Planaria EST Database


DrC_02018

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02018
         (821 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08510|KCNAS_DROME  Potassium voltage-gated channel prote...    62   1e-09
sp|P63142|KCNA2_RAT  Potassium voltage-gated channel subfami...    62   2e-09
sp|P16389|KCNA2_HUMAN  Potassium voltage-gated channel subfa...    62   2e-09
sp|Q28293|KCNA2_CANFA  Potassium voltage-gated channel subfa...    62   2e-09
sp|P22739|KCNA2_XENLA  Potassium voltage-gated channel subfa...    62   2e-09
sp|Q14721|KCB1_HUMAN  Potassium voltage-gated channel subfam...    61   3e-09
sp|O18868|KCNB1_PIG  Potassium voltage-gated channel subfami...    61   3e-09
sp|Q9MZ19|KCNB1_RABIT  Potassium voltage-gated channel subfa...    61   3e-09
sp|P15387|KCNB1_RAT  Potassium voltage-gated channel subfami...    61   3e-09
sp|Q03717|KCNB1_MOUSE  Potassium voltage-gated channel subfa...    61   3e-09
>sp|P08510|KCNAS_DROME Potassium voltage-gated channel protein Shaker
          Length = 656

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 27/55 (49%), Positives = 34/55 (61%)
 Frame = +2

Query: 656 SEFKSIFDGMWWAASTMASVGYGDYVPRSTYGCIVGYFCILTGIIITQLPVPIFL 820
           S FKSI D  WWA  TM +VGYGD  P   +G IVG  C + G++   LPVP+ +
Sbjct: 424 SFFKSIPDAFWWAVVTMTTVGYGDMTPVGVWGKIVGSLCAIAGVLTIALPVPVIV 478

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 19/61 (31%), Positives = 35/61 (57%)
 Frame = +3

Query: 459 ILKVPRFFRIFRLSKHLRFGMDAFILTLRGSTAEMLLVLIISIVAICFFGVAIYVVELSN 638
           ++++ R FRIF+LS+H + G+     TL+ S  E+ L++    + +  F  A+Y  E  +
Sbjct: 363 VIRLVRVFRIFKLSRHSK-GLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGS 421

Query: 639 E 641
           E
Sbjct: 422 E 422
>sp|P63142|KCNA2_RAT Potassium voltage-gated channel subfamily A member 2 (Voltage-gated
           potassium channel subunit Kv1.2) (RBK2) (RCK5) (RAK)
 sp|P63141|KCNA2_MOUSE Potassium voltage-gated channel subfamily A member 2 (Voltage-gated
           potassium channel subunit Kv1.2) (MK2)
          Length = 499

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 27/57 (47%), Positives = 36/57 (63%)
 Frame = +2

Query: 650 RFSEFKSIFDGMWWAASTMASVGYGDYVPRSTYGCIVGYFCILTGIIITQLPVPIFL 820
           R S+F SI D  WWA  +M +VGYGD VP +  G IVG  C + G++   LPVP+ +
Sbjct: 354 RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIV 410

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 53/220 (24%), Positives = 87/220 (39%), Gaps = 12/220 (5%)
 Frame = +3

Query: 6   PPKEFGKQSYYNRAQTACNLIALSETSGLFSRWYTLIYGMGLVISIVNLIFSTTRLGR-- 179
           P  EF +Q +         L    E+SG  +R   ++  M ++ISIV+    T  + R  
Sbjct: 141 PENEFQRQVWL--------LFEYPESSGP-ARIIAIVSVMVILISIVSFCLETLPIFRDE 191

Query: 180 -VDKITKKISKYYTGESIISYFKRTVPTPXXXXXXXXXXXXXXXXXXXXXXXXPEKILFW 356
             D     ++ +    S I Y + T  T                         P K  F+
Sbjct: 192 NEDMHGGGVTFHTYSNSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFF 251

Query: 357 VDFLNWTDILVIT------SSVLSYLPMIKDIGEYEIYPIILKVPRF---FRIFRLSKHL 509
            + +N  DI+ I        + L+  P     G+  +   IL+V R    FRIF+LS+H 
Sbjct: 252 TNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHS 311

Query: 510 RFGMDAFILTLRGSTAEMLLVLIISIVAICFFGVAIYVVE 629
           + G+     TL+ S  E+ L++    + +  F  A+Y  E
Sbjct: 312 K-GLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE 350
>sp|P16389|KCNA2_HUMAN Potassium voltage-gated channel subfamily A member 2 (Voltage-gated
           potassium channel subunit Kv1.2) (HBK5) (NGK1) (HUKIV)
          Length = 499

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 27/57 (47%), Positives = 36/57 (63%)
 Frame = +2

Query: 650 RFSEFKSIFDGMWWAASTMASVGYGDYVPRSTYGCIVGYFCILTGIIITQLPVPIFL 820
           R S+F SI D  WWA  +M +VGYGD VP +  G IVG  C + G++   LPVP+ +
Sbjct: 354 RESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIV 410

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 12/227 (5%)
 Frame = +3

Query: 6   PPKEFGKQSYYNRAQTACNLIALSETSGLFSRWYTLIYGMGLVISIVNLIFSTTRLGR-- 179
           P  EF +Q +         L    E+SG  +R   ++  M ++ISIV+    T  + R  
Sbjct: 141 PENEFQRQVWL--------LFEYPESSGP-ARIIAIVSVMVILISIVSFCLETLPIFRDE 191

Query: 180 -VDKITKKISKYYTGESIISYFKRTVPTPXXXXXXXXXXXXXXXXXXXXXXXXPEKILFW 356
             D     ++ +    S I Y + T  T                         P K  F+
Sbjct: 192 NEDMHGSGVTFHTYSNSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFF 251

Query: 357 VDFLNWTDILVIT------SSVLSYLPMIKDIGEYEIYPIILKVPRF---FRIFRLSKHL 509
            + +N  DI+ I        + L+  P     G+  +   IL+V R    FRIF+LS+H 
Sbjct: 252 TNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHS 311

Query: 510 RFGMDAFILTLRGSTAEMLLVLIISIVAICFFGVAIYVVELSNEMPQ 650
           + G+     TL+ S  E+ L++    + +  F  A+Y  E      Q
Sbjct: 312 K-GLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQ 357
>sp|Q28293|KCNA2_CANFA Potassium voltage-gated channel subfamily A member 2 (Voltage-gated
           potassium channel subunit Kv1.2) (CSMK1)
          Length = 499

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 27/57 (47%), Positives = 36/57 (63%)
 Frame = +2

Query: 650 RFSEFKSIFDGMWWAASTMASVGYGDYVPRSTYGCIVGYFCILTGIIITQLPVPIFL 820
           R S+F SI D  WWA  +M +VGYGD VP +  G IVG  C + G++   LPVP+ +
Sbjct: 354 RESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIV 410

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 12/227 (5%)
 Frame = +3

Query: 6   PPKEFGKQSYYNRAQTACNLIALSETSGLFSRWYTLIYGMGLVISIVNLIFSTTRLGR-- 179
           P  EF +Q +         L    E+SG  +R   ++  M ++ISIV+    T  + R  
Sbjct: 141 PENEFQRQVWL--------LFEYPESSGP-ARIIAIVSVMVILISIVSFCLETLPIFRDE 191

Query: 180 -VDKITKKISKYYTGESIISYFKRTVPTPXXXXXXXXXXXXXXXXXXXXXXXXPEKILFW 356
             D     ++ +    S I Y + T  T                         P K  F+
Sbjct: 192 NEDMHGGGVTFHTYSNSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFF 251

Query: 357 VDFLNWTDILVIT------SSVLSYLPMIKDIGEYEIYPIILKVPRF---FRIFRLSKHL 509
            + +N  DI+ I        + L+  P     G+  +   IL+V R    FRIF+LS+H 
Sbjct: 252 TNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHS 311

Query: 510 RFGMDAFILTLRGSTAEMLLVLIISIVAICFFGVAIYVVELSNEMPQ 650
           + G+     TL+ S  E+ L++    + +  F  A+Y  E      Q
Sbjct: 312 K-GLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQ 357
>sp|P22739|KCNA2_XENLA Potassium voltage-gated channel subfamily A member 2 (Voltage-gated
           potassium channel subunit Kv1.2) (xSHA2)
          Length = 499

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 27/57 (47%), Positives = 36/57 (63%)
 Frame = +2

Query: 650 RFSEFKSIFDGMWWAASTMASVGYGDYVPRSTYGCIVGYFCILTGIIITQLPVPIFL 820
           R S+F SI D  WWA  +M +VGYGD VP +  G IVG  C + G++   LPVP+ +
Sbjct: 354 RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIV 410

 Score = 38.1 bits (87), Expect = 0.029
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
 Frame = +3

Query: 336 PEKILFWVDFLNWTDILVITSSVLSYLPMIKDI------GEYEIYPIILKVPRF---FRI 488
           P K +F+ + +N  DI+ I    ++    + +       G+  +   IL+V R    FRI
Sbjct: 245 PSKAVFFTNLMNIIDIVAIIPYFITLGTELAEKTEDGQQGQQAMSLAILRVIRLVRVFRI 304

Query: 489 FRLSKHLRFGMDAFILTLRGSTAEMLLVLIISIVAICFFGVAIYVVE 629
           F+LS+H + G+     TL  S  E+ L++    + +  F  A++  E
Sbjct: 305 FKLSRHSK-GLQILGQTLNASMRELGLLIFFLFIGVILFSSAVFFAE 350
>sp|Q14721|KCB1_HUMAN Potassium voltage-gated channel subfamily B member 1 (Voltage-gated
           potassium channel subunit Kv2.1) (h-DRK1)
          Length = 858

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 25/55 (45%), Positives = 36/55 (65%)
 Frame = +2

Query: 656 SEFKSIFDGMWWAASTMASVGYGDYVPRSTYGCIVGYFCILTGIIITQLPVPIFL 820
           ++FKSI    WWA  TM +VGYGD  P++  G IVG  C + G+++  LP+PI +
Sbjct: 359 TKFKSIPASFWWATITMTTVGYGDIYPKTLLGKIVGGLCCIAGVLVIALPIPIIV 413
>sp|O18868|KCNB1_PIG Potassium voltage-gated channel subfamily B member 1 (Voltage-gated
           potassium channel subunit Kv2.1) (DRK1)
          Length = 858

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 25/55 (45%), Positives = 36/55 (65%)
 Frame = +2

Query: 656 SEFKSIFDGMWWAASTMASVGYGDYVPRSTYGCIVGYFCILTGIIITQLPVPIFL 820
           ++FKSI    WWA  TM +VGYGD  P++  G IVG  C + G+++  LP+PI +
Sbjct: 359 TKFKSIPASFWWATITMTTVGYGDIYPKTLLGKIVGGLCCIAGVLVIALPIPIIV 413
>sp|Q9MZ19|KCNB1_RABIT Potassium voltage-gated channel subfamily B member 1 (Voltage-gated
           potassium channel subunit Kv2.1)
          Length = 858

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 25/55 (45%), Positives = 36/55 (65%)
 Frame = +2

Query: 656 SEFKSIFDGMWWAASTMASVGYGDYVPRSTYGCIVGYFCILTGIIITQLPVPIFL 820
           ++FKSI    WWA  TM +VGYGD  P++  G IVG  C + G+++  LP+PI +
Sbjct: 359 TKFKSIPASFWWATITMTTVGYGDIYPKTLLGKIVGGLCCIAGVLVIALPIPIIV 413
>sp|P15387|KCNB1_RAT Potassium voltage-gated channel subfamily B member 1 (Voltage-gated
           potassium channel subunit Kv2.1) (DRK1)
          Length = 857

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 25/55 (45%), Positives = 36/55 (65%)
 Frame = +2

Query: 656 SEFKSIFDGMWWAASTMASVGYGDYVPRSTYGCIVGYFCILTGIIITQLPVPIFL 820
           ++FKSI    WWA  TM +VGYGD  P++  G IVG  C + G+++  LP+PI +
Sbjct: 359 TKFKSIPASFWWATITMTTVGYGDIYPKTLLGKIVGGLCCIAGVLVIALPIPIIV 413
>sp|Q03717|KCNB1_MOUSE Potassium voltage-gated channel subfamily B member 1 (Voltage-gated
           potassium channel subunit Kv2.1) (mShab)
          Length = 857

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 25/55 (45%), Positives = 36/55 (65%)
 Frame = +2

Query: 656 SEFKSIFDGMWWAASTMASVGYGDYVPRSTYGCIVGYFCILTGIIITQLPVPIFL 820
           ++FKSI    WWA  TM +VGYGD  P++  G IVG  C + G+++  LP+PI +
Sbjct: 359 TKFKSIPASFWWATITMTTVGYGDIYPKTLLGKIVGGLCCIAGVLVIALPIPIIV 413
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,743,766
Number of Sequences: 369166
Number of extensions: 1744066
Number of successful extensions: 4230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4224
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)