Planaria EST Database


DrC_02026

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02026
         (319 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08070|TBA2_CHICK  Tubulin alpha-2 chain (Testis-specific)      77   9e-15
sp|P34690|TBA2_CAEEL  Tubulin alpha-2 chain                        76   2e-14
sp|Q02245|TBA5_MAIZE  Tubulin alpha-5 chain (Alpha-5 tubulin)      75   4e-14
sp|P33627|TBA6_MAIZE  Tubulin alpha-6 chain (Alpha-6 tubulin)      75   4e-14
sp|O22349|TBA3_ELEIN  Tubulin alpha-3 chain (Alpha-3 tubulin)      75   4e-14
sp|P28752|TBA1_ORYSA  Tubulin alpha-1 chain                        75   5e-14
sp|Q43473|TBA1_HORVU  Tubulin alpha-1 chain                        75   6e-14
sp|Q38771|TBA_AVESA  Tubulin alpha chain                           74   8e-14
sp|P07304|TBA1_STYLE  Tubulin alpha-1 chain                        74   8e-14
sp|P18258|TBA1_PARLI  Tubulin alpha-1 chain                        74   1e-13
>sp|P08070|TBA2_CHICK Tubulin alpha-2 chain (Testis-specific)
          Length = 446

 Score = 77.4 bits (189), Expect = 9e-15
 Identities = 37/70 (52%), Positives = 43/70 (61%)
 Frame = +1

Query: 1   ELISLHIGQAGVQMGNAIWELLCTEHGIDXXXXXXXXXXXXXXXXTFFKRTVEEKYVPRS 180
           E IS+HIGQAGVQ+GNA WEL C EH I                 TFF+ T   KYVPR+
Sbjct: 3   ECISVHIGQAGVQIGNACWELFCLEHSIQPDGTFSDPPSSDDSFATFFRETSMSKYVPRA 62

Query: 181 LFVDLEPTVI 210
           + VDLEPTV+
Sbjct: 63  IMVDLEPTVV 72
>sp|P34690|TBA2_CAEEL Tubulin alpha-2 chain
          Length = 448

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 40/76 (52%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
 Frame = +1

Query: 1   ELISLHIGQAGVQMGNAIWELLCTEHGID-XXXXXXXXXXXXXXXXTFFKRTVEEKYVPR 177
           E+IS+H+GQAGVQ+GNA WEL C EHGI                  TFF  T   +YVPR
Sbjct: 3   EVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYVPR 62

Query: 178 SLFVDLEPTVIVTI*T 225
           S+FVDLEPTV+  I T
Sbjct: 63  SIFVDLEPTVVDEIRT 78
>sp|Q02245|TBA5_MAIZE Tubulin alpha-5 chain (Alpha-5 tubulin)
          Length = 450

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
 Frame = +1

Query: 1   ELISLHIGQAGVQMGNAIWELLCTEHGID---XXXXXXXXXXXXXXXXTFFKRTVEEKYV 171
           E+IS+HIGQAG+Q+GNA WEL C EHGI+                   TFF  T   K+V
Sbjct: 3   EIISIHIGQAGIQVGNACWELYCLEHGIEHDGTMPSDSSVGVAHDAFNTFFSETGSGKHV 62

Query: 172 PRSLFVDLEPTVI 210
           PR++FVDLEPTVI
Sbjct: 63  PRAIFVDLEPTVI 75
>sp|P33627|TBA6_MAIZE Tubulin alpha-6 chain (Alpha-6 tubulin)
          Length = 450

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
 Frame = +1

Query: 1   ELISLHIGQAGVQMGNAIWELLCTEHGID---XXXXXXXXXXXXXXXXTFFKRTVEEKYV 171
           E+IS+HIGQAG+Q+GNA WEL C EHGI+                   TFF  T   K+V
Sbjct: 3   EIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHV 62

Query: 172 PRSLFVDLEPTVI 210
           PR++FVDLEPTVI
Sbjct: 63  PRAIFVDLEPTVI 75
>sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain (Alpha-3 tubulin)
          Length = 450

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
 Frame = +1

Query: 1   ELISLHIGQAGVQMGNAIWELLCTEHGID---XXXXXXXXXXXXXXXXTFFKRTVEEKYV 171
           E+IS+HIGQAG+Q+GNA WEL C EHGI+                   TFF  T   K+V
Sbjct: 3   EIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHV 62

Query: 172 PRSLFVDLEPTVI 210
           PR++FVDLEPTVI
Sbjct: 63  PRAIFVDLEPTVI 75
>sp|P28752|TBA1_ORYSA Tubulin alpha-1 chain
          Length = 450

 Score = 75.1 bits (183), Expect = 5e-14
 Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
 Frame = +1

Query: 1   ELISLHIGQAGVQMGNAIWELLCTEHGID---XXXXXXXXXXXXXXXXTFFKRTVEEKYV 171
           E+IS+HIGQAG+Q+GNA WEL C EHGI+                   TFF  T   K+V
Sbjct: 3   EIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTTVGVAHDAFNTFFSETGAGKHV 62

Query: 172 PRSLFVDLEPTVI 210
           PR++FVDLEPTVI
Sbjct: 63  PRAIFVDLEPTVI 75
>sp|Q43473|TBA1_HORVU Tubulin alpha-1 chain
          Length = 450

 Score = 74.7 bits (182), Expect = 6e-14
 Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
 Frame = +1

Query: 1   ELISLHIGQAGVQMGNAIWELLCTEHGID---XXXXXXXXXXXXXXXXTFFKRTVEEKYV 171
           E+IS+HIGQAG+Q+GNA WEL C EHGI+                   TFF  T   K+V
Sbjct: 3   EIISIHIGQAGIQVGNACWELYCLEHGINQDGTMPSDTTVGVAHDAFNTFFSETGAGKHV 62

Query: 172 PRSLFVDLEPTVI 210
           PR++FVDLEPTVI
Sbjct: 63  PRAIFVDLEPTVI 75
>sp|Q38771|TBA_AVESA Tubulin alpha chain
          Length = 447

 Score = 74.3 bits (181), Expect = 8e-14
 Identities = 38/73 (52%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
 Frame = +1

Query: 1   ELISLHIGQAGVQMGNAIWELLCTEHGID---XXXXXXXXXXXXXXXXTFFKRTVEEKYV 171
           E+IS+HIGQAG+Q+GNA WEL C EHGI                    TFF  T   K+V
Sbjct: 3   EIISIHIGQAGIQVGNACWELYCLEHGIQQDGTMPSDTTVGVAHDAFNTFFSETGAGKHV 62

Query: 172 PRSLFVDLEPTVI 210
           PR++FVDLEPTVI
Sbjct: 63  PRAIFVDLEPTVI 75
>sp|P07304|TBA1_STYLE Tubulin alpha-1 chain
          Length = 445

 Score = 74.3 bits (181), Expect = 8e-14
 Identities = 37/73 (50%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
 Frame = +1

Query: 1   ELISLHIGQAGVQMGNAIWELLCTEHGID---XXXXXXXXXXXXXXXXTFFKRTVEEKYV 171
           E+IS+H+GQAG+Q+GNA WEL C EHGI                    TFF  T  EK+V
Sbjct: 3   EVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAEKHV 62

Query: 172 PRSLFVDLEPTVI 210
           PR +F+DLEPTVI
Sbjct: 63  PRCVFLDLEPTVI 75
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
          Length = 452

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 38/73 (52%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
 Frame = +1

Query: 1   ELISLHIGQAGVQMGNAIWELLCTEHGID---XXXXXXXXXXXXXXXXTFFKRTVEEKYV 171
           E IS+H+GQAGVQMGNA WEL C EHGI                    TFF  T   K+V
Sbjct: 3   ECISIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 172 PRSLFVDLEPTVI 210
           PR++FVDLEPTV+
Sbjct: 63  PRAVFVDLEPTVV 75
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,468,463
Number of Sequences: 369166
Number of extensions: 608567
Number of successful extensions: 2059
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1749
length of database: 68,354,980
effective HSP length: 74
effective length of database: 54,684,590
effective search space used: 1695222290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)