Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02024
(834 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O43900|LMO6_HUMAN LIM domain only protein 6 (Triple LIM ... 149 9e-36
sp|Q80VL3|LMO6_MOUSE LIM domain only protein 6 (Triple LIM ... 147 3e-35
sp|Q9UGI8|TES_HUMAN Testin (TESS) 144 3e-34
sp|P47226|TES_MOUSE Testin (TES1/TES2) 120 4e-27
sp|Q8VEE1|LMC1_MOUSE LIM and cysteine-rich domains protein 1 120 4e-27
sp|Q9NZU5|LMCD1_HUMAN LIM and cysteine-rich domains protein... 115 1e-25
sp|Q80Y24|PRIC2_MOUSE Prickle-like protein 2 115 1e-25
sp|Q96MT3|PRIC1_HUMAN Prickle-like protein 1 (REST/NRSF-int... 104 3e-22
sp|Q04650|LMX1A_MESAU LIM homeobox transcription factor 1 a... 64 5e-10
sp|Q9JKU8|LMX1A_MOUSE LIM homeobox transcription factor 1 a... 64 5e-10
>sp|O43900|LMO6_HUMAN LIM domain only protein 6 (Triple LIM domain protein 6)
Length = 615
Score = 149 bits (376), Expect = 9e-36
Identities = 92/278 (33%), Positives = 136/278 (48%), Gaps = 15/278 (5%)
Frame = +1
Query: 40 DIGLSCNNC-SNCTGFKIHGWRKTCDKCKCAVEKHDIYDESTLPILDEMKVDKPISTVYK 216
D G CN+C C GF +HGWRK C CKC E+H ++ +P+ E + + IS +
Sbjct: 22 DRGQPCNSCREQCPGFLLHGWRKICQHCKCpreEHAVH---AVPVDLERIMCRLISDFQR 78
Query: 217 EALAL----ASKVNKSWLPIGLKNKSEI-------EDFIMHKSYPNVLKRKKSLRLQIPV 363
+++ + +W+P GLK + ED + + + P R K L Q+P
Sbjct: 79 HSISDDDSGCASEEYAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPP 138
Query: 364 QDRCVEKFNHLGTVAERAEAEKFLLNRNNRDLGVGSVRISEENTS---CAECHGNIKPNC 534
D + L E+ E F R +LG G VRI + C EC I
Sbjct: 139 HDSEAQYCTALEE-EEKKELRAFSQQRKRENLGRGIVRIFPVTITGAICEECGKQIGGGD 197
Query: 535 FCITNEEGSVVKQFWHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRCGECDE 714
+ + WH +CF C+TC+E+LVD IY + K++C RH+A+ +RPRC CDE
Sbjct: 198 IAVFASRAGL-GACWHPQCFVCTTCQELLVDLIYFYHVGKVYCGRHHAECLRPRCQACDE 256
Query: 715 LIFSTEYIRAGENEFHMNHFACYLCDTSLSKQLYLQHK 828
+IFS E A +HM+HF C+ C+ SL Q Y+ +
Sbjct: 257 IIFSPECTEAEGRHWHMDHFCCFECEASLGGQRYVMRQ 294
>sp|Q80VL3|LMO6_MOUSE LIM domain only protein 6 (Triple LIM domain protein 6)
Length = 624
Score = 147 bits (372), Expect = 3e-35
Identities = 91/276 (32%), Positives = 134/276 (48%), Gaps = 15/276 (5%)
Frame = +1
Query: 46 GLSCNNC-SNCTGFKIHGWRKTCDKCKCAVEKHDIYDESTLPILDEMKVDKPISTVYKEA 222
G CN+C C GF +HGWRK C CKC E+H + T+P+ E + + IS + +
Sbjct: 24 GQPCNSCREQCPGFLLHGWRKICQHCKCpreEHAV---RTVPVDLERIMCRLISDFQRHS 80
Query: 223 LAL----ASKVNKSWLPIGLKNKSEI-------EDFIMHKSYPNVLKRKKSLRLQIPVQD 369
++ + +W+P GLK + ED + + + P R K L Q+P D
Sbjct: 81 ISDDDSGCASEEYAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHD 140
Query: 370 RCVEKFNHLGTVAERAEAEKFLLNRNNRDLGVGSVRISEENTS---CAECHGNIKPNCFC 540
+ L E+ E F R +LG +VRI + C EC I
Sbjct: 141 SEAQYCTALEE-EEKKELRAFSQQRKRENLGRATVRIFPVTITGAICEECGKQIGGGDIA 199
Query: 541 ITNEEGSVVKQFWHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRCGECDELI 720
+ + WH +CF C+TC+E+LVD IY + K++C RH+A+ +RPRC CDE+I
Sbjct: 200 VFASRAGL-GACWHPQCFVCTTCQELLVDLIYFYHAGKVYCGRHHAECLRPRCQACDEII 258
Query: 721 FSTEYIRAGENEFHMNHFACYLCDTSLSKQLYLQHK 828
FS E A +HM HF C+ C+ SL Q Y+ +
Sbjct: 259 FSPECTEAEGRHWHMGHFCCFECEASLGGQRYVMRQ 294
>sp|Q9UGI8|TES_HUMAN Testin (TESS)
Length = 421
Score = 144 bits (363), Expect = 3e-34
Identities = 96/336 (28%), Positives = 152/336 (45%), Gaps = 68/336 (20%)
Frame = +1
Query: 16 IYKMAL--KQDIGLSCNNCSN-CTGFKIHGWRKTCDKCKCAVEKHDIY-----DESTLPI 171
+ KM L +Q G C C C GF++H WRK C CKC E+HD+ D +
Sbjct: 7 VKKMGLGHEQGFGAPCLKCKEKCEGFELHFWRKICRNCKCGQEEHDVLLSNEEDRKVGKL 66
Query: 172 LDEMKVDKPISTVYKEALAL------------ASKVNKSWLPIGLKNKSEIEDFIMHKSY 315
++ K I+ + + + + A+K N S + + +++ + + Y
Sbjct: 67 FEDTKYTTLIAKLKSDGIPMYKRNVMILTNPVAAKKNVSINTVTYEWAPPVQNQALARQY 126
Query: 316 PNVLK--------------RKKSLRLQIPVQDRCVEKFNHLGTVAERAEAEKFLLNRNNR 453
+L RKK L Q+P D+ K + L + E E E+F+ +
Sbjct: 127 MQMLPKEKQPVAGSEGAQYRKKQLAKQLPAHDQDPSKCHEL-SpreVKEMEQFVKKYKSE 185
Query: 454 DLGVGSVRI----------------SEENTSCA--------ECHGNIKPNCFC--ITNEE 555
LGVG V++ + +T A H + +C+C ++ +E
Sbjct: 186 ALGVGDVKLPCEMDAQGPKQMNIPGGDRSTPAAVGAMEDKSAEHKRTQYSCYCCKLSMKE 245
Query: 556 GSVV--------KQFWHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRCGECD 711
G + WH CF CSTC E+LVD IY N+K++C RHY + +PRC CD
Sbjct: 246 GDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWKNEKLYCGRHYCDSEKPRCAGCD 305
Query: 712 ELIFSTEYIRAGENEFHMNHFACYLCDTSLSKQLYL 819
ELIFS EY +A +H+ HF C+ CD+ L+ ++Y+
Sbjct: 306 ELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYV 341
Score = 50.8 bits (120), Expect = 4e-06
Identities = 41/132 (31%), Positives = 47/132 (35%), Gaps = 4/132 (3%)
Frame = +1
Query: 448 NRDLGVGSVRISEENTSCAECHGNIKPNCFCITNEEGSVVKQFWHLECFQCSTCREILVD 627
N L G E CA C I +NE Q WHL+ F C C IL
Sbjct: 284 NEKLYCGRHYCDSEKPRCAGCDELI------FSNEYTQAENQNWHLKHFCCFDCDSILAG 337
Query: 628 NIYAMYNQKIFCIRHYAKNIRPRCGECDELIFSTEYIRAGENEFHMNH----FACYLCDT 795
IY M N K C Y KN C C I E R N F + F C C
Sbjct: 338 EIYVMVNDKPVCKPCYVKNHAVVCQGCHNAI-DPEVQRVTYNNFSWHASTECFLCSCCSK 396
Query: 796 SLSKQLYLQHKG 831
L Q ++ +G
Sbjct: 397 CLIGQKFMPVEG 408
Score = 33.5 bits (75), Expect = 0.74
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = +1
Query: 499 CAECHGNIKPNCFCITNEEGSVVKQFWHL--ECFQCSTCREILVDNIYAMYNQKIFC 663
C CH I P +T S WH ECF CS C + L+ + +FC
Sbjct: 361 CQGCHNAIDPEVQRVTYNNFS-----WHASTECFLCSCCSKCLIGQKFMPVEGMVFC 412
>sp|P47226|TES_MOUSE Testin (TES1/TES2)
Length = 423
Score = 120 bits (302), Expect = 4e-27
Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 62/309 (20%)
Frame = +1
Query: 79 GFKIHGWRKTCDKCKCAVEKHDIY-----DESTLPILDEMKVDKPISTVYKEALAL---- 231
GF++H WRK C C + + D + ++ K I+ + + + +
Sbjct: 36 GFELHFWRKICRNCNVVKKSMTVLLSNEEDRKVGRLFEDTKYTTLIAKLKSDGIPMYKRN 95
Query: 232 --------ASKVNKSWLPIGLKNKSEIEDFIMHKSYPNVLK--------------RKKSL 345
A+K N S + + +++ + + Y +L RKK L
Sbjct: 96 VMILTNPVAAKKNVSINTVTYEWAPPVQNQALARQYMQMLPKEKQPVAGSEGAQYRKKQL 155
Query: 346 RLQIPVQDRCVEKFNHLGTVAERAEAEKFLLNRNNRDLGVGSVRISEENT-------SCA 504
Q+P D+ K + L + E E E+F+ + LGVG V+ E +C
Sbjct: 156 AKQLPAHDQDPSKCHEL-SPKEVKEMEQFVKKYKSEALGVGDVKFPSEMNAQGDKVHNCG 214
Query: 505 ECHG--------------NIKPNCFC---ITNE-------EGSVVKQFWHLECFQCSTCR 612
H + +C+C TNE E + + WH CF CSTC
Sbjct: 215 NRHAPAAVASKDKSAESKKTQYSCYCCKHTTNEGEPAIYAERAGYDKLWHPACFICSTCG 274
Query: 613 EILVDNIYAMYNQKIFCIRHYAKNIRPRCGECDELIFSTEYIRAGENEFHMNHFACYLCD 792
E+LVD IY N K++C RHY + +PRC CDELIFS EY +A +H+ HF C+ CD
Sbjct: 275 ELLVDMIYFWKNGKLYCGRHYCDSEKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCD 334
Query: 793 TSLSKQLYL 819
L+ ++Y+
Sbjct: 335 HILAGKIYV 343
Score = 47.8 bits (112), Expect = 4e-05
Identities = 40/132 (30%), Positives = 46/132 (34%), Gaps = 4/132 (3%)
Frame = +1
Query: 448 NRDLGVGSVRISEENTSCAECHGNIKPNCFCITNEEGSVVKQFWHLECFQCSTCREILVD 627
N L G E CA C I +NE Q WHL+ F C C IL
Sbjct: 286 NGKLYCGRHYCDSEKPRCAGCDELI------FSNEYTQAENQNWHLKHFCCFDCDHILAG 339
Query: 628 NIYAMYNQKIFCIRHYAKNIRPRCGECDELIFSTEYIRAGENEFHMNH----FACYLCDT 795
IY M K C Y KN C C I E R N F + F C C
Sbjct: 340 KIYVMVTDKPVCKPCYVKNHAVVCQGCHNAI-DPEVQRVTYNNFSWHASTECFLCSCCSK 398
Query: 796 SLSKQLYLQHKG 831
L Q ++ +G
Sbjct: 399 CLIGQKFMPVEG 410
Score = 33.5 bits (75), Expect = 0.74
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = +1
Query: 499 CAECHGNIKPNCFCITNEEGSVVKQFWHL--ECFQCSTCREILVDNIYAMYNQKIFC 663
C CH I P +T S WH ECF CS C + L+ + +FC
Sbjct: 363 CQGCHNAIDPEVQRVTYNNFS-----WHASTECFLCSCCSKCLIGQKFMPVEGMVFC 414
>sp|Q8VEE1|LMC1_MOUSE LIM and cysteine-rich domains protein 1
Length = 365
Score = 120 bits (302), Expect = 4e-27
Identities = 95/344 (27%), Positives = 145/344 (42%), Gaps = 72/344 (20%)
Frame = +1
Query: 16 IYKMALKQDI---GLSCNNCSN-CTGFKIHGWRKTCDKCKCAVEKH----DIYDESTLPI 171
+ KM+L Q G++C C C+GF+ H WRK C CKC+ E+H D+ D+ +
Sbjct: 12 VQKMSLGQQQSARGVACLRCKGMCSGFEPHSWRKICKSCKCSQEEHCLSSDLDDDRKIGR 71
Query: 172 L----------------DEMKVDKPISTVYKEALALASK-----VNKSWLPIGLKNKSEI 288
L D +++ K + +A + W P G+ K +
Sbjct: 72 LLMDSKYATLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGL 131
Query: 289 E--DFIMHKSYP-----NVLKRKKSLRLQIPVQDRCVEKFNHLGTVAERAEA-EKFLLNR 444
+ + I + P L R++ L Q+P+ D+ + G V +A E+F+ +
Sbjct: 132 QYMELIPKERQPVTGTEGALYRRRQLMHQLPIYDQDPSRCR--GLVENELKAMEEFVKHY 189
Query: 445 NNRDLGVGSVRI-------SEENTS----------------------------CAECHGN 519
+ LGVG V + EEN + C C G
Sbjct: 190 KSEALGVGEVALPGQGGLPKEENKTQEKPEGTETTAPTTNGSLGDPSKEVEYVCELCKGA 249
Query: 520 IKPNCFCITNEEGSVVKQFWHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRC 699
+ + + KQ WH CFQC C E LVD IY + +C RHY +++RPRC
Sbjct: 250 APVDSPVVYADRAGYSKQ-WHPTCFQCIKCSEPLVDLIYFWKDGAPWCGRHYCESVRPRC 308
Query: 700 GECDELIFSTEYIRAGENEFHMNHFACYLCDTSLSKQLYLQHKG 831
CDE+IFS +Y R + +H HF C C+ LS + Y+ KG
Sbjct: 309 SGCDEIIFSEDYQRVEDLAWHRKHFICEGCEQLLSGRAYIVTKG 352
>sp|Q9NZU5|LMCD1_HUMAN LIM and cysteine-rich domains protein 1 (Dyxin)
Length = 365
Score = 115 bits (288), Expect = 1e-25
Identities = 86/330 (26%), Positives = 133/330 (40%), Gaps = 68/330 (20%)
Frame = +1
Query: 46 GLSCNNCSN-CTGFKIHGWRKTCDKCKCAVEKH----DIYDESTLPIL------------ 174
G++C C C+GF+ H WRK C CKC+ E H D+ D+ + L
Sbjct: 25 GVACLGCKGTCSGFEPHSWRKICKSCKCSQEDHCLTSDLEDDRKIGRLLMDSKYSTLTAR 84
Query: 175 ----DEMKVDKPISTVYKEALALASK-----VNKSWLPIGLKNKSEIE--DFIMHKSYP- 318
D +++ K + +A + W P G+ K ++ + I + P
Sbjct: 85 VKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPV 144
Query: 319 ----NVLKRKKSLRLQIPVQDRCVEKFNHLGTVAERAEAEKFLLNRNNRDLGVGSVRI-- 480
R++ L Q+P+ D+ + L E E+F+ + LGVG V +
Sbjct: 145 TGTEGAFYRRRQLMHQLPIYDQDPSRCRGL-LENELKLMEEFVKQYKSEALGVGEVALPG 203
Query: 481 ---------------------------------SEENTSCAECHGNIKPNCFCITNEEGS 561
E C C G P+ + ++
Sbjct: 204 QGGLPKEEGKQQEKPEGAETTAATTNGSLSDPSKEVEYVCELCKGAAPPDSPVVYSDRAG 263
Query: 562 VVKQFWHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRCGECDELIFSTEYIR 741
KQ WH CF C+ C E LVD IY + +C RHY +++RPRC CDE+IF+ +Y R
Sbjct: 264 YNKQ-WHPTCFVCAKCSEPLVDLIYFWKDGAPWCGRHYCESLRPRCSGCDEIIFAEDYQR 322
Query: 742 AGENEFHMNHFACYLCDTSLSKQLYLQHKG 831
+ +H HF C C+ LS + Y+ KG
Sbjct: 323 VEDLAWHRKHFVCEGCEQLLSGRAYIVTKG 352
>sp|Q80Y24|PRIC2_MOUSE Prickle-like protein 2
Length = 845
Score = 115 bits (288), Expect = 1e-25
Identities = 69/205 (33%), Positives = 104/205 (50%), Gaps = 11/205 (5%)
Frame = +1
Query: 250 SWLPIGLKNKSEIEDF--IMHKSYPNVLKRKKSLRL-----QIPVQDRCVEKFNHLGTVA 408
+W+P GLK + + + + + P V + LR+ Q+P D V N L
Sbjct: 38 AWVPPGLKPEQVHQYYSCLPEEKVPYVNSAGEKLRIKQLLHQLPPHDNEVRYCNSLDE-E 96
Query: 409 ERAEAEKFLLNRNNRDLGVGSVR---ISEENTSCAECHGNIKPNCFCI-TNEEGSVVKQF 576
E+ E + F R +LG G+VR ++ C +C G IK + + G +
Sbjct: 97 EKRELKLFSNQRKRENLGRGNVRPFPVTMTGAICEQCGGQIKGGDIAVFASRAGHGI--C 154
Query: 577 WHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRCGECDELIFSTEYIRAGENE 756
WH CF C+ C E+LVD IY + KI+C RH+A+ ++PRC CDE+IF+ E A
Sbjct: 155 WHPPCFVCTVCNELLVDLIYFYQDGKIYCGRHHAECLKPRCAACDEIIFADECTEAEGRH 214
Query: 757 FHMNHFACYLCDTSLSKQLYLQHKG 831
+HM HF C+ C+T L Q Y+ +G
Sbjct: 215 WHMRHFCCFECETVLGGQRYIMKEG 239
>sp|Q96MT3|PRIC1_HUMAN Prickle-like protein 1 (REST/NRSF-interacting LIM domain protein 1)
Length = 831
Score = 104 bits (260), Expect = 3e-22
Identities = 67/210 (31%), Positives = 93/210 (44%), Gaps = 16/210 (7%)
Frame = +1
Query: 250 SWLPIGLKNKSEI-------EDFIMHKSYPNVLKRKKSLRLQIPVQDRCVEKFNHLGTVA 408
+W+P GL+ + E+ + + + P R K L Q+P D V L
Sbjct: 34 AWVPPGLRPEQIQLYFACLPEEKVPYVNSPGEKHRIKQLLYQLPPHDNEVRYCQSLSE-E 92
Query: 409 ERAEAEKFLLNRNNRDLGVGSVRISEENTSCAECHGNIKPNCFCITNEEGSVVKQF---- 576
E+ E + F R LG G++++ A C C G V F
Sbjct: 93 EKKELQVFSAQRKKEALGRGTIKLLSRAVMHAVCEQ-------CGLKINGGEVAVFASRA 145
Query: 577 -----WHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRCGECDELIFSTEYIR 741
WH CF C TC E+LVD IY + KI C RH+A+ ++PRC CDE+IF+ E
Sbjct: 146 GPGVCWHPSCFVCFTCNELLVDLIYFYQDGKIHCGRHHAELLKPRCSACDEIIFADECTE 205
Query: 742 AGENEFHMNHFACYLCDTSLSKQLYLQHKG 831
A +HM HF C C+T L Q Y+ G
Sbjct: 206 AEGRHWHMKHFCCLECETVLGGQRYIMKDG 235
Score = 33.1 bits (74), Expect = 0.97
Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 10/121 (8%)
Frame = +1
Query: 499 CAECHGNI-KPNC-----FCITNEEGSVVKQFWHLECFQCSTCREILVDNIYAMYNQKIF 660
C H + KP C +E + WH++ F C C +L Y M + + F
Sbjct: 179 CGRHHAELLKPRCSACDEIIFADECTEAEGRHWHMKHFCCLECETVLGGQRYIMKDGRPF 238
Query: 661 CIRHYAKNIRPRCGECDELIFSTEYIRAGENEFHMNH----FACYLCDTSLSKQLYLQHK 828
C + C C E I ++ + + H + F+C C SL +L +
Sbjct: 239 CCGCFESLYAEYCETCGEHI-GVDHAQMTYDGQHWHATEACFSCAQCKASLLGCPFLPKQ 297
Query: 829 G 831
G
Sbjct: 298 G 298
>sp|Q04650|LMX1A_MESAU LIM homeobox transcription factor 1 alpha (LIM/homeobox protein
LMX1A) (LMX-1) (LIM-homeobox protein 1)
Length = 382
Score = 63.9 bits (154), Expect = 5e-10
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +1
Query: 574 FWHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRCGECDELIFSTEYI-RAGE 750
FWH +C QC++C+E L + ++K++C HY K +CG C E I E++ RA +
Sbjct: 54 FWHEQCVQCASCKEPLETTCFYR-DKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQK 112
Query: 751 NEFHMNHFACYLCDTSLSK 807
+ +H++ F C +C+ L K
Sbjct: 113 SVYHLSCFCCCVCERQLQK 131
Score = 30.4 bits (67), Expect = 6.3
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 499 CAECHGNIKPNCFCITNEEGSVVKQFWHLECFQCSTC-REILVDNIYAMYNQKIFCIRHY 675
C C I PN F + + K +HL CF C C R++ + + + ++ C Y
Sbjct: 94 CGGCFEAIAPNEFVMRAQ-----KSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDY 148
Query: 676 AK 681
K
Sbjct: 149 EK 150
>sp|Q9JKU8|LMX1A_MOUSE LIM homeobox transcription factor 1 alpha (LIM/homeobox protein
LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1)
Length = 382
Score = 63.9 bits (154), Expect = 5e-10
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +1
Query: 574 FWHLECFQCSTCREILVDNIYAMYNQKIFCIRHYAKNIRPRCGECDELIFSTEYI-RAGE 750
FWH +C QC++C+E L + ++K++C HY K +CG C E I E++ RA +
Sbjct: 54 FWHEQCVQCASCKEPLETTCFYR-DKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQK 112
Query: 751 NEFHMNHFACYLCDTSLSK 807
+ +H++ F C +C+ L K
Sbjct: 113 SVYHLSCFCCCVCERQLQK 131
Score = 30.4 bits (67), Expect = 6.3
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 499 CAECHGNIKPNCFCITNEEGSVVKQFWHLECFQCSTC-REILVDNIYAMYNQKIFCIRHY 675
C C I PN F + + K +HL CF C C R++ + + + ++ C Y
Sbjct: 94 CGGCFEAIAPNEFVMRAQ-----KSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDY 148
Query: 676 AK 681
K
Sbjct: 149 EK 150
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,293,080
Number of Sequences: 369166
Number of extensions: 1796912
Number of successful extensions: 5712
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5565
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)