCYYPTTSPLTVERDIQKLL 164
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,535,080
Number of Sequences: 369166
Number of extensions: 1346979
Number of successful extensions: 3764
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3640
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7066925600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)