Planaria EST Database


DrC_02012

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02012
         (865 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P53620|COPG_BOVIN  Coatomer gamma subunit (Gamma-coat pro...   194   3e-49
sp|Q9Y678|COPG_HUMAN  Coatomer gamma subunit (Gamma-coat pro...   193   5e-49
sp|Q9UBF2|COPG2_HUMAN  Coatomer gamma-2 subunit (Gamma-2 coa...   192   8e-49
sp|Q9QXK3|COPG2_MOUSE  Coatomer gamma-2 subunit (Gamma-2 coa...   191   2e-48
sp|Q22498|COPG_CAEEL  Probable coatomer gamma subunit (Gamma...   175   1e-43
sp|P87140|COPG_SCHPO  Probable coatomer gamma subunit (Gamma...   133   7e-31
sp|P32074|COPG_YEAST  Coatomer gamma subunit (Gamma-coat pro...   119   1e-26
sp|P52488|UBA2_YEAST  Ubiquitin-activating enzyme E1-like (P...    31   3.9  
sp|O74851|ADG3_SCHPO  Protein adg3 precursor                       30   6.7  
sp|Q9K9W1|PYRD_BACHD  Dihydroorotate dehydrogenase (Dihydroo...    30   6.7  
>sp|P53620|COPG_BOVIN Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
          Length = 874

 Score =  194 bits (492), Expect = 3e-49
 Identities = 100/203 (49%), Positives = 130/203 (64%)
 Frame = +1

Query: 4   LASKYPKKHQSLLTFLSTLLRDNDGYKFXXXXXXXXXXXXXXXXXXXXAGLLHLCEFIED 183
           L  KYP+KH  L+ FL ++LR+  G+++                     GL HLCEFIED
Sbjct: 386 LCQKYPRKHAVLMNFLFSMLREEGGFEYKRAIVDCIISIIEENAESKETGLSHLCEFIED 445

Query: 184 CEHTKLTQRILYLIGQEGPHLKNPRKYIRYIYNRIMLEDGPVRCTATTALARFGAQNPEL 363
           CE T L  RIL+L+GQEGP   NP KYIR+IYNR++LE   VR  A +ALA+FGAQN E+
Sbjct: 446 CEFTVLATRILHLLGQEGPRTSNPSKYIRFIYNRVVLEHAEVRAGAVSALAKFGAQNEEM 505

Query: 364 LPSVLVLLNRITLDEDDEVRDRSTVLRYLLEQKSKEFNNNYLLSEMSVSSSALERQLNQY 543
           LPS+LVLL R  +D+D+EVRDR+T    +LEQK K  N  Y+L+ ++VS   LER L QY
Sbjct: 506 LPSILVLLKRCVMDDDNEVRDRATFYLNVLEQKQKALNAGYILNGLAVSIPGLERALQQY 565

Query: 544 YKCPNLTLQPFDLKEVPVVPAAI 612
              P  + +PFDLK VP+  A +
Sbjct: 566 TLEP--SEKPFDLKSVPLATAPL 586
>sp|Q9Y678|COPG_HUMAN Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
          Length = 874

 Score =  193 bits (491), Expect = 5e-49
 Identities = 101/201 (50%), Positives = 129/201 (64%)
 Frame = +1

Query: 4   LASKYPKKHQSLLTFLSTLLRDNDGYKFXXXXXXXXXXXXXXXXXXXXAGLLHLCEFIED 183
           L  KYP+KH  L+ FL T+LR+  G+++                     GL HLCEFIED
Sbjct: 386 LCQKYPRKHAVLMNFLFTMLREEGGFEYKRAIVDCIISIIEENSESKETGLSHLCEFIED 445

Query: 184 CEHTKLTQRILYLIGQEGPHLKNPRKYIRYIYNRIMLEDGPVRCTATTALARFGAQNPEL 363
           CE T L  RIL+L+GQEGP   NP KYIR+IYNR++LE   VR  A +ALA+FGAQN E+
Sbjct: 446 CEFTVLATRILHLLGQEGPKTTNPSKYIRFIYNRVVLEHEEVRAGAVSALAKFGAQNEEM 505

Query: 364 LPSVLVLLNRITLDEDDEVRDRSTVLRYLLEQKSKEFNNNYLLSEMSVSSSALERQLNQY 543
           LPS+LVLL R  +D+D+EVRDR+T    +LEQK K  N  Y+L+ ++VS   LER L QY
Sbjct: 506 LPSILVLLKRCVMDDDNEVRDRATFYLNVLEQKQKALNAGYILNGLTVSIPGLERALQQY 565

Query: 544 YKCPNLTLQPFDLKEVPVVPA 606
              P  + +PFDLK VP+  A
Sbjct: 566 TLEP--SEKPFDLKSVPLATA 584
>sp|Q9UBF2|COPG2_HUMAN Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)
          Length = 871

 Score =  192 bits (489), Expect = 8e-49
 Identities = 108/287 (37%), Positives = 156/287 (54%)
 Frame = +1

Query: 4    LASKYPKKHQSLLTFLSTLLRDNDGYKFXXXXXXXXXXXXXXXXXXXXAGLLHLCEFIED 183
            L  KYP+KH  ++TFLS +LRD+ G+++                    AGL HLCEFIED
Sbjct: 386  LCQKYPRKHSVMMTFLSNMLRDDGGFEYKRAIVDCIISIVEENPESKEAGLAHLCEFIED 445

Query: 184  CEHTKLTQRILYLIGQEGPHLKNPRKYIRYIYNRIMLEDGPVRCTATTALARFGAQNPEL 363
            CEHT L  +IL+L+G+EGP    P KYIR+I+NR++LE+  VR  A +ALA+FGAQN  L
Sbjct: 446  CEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNESL 505

Query: 364  LPSVLVLLNRITLDEDDEVRDRSTVLRYLLEQKSKEFNNNYLLSEMSVSSSALERQLNQY 543
            LPS+LVLL R  +D DDEVRDR+T    +L+Q+    N  Y+ + ++VS   +E+ L+QY
Sbjct: 506  LPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSVPGMEKALHQY 565

Query: 544  YKCPNLTLQPFDLKEVPVVPAAIEAEIKRNDVDFGLVDLPPSSVSQLNSDMDTVLDRMNF 723
               P  + +PFD+K +P+  A +  +      +  LV   P  ++    D+         
Sbjct: 566  TLEP--SEKPFDMKSIPLAMAPVFEQ----KAEITLVATKPEKLAPSRQDI--------- 610

Query: 724  VNVSARLQERYISELSQIXXXXXXXXXXXXXXVVELTEPDLEYFVTC 864
                      +  +L+ I               V+LTE + EYFV C
Sbjct: 611  ----------FQEQLAAIPEFLNIGPLFKSSEPVQLTEAETEYFVRC 647
>sp|Q9QXK3|COPG2_MOUSE Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)
          Length = 871

 Score =  191 bits (485), Expect = 2e-48
 Identities = 108/287 (37%), Positives = 156/287 (54%)
 Frame = +1

Query: 4    LASKYPKKHQSLLTFLSTLLRDNDGYKFXXXXXXXXXXXXXXXXXXXXAGLLHLCEFIED 183
            L  KYP+KH  ++TFLS +LRD+ G+++                    AGL HLCEFIED
Sbjct: 386  LCHKYPRKHSVMMTFLSNMLRDDGGFEYKKAIVDCIISIVEENPESKEAGLAHLCEFIED 445

Query: 184  CEHTKLTQRILYLIGQEGPHLKNPRKYIRYIYNRIMLEDGPVRCTATTALARFGAQNPEL 363
            CEHT L  +IL+L+G+EGP    P KYIR+I+NR++LE+  VR  A +ALA+FGAQN  L
Sbjct: 446  CEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNESL 505

Query: 364  LPSVLVLLNRITLDEDDEVRDRSTVLRYLLEQKSKEFNNNYLLSEMSVSSSALERQLNQY 543
            LPS+LVLL R  +D DDEVRDR+T    +L+Q+    N  Y+ + ++VS   +E+ L+QY
Sbjct: 506  LPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSIPGMEKALHQY 565

Query: 544  YKCPNLTLQPFDLKEVPVVPAAIEAEIKRNDVDFGLVDLPPSSVSQLNSDMDTVLDRMNF 723
               P+   +PFD+K +P+  A +  +      +  LV   P  ++    D+         
Sbjct: 566  TLEPSE--KPFDMKSIPLAMAPVFEQKS----EITLVTPKPEKLAPSRQDI--------- 610

Query: 724  VNVSARLQERYISELSQIXXXXXXXXXXXXXXVVELTEPDLEYFVTC 864
                      +  +L+ I               V+LTE + EYFV C
Sbjct: 611  ----------FQEQLAAIPEFMNLGPLFKSSEPVQLTEAETEYFVRC 647
>sp|Q22498|COPG_CAEEL Probable coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
          Length = 870

 Score =  175 bits (444), Expect = 1e-43
 Identities = 91/210 (43%), Positives = 126/210 (60%)
 Frame = +1

Query: 1    NLASKYPKKHQSLLTFLSTLLRDNDGYKFXXXXXXXXXXXXXXXXXXXXAGLLHLCEFIE 180
            +L S+YP+KH  ++ FL+ +LR +  Y +                    AGL HLCEFIE
Sbjct: 380  SLCSRYPRKHTVMMPFLAKMLRSDGSYDYKKAIVETIIAIIEENPDAKVAGLAHLCEFIE 439

Query: 181  DCEHTKLTQRILYLIGQEGPHLKNPRKYIRYIYNRIMLEDGPVRCTATTALARFGAQNPE 360
            DCEH  L+ R+L+L+G+E P   NP  YIR+IYNR++LE   VR  A TALA+FGAQ  +
Sbjct: 440  DCEHDNLSTRVLHLLGREAPKTPNPSSYIRFIYNRVILESTKVRAAAVTALAKFGAQCVD 499

Query: 361  LLPSVLVLLNRITLDEDDEVRDRSTVLRYLLEQKSKEFNNNYLLSEMSVSSSALERQLNQ 540
            L PS+ VLL R  LD DDEVRDR+T    +L + ++   +N++L  + VS S LER +  
Sbjct: 500  LRPSIQVLLKRCLLDSDDEVRDRATFYLKMLTEAAEGLIHNFILDGLQVSPSGLERSILD 559

Query: 541  YYKCPNLTLQPFDLKEVPVVPAAIEAEIKR 630
            Y +  + +  PFDL+ VPV   A+    KR
Sbjct: 560  YLRSGSYS-SPFDLRVVPVTQQALSQPEKR 588
>sp|P87140|COPG_SCHPO Probable coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
          Length = 905

 Score =  133 bits (334), Expect = 7e-31
 Identities = 89/229 (38%), Positives = 121/229 (52%), Gaps = 6/229 (2%)
 Frame = +1

Query: 1    NLASKYPKKHQSLLTFLSTLLRDNDGYKFXXXXXXXXXXXXXXXXXXXXAGLLHLCEFIE 180
            +L  K+P+K  S+LTFLS +L D  GY+F                      L  LCEFIE
Sbjct: 405  SLCLKFPRKQDSMLTFLSNILCDEGGYEFKRAAVDAISDMIKYIPESKERALAELCEFIE 464

Query: 181  DCEHTKLTQRILYLIGQEGPHLKNPRKYIRYIYNRIMLEDGPVRCTATTALARFG--AQN 354
            DCE+ K+  RIL ++G+EGP    P ++IRYIYNRIMLE+  VR  A +AL +FG  A++
Sbjct: 465  DCEYPKIAVRILSILGEEGPKASEPTRFIRYIYNRIMLENAIVRSAAVSALTKFGLNAED 524

Query: 355  PELLPSVLVLLNRITLDEDDEVRDRSTVLRYLLEQKSKEFNNNYLLSEMSVSSSALERQL 534
              +  SV V+L R   D DDEVRDR+      LE +        + S+   S  ALER L
Sbjct: 525  KFVQRSVKVILTRCLEDADDEVRDRAAFSVKALEDRDAFL--PVVKSDKIPSLPALERSL 582

Query: 535  NQYYKCPNLTLQPFDLKEVPVV-PAAIEAE---IKRNDVDFGLVDLPPS 669
              Y        Q FD+K VPV+    I+AE   IK+   +    ++ P+
Sbjct: 583  VIYISERKFG-QGFDIKSVPVLSQEEIDAENLRIKKATTEVEFTEVTPA 630
>sp|P32074|COPG_YEAST Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
          Length = 935

 Score =  119 bits (297), Expect = 1e-26
 Identities = 86/302 (28%), Positives = 145/302 (48%), Gaps = 17/302 (5%)
 Frame = +1

Query: 4    LASKYPKKHQSLLTFLSTLLRDNDG-YKFXXXXXXXXXXXXXXXXXXXXAGLLHLCEFIE 180
            L+  +P++ +S+L FL  +L++++G +KF                      L +LC+FIE
Sbjct: 404  LSLNFPQEWKSILNFLIDVLKNSEGGFKFKNSIVEALIDIVSFVPQSKELALENLCDFIE 463

Query: 181  DCEHTKLTQRILYLIGQEGPHLKNPRKYIRYIYNRIMLEDGPVRCTATTALARFG--AQN 354
            DCE  ++  RIL+L+G+EGP   NP  Y+R+IYNR++LE+  +R  A  AL++F     +
Sbjct: 464  DCEFNEILVRILHLLGKEGPSAPNPSLYVRHIYNRVVLENSIIRSAAVVALSKFALTKND 523

Query: 355  PELLPSVLVLLNRITLDEDDEVRDRSTV-LRYLLEQKSKE--FNNNYLLSEMSVSSSALE 525
            P L  S++ LL RI  D+DDEVRDR+T+ L ++   ++K+     N + S+      +LE
Sbjct: 524  PTLYESIISLLKRIANDKDDEVRDRATIALEFIDSARNKDDVIAQNLIESKYFYDIPSLE 583

Query: 526  RQLNQYYKCPNLT---------LQPFDLKEVPVVPAAIEAEIKRNDVDFGLVDLPP--SS 672
             +L+ Y      +         ++ F   E+  +    + E   N      +D  P   S
Sbjct: 584  SKLSSYISSNTDSFATAFDVNQVRKFTEDEMKAINLKRKQEQIFNQKSETTLDTTPEAES 643

Query: 673  VSQLNSDMDTVLDRMNFVNVSARLQERYISELSQIXXXXXXXXXXXXXXVVELTEPDLEY 852
            V +  +D ++        +    L  +Y  EL  I               + LTEP+ E+
Sbjct: 644  VPEKRADANSFAGPNLDDHQEDLLATKYADELLSIEQIKPFGQLVNSSRAISLTEPEAEF 703

Query: 853  FV 858
             V
Sbjct: 704  VV 705
>sp|P52488|UBA2_YEAST Ubiquitin-activating enzyme E1-like (Polymerase-interacting protein
           2)
          Length = 636

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 25/128 (19%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
 Frame = +1

Query: 403 DEDDEVRDRSTVLRYLLEQKSKEFNNNYLLSEMSVSSSALERQLNQYYKCPNLTLQPF-- 576
           +EDD  +D  T     +++  +E N  Y L ++ +S  A         + P +  + F  
Sbjct: 209 NEDDNNQDWGTDDAEEIKRIKQETNELYELQKIIISRDAS--------RIPEILNKLFIQ 260

Query: 577 DLKEVPVVPAAIEAEIKRNDVDFGLVDLPPSSVSQLNSDMDTVLDRM-NFVNVSARLQER 753
           D+ ++  +    +   K   +    ++ P  +    ++ + T+ +++ NF+N++ +L +R
Sbjct: 261 DINKLLAIENLWKTRTKPVPLSDSQINTPTKTAQSASNSVGTIQEQISNFINITQKLMDR 320

Query: 754 YISELSQI 777
           Y  E + I
Sbjct: 321 YPKEQNHI 328
>sp|O74851|ADG3_SCHPO Protein adg3 precursor
          Length = 1131

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = -3

Query: 848 SRSGSVNSTTELDFNK-GPSFFNREI*DNSEIYLSCSLADTFTKFMRSNTVSISELSCET 672
           S +GS+N T+  + N  GPS        +S I  S SL +T +    S+TVS +  S ++
Sbjct: 625 SNTGSLNGTSSFNVNSVGPSSSQTTPTSSSSITGSQSLKETSSPAYVSSTVSYTSSSVDS 684

Query: 671 DDGGKSTKPKSTSFLFISASIAAGTTGT 588
                ST   S+     S +  +  T T
Sbjct: 685 SSTYNSTGSSSSDSQSFSGTTYSDPTTT 712
>sp|Q9K9W1|PYRD_BACHD Dihydroorotate dehydrogenase (Dihydroorotate oxidase) (DHOdehase)
           (DHODase) (DHOD)
          Length = 305

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 7/117 (5%)
 Frame = +1

Query: 301 GPVRCTATTALARFGAQNPELLPSVLVLLNRITLDE-------DDEVRDRSTVLRYLLEQ 459
           G +   ATT   RFG   P +  +   +LN I L         D+E+   + V   ++  
Sbjct: 40  GAIAIKATTVEPRFGNPTPRVAETHSGMLNAIGLQNPGLNNVIDNELARLADVDVPIVAN 99

Query: 460 KSKEFNNNYLLSEMSVSSSALERQLNQYYKCPNLTLQPFDLKEVPVVPAAIEAEIKR 630
            +    N+Y+    ++S       L     CPN+         VP V A +  E+KR
Sbjct: 100 IAGSTVNDYVEVAEAISRVDNVHALELNISCPNVKEGGIAFGTVPDVAAQLTQEVKR 156
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,586,840
Number of Sequences: 369166
Number of extensions: 1525202
Number of successful extensions: 4102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4084
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)