Planaria EST Database


DrC_02024

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02024
         (834 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43900|LMO6_HUMAN  LIM domain only protein 6 (Triple LIM ...   149   9e-36
sp|Q80VL3|LMO6_MOUSE  LIM domain only protein 6 (Triple LIM ...   147   3e-35
sp|Q9UGI8|TES_HUMAN  Testin (TESS)                                144   3e-34
sp|P47226|TES_MOUSE  Testin (TES1/TES2)                           120   4e-27
sp|Q8VEE1|LMC1_MOUSE  LIM and cysteine-rich domains protein 1     120   4e-27
sp|Q9NZU5|LMCD1_HUMAN  LIM and cysteine-rich domains protein...   115   1e-25
sp|Q80Y24|PRIC2_MOUSE  Prickle-like protein 2                     115   1e-25
sp|Q96MT3|PRIC1_HUMAN  Prickle-like protein 1 (REST/NRSF-int...   104   3e-22
sp|Q04650|LMX1A_MESAU  LIM homeobox transcription factor 1 a...    64   5e-10
sp|Q9JKU8|LMX1A_MOUSE  LIM homeobox transcription factor 1 a...    64   5e-10
>sp|O43900|LMO6_HUMAN LIM domain only protein 6 (Triple LIM domain protein 6)
          Length = 615

 Score =  149 bits (376), Expect = 9e-36
 Identities = 92/278 (33%), Positives = 136/278 (48%), Gaps = 15/278 (5%)
 Frame = +1

Query: 40  DIGLSCNNC-SNCTGFKIHGWRKTCDKCKCAVEKHDIYDESTLPILDEMKVDKPISTVYK 216
           D G  CN+C   C GF +HGWRK C  CKC  E+H ++    +P+  E  + + IS   +
Sbjct: 22  DRGQPCNSCREQCPGFLLHGWRKICQHCKCpreEHAVH---AVPVDLERIMCRLISDFQR 78

Query: 217 EALAL----ASKVNKSWLPIGLKNKSEI-------EDFIMHKSYPNVLKRKKSLRLQIPV 363
            +++      +    +W+P GLK +          ED + + + P    R K L  Q+P 
Sbjct: 79  HSISDDDSGCASEEYAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPP 138

Query: 364 QDRCVEKFNHLGTVAERAEAEKFLLNRNNRDLGVGSVRISEENTS---CAECHGNIKPNC 534
            D   +    L    E+ E   F   R   +LG G VRI     +   C EC   I    
Sbjct: 139 HDSEAQYCTALEE-EEKKELRAFSQQRKRENLGRGIVRIFPVTITGAICEECGKQIGGGD 197

Query: 535 FCITNEEGSVVKQFWHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRCGECDE 714
             +      +    WH +CF C+TC+E+LVD IY  +  K++C RH+A+ +RPRC  CDE
Sbjct: 198 IAVFASRAGL-GACWHPQCFVCTTCQELLVDLIYFYHVGKVYCGRHHAECLRPRCQACDE 256

Query: 715 LIFSTEYIRAGENEFHMNHFACYLCDTSLSKQLYLQHK 828
           +IFS E   A    +HM+HF C+ C+ SL  Q Y+  +
Sbjct: 257 IIFSPECTEAEGRHWHMDHFCCFECEASLGGQRYVMRQ 294
>sp|Q80VL3|LMO6_MOUSE LIM domain only protein 6 (Triple LIM domain protein 6)
          Length = 624

 Score =  147 bits (372), Expect = 3e-35
 Identities = 91/276 (32%), Positives = 134/276 (48%), Gaps = 15/276 (5%)
 Frame = +1

Query: 46  GLSCNNC-SNCTGFKIHGWRKTCDKCKCAVEKHDIYDESTLPILDEMKVDKPISTVYKEA 222
           G  CN+C   C GF +HGWRK C  CKC  E+H +    T+P+  E  + + IS   + +
Sbjct: 24  GQPCNSCREQCPGFLLHGWRKICQHCKCpreEHAV---RTVPVDLERIMCRLISDFQRHS 80

Query: 223 LAL----ASKVNKSWLPIGLKNKSEI-------EDFIMHKSYPNVLKRKKSLRLQIPVQD 369
           ++      +    +W+P GLK +          ED + + + P    R K L  Q+P  D
Sbjct: 81  ISDDDSGCASEEYAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHD 140

Query: 370 RCVEKFNHLGTVAERAEAEKFLLNRNNRDLGVGSVRISEENTS---CAECHGNIKPNCFC 540
              +    L    E+ E   F   R   +LG  +VRI     +   C EC   I      
Sbjct: 141 SEAQYCTALEE-EEKKELRAFSQQRKRENLGRATVRIFPVTITGAICEECGKQIGGGDIA 199

Query: 541 ITNEEGSVVKQFWHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRCGECDELI 720
           +      +    WH +CF C+TC+E+LVD IY  +  K++C RH+A+ +RPRC  CDE+I
Sbjct: 200 VFASRAGL-GACWHPQCFVCTTCQELLVDLIYFYHAGKVYCGRHHAECLRPRCQACDEII 258

Query: 721 FSTEYIRAGENEFHMNHFACYLCDTSLSKQLYLQHK 828
           FS E   A    +HM HF C+ C+ SL  Q Y+  +
Sbjct: 259 FSPECTEAEGRHWHMGHFCCFECEASLGGQRYVMRQ 294
>sp|Q9UGI8|TES_HUMAN Testin (TESS)
          Length = 421

 Score =  144 bits (363), Expect = 3e-34
 Identities = 96/336 (28%), Positives = 152/336 (45%), Gaps = 68/336 (20%)
 Frame = +1

Query: 16   IYKMAL--KQDIGLSCNNCSN-CTGFKIHGWRKTCDKCKCAVEKHDIY-----DESTLPI 171
            + KM L  +Q  G  C  C   C GF++H WRK C  CKC  E+HD+      D     +
Sbjct: 7    VKKMGLGHEQGFGAPCLKCKEKCEGFELHFWRKICRNCKCGQEEHDVLLSNEEDRKVGKL 66

Query: 172  LDEMKVDKPISTVYKEALAL------------ASKVNKSWLPIGLKNKSEIEDFIMHKSY 315
             ++ K    I+ +  + + +            A+K N S   +  +    +++  + + Y
Sbjct: 67   FEDTKYTTLIAKLKSDGIPMYKRNVMILTNPVAAKKNVSINTVTYEWAPPVQNQALARQY 126

Query: 316  PNVLK--------------RKKSLRLQIPVQDRCVEKFNHLGTVAERAEAEKFLLNRNNR 453
              +L               RKK L  Q+P  D+   K + L +  E  E E+F+    + 
Sbjct: 127  MQMLPKEKQPVAGSEGAQYRKKQLAKQLPAHDQDPSKCHEL-SpreVKEMEQFVKKYKSE 185

Query: 454  DLGVGSVRI----------------SEENTSCA--------ECHGNIKPNCFC--ITNEE 555
             LGVG V++                 + +T  A          H   + +C+C  ++ +E
Sbjct: 186  ALGVGDVKLPCEMDAQGPKQMNIPGGDRSTPAAVGAMEDKSAEHKRTQYSCYCCKLSMKE 245

Query: 556  GSVV--------KQFWHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRCGECD 711
            G            + WH  CF CSTC E+LVD IY   N+K++C RHY  + +PRC  CD
Sbjct: 246  GDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWKNEKLYCGRHYCDSEKPRCAGCD 305

Query: 712  ELIFSTEYIRAGENEFHMNHFACYLCDTSLSKQLYL 819
            ELIFS EY +A    +H+ HF C+ CD+ L+ ++Y+
Sbjct: 306  ELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYV 341

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 41/132 (31%), Positives = 47/132 (35%), Gaps = 4/132 (3%)
 Frame = +1

Query: 448 NRDLGVGSVRISEENTSCAECHGNIKPNCFCITNEEGSVVKQFWHLECFQCSTCREILVD 627
           N  L  G      E   CA C   I       +NE      Q WHL+ F C  C  IL  
Sbjct: 284 NEKLYCGRHYCDSEKPRCAGCDELI------FSNEYTQAENQNWHLKHFCCFDCDSILAG 337

Query: 628 NIYAMYNQKIFCIRHYAKNIRPRCGECDELIFSTEYIRAGENEFHMNH----FACYLCDT 795
            IY M N K  C   Y KN    C  C   I   E  R   N F  +     F C  C  
Sbjct: 338 EIYVMVNDKPVCKPCYVKNHAVVCQGCHNAI-DPEVQRVTYNNFSWHASTECFLCSCCSK 396

Query: 796 SLSKQLYLQHKG 831
            L  Q ++  +G
Sbjct: 397 CLIGQKFMPVEG 408

 Score = 33.5 bits (75), Expect = 0.74
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +1

Query: 499 CAECHGNIKPNCFCITNEEGSVVKQFWHL--ECFQCSTCREILVDNIYAMYNQKIFC 663
           C  CH  I P    +T    S     WH   ECF CS C + L+   +      +FC
Sbjct: 361 CQGCHNAIDPEVQRVTYNNFS-----WHASTECFLCSCCSKCLIGQKFMPVEGMVFC 412
>sp|P47226|TES_MOUSE Testin (TES1/TES2)
          Length = 423

 Score =  120 bits (302), Expect = 4e-27
 Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 62/309 (20%)
 Frame = +1

Query: 79  GFKIHGWRKTCDKCKCAVEKHDIY-----DESTLPILDEMKVDKPISTVYKEALAL---- 231
           GF++H WRK C  C    +   +      D     + ++ K    I+ +  + + +    
Sbjct: 36  GFELHFWRKICRNCNVVKKSMTVLLSNEEDRKVGRLFEDTKYTTLIAKLKSDGIPMYKRN 95

Query: 232 --------ASKVNKSWLPIGLKNKSEIEDFIMHKSYPNVLK--------------RKKSL 345
                   A+K N S   +  +    +++  + + Y  +L               RKK L
Sbjct: 96  VMILTNPVAAKKNVSINTVTYEWAPPVQNQALARQYMQMLPKEKQPVAGSEGAQYRKKQL 155

Query: 346 RLQIPVQDRCVEKFNHLGTVAERAEAEKFLLNRNNRDLGVGSVRISEENT-------SCA 504
             Q+P  D+   K + L +  E  E E+F+    +  LGVG V+   E         +C 
Sbjct: 156 AKQLPAHDQDPSKCHEL-SPKEVKEMEQFVKKYKSEALGVGDVKFPSEMNAQGDKVHNCG 214

Query: 505 ECHG--------------NIKPNCFC---ITNE-------EGSVVKQFWHLECFQCSTCR 612
             H                 + +C+C    TNE       E +   + WH  CF CSTC 
Sbjct: 215 NRHAPAAVASKDKSAESKKTQYSCYCCKHTTNEGEPAIYAERAGYDKLWHPACFICSTCG 274

Query: 613 EILVDNIYAMYNQKIFCIRHYAKNIRPRCGECDELIFSTEYIRAGENEFHMNHFACYLCD 792
           E+LVD IY   N K++C RHY  + +PRC  CDELIFS EY +A    +H+ HF C+ CD
Sbjct: 275 ELLVDMIYFWKNGKLYCGRHYCDSEKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCD 334

Query: 793 TSLSKQLYL 819
             L+ ++Y+
Sbjct: 335 HILAGKIYV 343

 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 40/132 (30%), Positives = 46/132 (34%), Gaps = 4/132 (3%)
 Frame = +1

Query: 448 NRDLGVGSVRISEENTSCAECHGNIKPNCFCITNEEGSVVKQFWHLECFQCSTCREILVD 627
           N  L  G      E   CA C   I       +NE      Q WHL+ F C  C  IL  
Sbjct: 286 NGKLYCGRHYCDSEKPRCAGCDELI------FSNEYTQAENQNWHLKHFCCFDCDHILAG 339

Query: 628 NIYAMYNQKIFCIRHYAKNIRPRCGECDELIFSTEYIRAGENEFHMNH----FACYLCDT 795
            IY M   K  C   Y KN    C  C   I   E  R   N F  +     F C  C  
Sbjct: 340 KIYVMVTDKPVCKPCYVKNHAVVCQGCHNAI-DPEVQRVTYNNFSWHASTECFLCSCCSK 398

Query: 796 SLSKQLYLQHKG 831
            L  Q ++  +G
Sbjct: 399 CLIGQKFMPVEG 410

 Score = 33.5 bits (75), Expect = 0.74
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +1

Query: 499 CAECHGNIKPNCFCITNEEGSVVKQFWHL--ECFQCSTCREILVDNIYAMYNQKIFC 663
           C  CH  I P    +T    S     WH   ECF CS C + L+   +      +FC
Sbjct: 363 CQGCHNAIDPEVQRVTYNNFS-----WHASTECFLCSCCSKCLIGQKFMPVEGMVFC 414
>sp|Q8VEE1|LMC1_MOUSE LIM and cysteine-rich domains protein 1
          Length = 365

 Score =  120 bits (302), Expect = 4e-27
 Identities = 95/344 (27%), Positives = 145/344 (42%), Gaps = 72/344 (20%)
 Frame = +1

Query: 16   IYKMALKQDI---GLSCNNCSN-CTGFKIHGWRKTCDKCKCAVEKH----DIYDESTLPI 171
            + KM+L Q     G++C  C   C+GF+ H WRK C  CKC+ E+H    D+ D+  +  
Sbjct: 12   VQKMSLGQQQSARGVACLRCKGMCSGFEPHSWRKICKSCKCSQEEHCLSSDLDDDRKIGR 71

Query: 172  L----------------DEMKVDKPISTVYKEALALASK-----VNKSWLPIGLKNKSEI 288
            L                D +++ K    +    +A         +   W P G+  K  +
Sbjct: 72   LLMDSKYATLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGL 131

Query: 289  E--DFIMHKSYP-----NVLKRKKSLRLQIPVQDRCVEKFNHLGTVAERAEA-EKFLLNR 444
            +  + I  +  P       L R++ L  Q+P+ D+   +    G V    +A E+F+ + 
Sbjct: 132  QYMELIPKERQPVTGTEGALYRRRQLMHQLPIYDQDPSRCR--GLVENELKAMEEFVKHY 189

Query: 445  NNRDLGVGSVRI-------SEENTS----------------------------CAECHGN 519
             +  LGVG V +        EEN +                            C  C G 
Sbjct: 190  KSEALGVGEVALPGQGGLPKEENKTQEKPEGTETTAPTTNGSLGDPSKEVEYVCELCKGA 249

Query: 520  IKPNCFCITNEEGSVVKQFWHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRC 699
               +   +  +     KQ WH  CFQC  C E LVD IY   +   +C RHY +++RPRC
Sbjct: 250  APVDSPVVYADRAGYSKQ-WHPTCFQCIKCSEPLVDLIYFWKDGAPWCGRHYCESVRPRC 308

Query: 700  GECDELIFSTEYIRAGENEFHMNHFACYLCDTSLSKQLYLQHKG 831
              CDE+IFS +Y R  +  +H  HF C  C+  LS + Y+  KG
Sbjct: 309  SGCDEIIFSEDYQRVEDLAWHRKHFICEGCEQLLSGRAYIVTKG 352
>sp|Q9NZU5|LMCD1_HUMAN LIM and cysteine-rich domains protein 1 (Dyxin)
          Length = 365

 Score =  115 bits (288), Expect = 1e-25
 Identities = 86/330 (26%), Positives = 133/330 (40%), Gaps = 68/330 (20%)
 Frame = +1

Query: 46   GLSCNNCSN-CTGFKIHGWRKTCDKCKCAVEKH----DIYDESTLPIL------------ 174
            G++C  C   C+GF+ H WRK C  CKC+ E H    D+ D+  +  L            
Sbjct: 25   GVACLGCKGTCSGFEPHSWRKICKSCKCSQEDHCLTSDLEDDRKIGRLLMDSKYSTLTAR 84

Query: 175  ----DEMKVDKPISTVYKEALALASK-----VNKSWLPIGLKNKSEIE--DFIMHKSYP- 318
                D +++ K    +    +A         +   W P G+  K  ++  + I  +  P 
Sbjct: 85   VKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPV 144

Query: 319  ----NVLKRKKSLRLQIPVQDRCVEKFNHLGTVAERAEAEKFLLNRNNRDLGVGSVRI-- 480
                    R++ L  Q+P+ D+   +   L    E    E+F+    +  LGVG V +  
Sbjct: 145  TGTEGAFYRRRQLMHQLPIYDQDPSRCRGL-LENELKLMEEFVKQYKSEALGVGEVALPG 203

Query: 481  ---------------------------------SEENTSCAECHGNIKPNCFCITNEEGS 561
                                              E    C  C G   P+   + ++   
Sbjct: 204  QGGLPKEEGKQQEKPEGAETTAATTNGSLSDPSKEVEYVCELCKGAAPPDSPVVYSDRAG 263

Query: 562  VVKQFWHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRCGECDELIFSTEYIR 741
              KQ WH  CF C+ C E LVD IY   +   +C RHY +++RPRC  CDE+IF+ +Y R
Sbjct: 264  YNKQ-WHPTCFVCAKCSEPLVDLIYFWKDGAPWCGRHYCESLRPRCSGCDEIIFAEDYQR 322

Query: 742  AGENEFHMNHFACYLCDTSLSKQLYLQHKG 831
              +  +H  HF C  C+  LS + Y+  KG
Sbjct: 323  VEDLAWHRKHFVCEGCEQLLSGRAYIVTKG 352
>sp|Q80Y24|PRIC2_MOUSE Prickle-like protein 2
          Length = 845

 Score =  115 bits (288), Expect = 1e-25
 Identities = 69/205 (33%), Positives = 104/205 (50%), Gaps = 11/205 (5%)
 Frame = +1

Query: 250 SWLPIGLKNKSEIEDF--IMHKSYPNVLKRKKSLRL-----QIPVQDRCVEKFNHLGTVA 408
           +W+P GLK +   + +  +  +  P V    + LR+     Q+P  D  V   N L    
Sbjct: 38  AWVPPGLKPEQVHQYYSCLPEEKVPYVNSAGEKLRIKQLLHQLPPHDNEVRYCNSLDE-E 96

Query: 409 ERAEAEKFLLNRNNRDLGVGSVR---ISEENTSCAECHGNIKPNCFCI-TNEEGSVVKQF 576
           E+ E + F   R   +LG G+VR   ++     C +C G IK     +  +  G  +   
Sbjct: 97  EKRELKLFSNQRKRENLGRGNVRPFPVTMTGAICEQCGGQIKGGDIAVFASRAGHGI--C 154

Query: 577 WHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRCGECDELIFSTEYIRAGENE 756
           WH  CF C+ C E+LVD IY   + KI+C RH+A+ ++PRC  CDE+IF+ E   A    
Sbjct: 155 WHPPCFVCTVCNELLVDLIYFYQDGKIYCGRHHAECLKPRCAACDEIIFADECTEAEGRH 214

Query: 757 FHMNHFACYLCDTSLSKQLYLQHKG 831
           +HM HF C+ C+T L  Q Y+  +G
Sbjct: 215 WHMRHFCCFECETVLGGQRYIMKEG 239
>sp|Q96MT3|PRIC1_HUMAN Prickle-like protein 1 (REST/NRSF-interacting LIM domain protein 1)
          Length = 831

 Score =  104 bits (260), Expect = 3e-22
 Identities = 67/210 (31%), Positives = 93/210 (44%), Gaps = 16/210 (7%)
 Frame = +1

Query: 250 SWLPIGLKNKSEI-------EDFIMHKSYPNVLKRKKSLRLQIPVQDRCVEKFNHLGTVA 408
           +W+P GL+ +          E+ + + + P    R K L  Q+P  D  V     L    
Sbjct: 34  AWVPPGLRPEQIQLYFACLPEEKVPYVNSPGEKHRIKQLLYQLPPHDNEVRYCQSLSE-E 92

Query: 409 ERAEAEKFLLNRNNRDLGVGSVRISEENTSCAECHGNIKPNCFCITNEEGSVVKQF---- 576
           E+ E + F   R    LG G++++       A C         C     G  V  F    
Sbjct: 93  EKKELQVFSAQRKKEALGRGTIKLLSRAVMHAVCEQ-------CGLKINGGEVAVFASRA 145

Query: 577 -----WHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRCGECDELIFSTEYIR 741
                WH  CF C TC E+LVD IY   + KI C RH+A+ ++PRC  CDE+IF+ E   
Sbjct: 146 GPGVCWHPSCFVCFTCNELLVDLIYFYQDGKIHCGRHHAELLKPRCSACDEIIFADECTE 205

Query: 742 AGENEFHMNHFACYLCDTSLSKQLYLQHKG 831
           A    +HM HF C  C+T L  Q Y+   G
Sbjct: 206 AEGRHWHMKHFCCLECETVLGGQRYIMKDG 235

 Score = 33.1 bits (74), Expect = 0.97
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 10/121 (8%)
 Frame = +1

Query: 499 CAECHGNI-KPNC-----FCITNEEGSVVKQFWHLECFQCSTCREILVDNIYAMYNQKIF 660
           C   H  + KP C         +E      + WH++ F C  C  +L    Y M + + F
Sbjct: 179 CGRHHAELLKPRCSACDEIIFADECTEAEGRHWHMKHFCCLECETVLGGQRYIMKDGRPF 238

Query: 661 CIRHYAKNIRPRCGECDELIFSTEYIRAGENEFHMNH----FACYLCDTSLSKQLYLQHK 828
           C   +       C  C E I   ++ +   +  H +     F+C  C  SL    +L  +
Sbjct: 239 CCGCFESLYAEYCETCGEHI-GVDHAQMTYDGQHWHATEACFSCAQCKASLLGCPFLPKQ 297

Query: 829 G 831
           G
Sbjct: 298 G 298
>sp|Q04650|LMX1A_MESAU LIM homeobox transcription factor 1 alpha (LIM/homeobox protein
           LMX1A) (LMX-1) (LIM-homeobox protein 1)
          Length = 382

 Score = 63.9 bits (154), Expect = 5e-10
 Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = +1

Query: 574 FWHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRCGECDELIFSTEYI-RAGE 750
           FWH +C QC++C+E L    +   ++K++C  HY K    +CG C E I   E++ RA +
Sbjct: 54  FWHEQCVQCASCKEPLETTCFYR-DKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQK 112

Query: 751 NEFHMNHFACYLCDTSLSK 807
           + +H++ F C +C+  L K
Sbjct: 113 SVYHLSCFCCCVCERQLQK 131

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 499 CAECHGNIKPNCFCITNEEGSVVKQFWHLECFQCSTC-REILVDNIYAMYNQKIFCIRHY 675
           C  C   I PN F +  +     K  +HL CF C  C R++   + + +   ++ C   Y
Sbjct: 94  CGGCFEAIAPNEFVMRAQ-----KSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDY 148

Query: 676 AK 681
            K
Sbjct: 149 EK 150
>sp|Q9JKU8|LMX1A_MOUSE LIM homeobox transcription factor 1 alpha (LIM/homeobox protein
           LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1)
          Length = 382

 Score = 63.9 bits (154), Expect = 5e-10
 Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = +1

Query: 574 FWHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRCGECDELIFSTEYI-RAGE 750
           FWH +C QC++C+E L    +   ++K++C  HY K    +CG C E I   E++ RA +
Sbjct: 54  FWHEQCVQCASCKEPLETTCFYR-DKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQK 112

Query: 751 NEFHMNHFACYLCDTSLSK 807
           + +H++ F C +C+  L K
Sbjct: 113 SVYHLSCFCCCVCERQLQK 131

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 499 CAECHGNIKPNCFCITNEEGSVVKQFWHLECFQCSTC-REILVDNIYAMYNQKIFCIRHY 675
           C  C   I PN F +  +     K  +HL CF C  C R++   + + +   ++ C   Y
Sbjct: 94  CGGCFEAIAPNEFVMRAQ-----KSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDY 148

Query: 676 AK 681
            K
Sbjct: 149 EK 150
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,293,080
Number of Sequences: 369166
Number of extensions: 1796912
Number of successful extensions: 5712
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5565
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)