Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02026
(319 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08070|TBA2_CHICK Tubulin alpha-2 chain (Testis-specific) 77 9e-15
sp|P34690|TBA2_CAEEL Tubulin alpha-2 chain 76 2e-14
sp|Q02245|TBA5_MAIZE Tubulin alpha-5 chain (Alpha-5 tubulin) 75 4e-14
sp|P33627|TBA6_MAIZE Tubulin alpha-6 chain (Alpha-6 tubulin) 75 4e-14
sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain (Alpha-3 tubulin) 75 4e-14
sp|P28752|TBA1_ORYSA Tubulin alpha-1 chain 75 5e-14
sp|Q43473|TBA1_HORVU Tubulin alpha-1 chain 75 6e-14
sp|Q38771|TBA_AVESA Tubulin alpha chain 74 8e-14
sp|P07304|TBA1_STYLE Tubulin alpha-1 chain 74 8e-14
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 74 1e-13
>sp|P08070|TBA2_CHICK Tubulin alpha-2 chain (Testis-specific)
Length = 446
Score = 77.4 bits (189), Expect = 9e-15
Identities = 37/70 (52%), Positives = 43/70 (61%)
Frame = +1
Query: 1 ELISLHIGQAGVQMGNAIWELLCTEHGIDXXXXXXXXXXXXXXXXTFFKRTVEEKYVPRS 180
E IS+HIGQAGVQ+GNA WEL C EH I TFF+ T KYVPR+
Sbjct: 3 ECISVHIGQAGVQIGNACWELFCLEHSIQPDGTFSDPPSSDDSFATFFRETSMSKYVPRA 62
Query: 181 LFVDLEPTVI 210
+ VDLEPTV+
Sbjct: 63 IMVDLEPTVV 72
>sp|P34690|TBA2_CAEEL Tubulin alpha-2 chain
Length = 448
Score = 76.3 bits (186), Expect = 2e-14
Identities = 40/76 (52%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +1
Query: 1 ELISLHIGQAGVQMGNAIWELLCTEHGID-XXXXXXXXXXXXXXXXTFFKRTVEEKYVPR 177
E+IS+H+GQAGVQ+GNA WEL C EHGI TFF T +YVPR
Sbjct: 3 EVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYVPR 62
Query: 178 SLFVDLEPTVIVTI*T 225
S+FVDLEPTV+ I T
Sbjct: 63 SIFVDLEPTVVDEIRT 78
>sp|Q02245|TBA5_MAIZE Tubulin alpha-5 chain (Alpha-5 tubulin)
Length = 450
Score = 75.5 bits (184), Expect = 4e-14
Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Frame = +1
Query: 1 ELISLHIGQAGVQMGNAIWELLCTEHGID---XXXXXXXXXXXXXXXXTFFKRTVEEKYV 171
E+IS+HIGQAG+Q+GNA WEL C EHGI+ TFF T K+V
Sbjct: 3 EIISIHIGQAGIQVGNACWELYCLEHGIEHDGTMPSDSSVGVAHDAFNTFFSETGSGKHV 62
Query: 172 PRSLFVDLEPTVI 210
PR++FVDLEPTVI
Sbjct: 63 PRAIFVDLEPTVI 75
>sp|P33627|TBA6_MAIZE Tubulin alpha-6 chain (Alpha-6 tubulin)
Length = 450
Score = 75.5 bits (184), Expect = 4e-14
Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Frame = +1
Query: 1 ELISLHIGQAGVQMGNAIWELLCTEHGID---XXXXXXXXXXXXXXXXTFFKRTVEEKYV 171
E+IS+HIGQAG+Q+GNA WEL C EHGI+ TFF T K+V
Sbjct: 3 EIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHV 62
Query: 172 PRSLFVDLEPTVI 210
PR++FVDLEPTVI
Sbjct: 63 PRAIFVDLEPTVI 75
>sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain (Alpha-3 tubulin)
Length = 450
Score = 75.5 bits (184), Expect = 4e-14
Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Frame = +1
Query: 1 ELISLHIGQAGVQMGNAIWELLCTEHGID---XXXXXXXXXXXXXXXXTFFKRTVEEKYV 171
E+IS+HIGQAG+Q+GNA WEL C EHGI+ TFF T K+V
Sbjct: 3 EIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHV 62
Query: 172 PRSLFVDLEPTVI 210
PR++FVDLEPTVI
Sbjct: 63 PRAIFVDLEPTVI 75
>sp|P28752|TBA1_ORYSA Tubulin alpha-1 chain
Length = 450
Score = 75.1 bits (183), Expect = 5e-14
Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Frame = +1
Query: 1 ELISLHIGQAGVQMGNAIWELLCTEHGID---XXXXXXXXXXXXXXXXTFFKRTVEEKYV 171
E+IS+HIGQAG+Q+GNA WEL C EHGI+ TFF T K+V
Sbjct: 3 EIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTTVGVAHDAFNTFFSETGAGKHV 62
Query: 172 PRSLFVDLEPTVI 210
PR++FVDLEPTVI
Sbjct: 63 PRAIFVDLEPTVI 75
>sp|Q43473|TBA1_HORVU Tubulin alpha-1 chain
Length = 450
Score = 74.7 bits (182), Expect = 6e-14
Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Frame = +1
Query: 1 ELISLHIGQAGVQMGNAIWELLCTEHGID---XXXXXXXXXXXXXXXXTFFKRTVEEKYV 171
E+IS+HIGQAG+Q+GNA WEL C EHGI+ TFF T K+V
Sbjct: 3 EIISIHIGQAGIQVGNACWELYCLEHGINQDGTMPSDTTVGVAHDAFNTFFSETGAGKHV 62
Query: 172 PRSLFVDLEPTVI 210
PR++FVDLEPTVI
Sbjct: 63 PRAIFVDLEPTVI 75
>sp|Q38771|TBA_AVESA Tubulin alpha chain
Length = 447
Score = 74.3 bits (181), Expect = 8e-14
Identities = 38/73 (52%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Frame = +1
Query: 1 ELISLHIGQAGVQMGNAIWELLCTEHGID---XXXXXXXXXXXXXXXXTFFKRTVEEKYV 171
E+IS+HIGQAG+Q+GNA WEL C EHGI TFF T K+V
Sbjct: 3 EIISIHIGQAGIQVGNACWELYCLEHGIQQDGTMPSDTTVGVAHDAFNTFFSETGAGKHV 62
Query: 172 PRSLFVDLEPTVI 210
PR++FVDLEPTVI
Sbjct: 63 PRAIFVDLEPTVI 75
>sp|P07304|TBA1_STYLE Tubulin alpha-1 chain
Length = 445
Score = 74.3 bits (181), Expect = 8e-14
Identities = 37/73 (50%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Frame = +1
Query: 1 ELISLHIGQAGVQMGNAIWELLCTEHGID---XXXXXXXXXXXXXXXXTFFKRTVEEKYV 171
E+IS+H+GQAG+Q+GNA WEL C EHGI TFF T EK+V
Sbjct: 3 EVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAEKHV 62
Query: 172 PRSLFVDLEPTVI 210
PR +F+DLEPTVI
Sbjct: 63 PRCVFLDLEPTVI 75
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 73.9 bits (180), Expect = 1e-13
Identities = 38/73 (52%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +1
Query: 1 ELISLHIGQAGVQMGNAIWELLCTEHGID---XXXXXXXXXXXXXXXXTFFKRTVEEKYV 171
E IS+H+GQAGVQMGNA WEL C EHGI TFF T K+V
Sbjct: 3 ECISIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62
Query: 172 PRSLFVDLEPTVI 210
PR++FVDLEPTV+
Sbjct: 63 PRAVFVDLEPTVV 75
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,468,463
Number of Sequences: 369166
Number of extensions: 608567
Number of successful extensions: 2059
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1749
length of database: 68,354,980
effective HSP length: 74
effective length of database: 54,684,590
effective search space used: 1695222290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)