Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02012
(865 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53620|COPG_BOVIN Coatomer gamma subunit (Gamma-coat pro... 194 3e-49
sp|Q9Y678|COPG_HUMAN Coatomer gamma subunit (Gamma-coat pro... 193 5e-49
sp|Q9UBF2|COPG2_HUMAN Coatomer gamma-2 subunit (Gamma-2 coa... 192 8e-49
sp|Q9QXK3|COPG2_MOUSE Coatomer gamma-2 subunit (Gamma-2 coa... 191 2e-48
sp|Q22498|COPG_CAEEL Probable coatomer gamma subunit (Gamma... 175 1e-43
sp|P87140|COPG_SCHPO Probable coatomer gamma subunit (Gamma... 133 7e-31
sp|P32074|COPG_YEAST Coatomer gamma subunit (Gamma-coat pro... 119 1e-26
sp|P52488|UBA2_YEAST Ubiquitin-activating enzyme E1-like (P... 31 3.9
sp|O74851|ADG3_SCHPO Protein adg3 precursor 30 6.7
sp|Q9K9W1|PYRD_BACHD Dihydroorotate dehydrogenase (Dihydroo... 30 6.7
>sp|P53620|COPG_BOVIN Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
Length = 874
Score = 194 bits (492), Expect = 3e-49
Identities = 100/203 (49%), Positives = 130/203 (64%)
Frame = +1
Query: 4 LASKYPKKHQSLLTFLSTLLRDNDGYKFXXXXXXXXXXXXXXXXXXXXAGLLHLCEFIED 183
L KYP+KH L+ FL ++LR+ G+++ GL HLCEFIED
Sbjct: 386 LCQKYPRKHAVLMNFLFSMLREEGGFEYKRAIVDCIISIIEENAESKETGLSHLCEFIED 445
Query: 184 CEHTKLTQRILYLIGQEGPHLKNPRKYIRYIYNRIMLEDGPVRCTATTALARFGAQNPEL 363
CE T L RIL+L+GQEGP NP KYIR+IYNR++LE VR A +ALA+FGAQN E+
Sbjct: 446 CEFTVLATRILHLLGQEGPRTSNPSKYIRFIYNRVVLEHAEVRAGAVSALAKFGAQNEEM 505
Query: 364 LPSVLVLLNRITLDEDDEVRDRSTVLRYLLEQKSKEFNNNYLLSEMSVSSSALERQLNQY 543
LPS+LVLL R +D+D+EVRDR+T +LEQK K N Y+L+ ++VS LER L QY
Sbjct: 506 LPSILVLLKRCVMDDDNEVRDRATFYLNVLEQKQKALNAGYILNGLAVSIPGLERALQQY 565
Query: 544 YKCPNLTLQPFDLKEVPVVPAAI 612
P + +PFDLK VP+ A +
Sbjct: 566 TLEP--SEKPFDLKSVPLATAPL 586
>sp|Q9Y678|COPG_HUMAN Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
Length = 874
Score = 193 bits (491), Expect = 5e-49
Identities = 101/201 (50%), Positives = 129/201 (64%)
Frame = +1
Query: 4 LASKYPKKHQSLLTFLSTLLRDNDGYKFXXXXXXXXXXXXXXXXXXXXAGLLHLCEFIED 183
L KYP+KH L+ FL T+LR+ G+++ GL HLCEFIED
Sbjct: 386 LCQKYPRKHAVLMNFLFTMLREEGGFEYKRAIVDCIISIIEENSESKETGLSHLCEFIED 445
Query: 184 CEHTKLTQRILYLIGQEGPHLKNPRKYIRYIYNRIMLEDGPVRCTATTALARFGAQNPEL 363
CE T L RIL+L+GQEGP NP KYIR+IYNR++LE VR A +ALA+FGAQN E+
Sbjct: 446 CEFTVLATRILHLLGQEGPKTTNPSKYIRFIYNRVVLEHEEVRAGAVSALAKFGAQNEEM 505
Query: 364 LPSVLVLLNRITLDEDDEVRDRSTVLRYLLEQKSKEFNNNYLLSEMSVSSSALERQLNQY 543
LPS+LVLL R +D+D+EVRDR+T +LEQK K N Y+L+ ++VS LER L QY
Sbjct: 506 LPSILVLLKRCVMDDDNEVRDRATFYLNVLEQKQKALNAGYILNGLTVSIPGLERALQQY 565
Query: 544 YKCPNLTLQPFDLKEVPVVPA 606
P + +PFDLK VP+ A
Sbjct: 566 TLEP--SEKPFDLKSVPLATA 584
>sp|Q9UBF2|COPG2_HUMAN Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)
Length = 871
Score = 192 bits (489), Expect = 8e-49
Identities = 108/287 (37%), Positives = 156/287 (54%)
Frame = +1
Query: 4 LASKYPKKHQSLLTFLSTLLRDNDGYKFXXXXXXXXXXXXXXXXXXXXAGLLHLCEFIED 183
L KYP+KH ++TFLS +LRD+ G+++ AGL HLCEFIED
Sbjct: 386 LCQKYPRKHSVMMTFLSNMLRDDGGFEYKRAIVDCIISIVEENPESKEAGLAHLCEFIED 445
Query: 184 CEHTKLTQRILYLIGQEGPHLKNPRKYIRYIYNRIMLEDGPVRCTATTALARFGAQNPEL 363
CEHT L +IL+L+G+EGP P KYIR+I+NR++LE+ VR A +ALA+FGAQN L
Sbjct: 446 CEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNESL 505
Query: 364 LPSVLVLLNRITLDEDDEVRDRSTVLRYLLEQKSKEFNNNYLLSEMSVSSSALERQLNQY 543
LPS+LVLL R +D DDEVRDR+T +L+Q+ N Y+ + ++VS +E+ L+QY
Sbjct: 506 LPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSVPGMEKALHQY 565
Query: 544 YKCPNLTLQPFDLKEVPVVPAAIEAEIKRNDVDFGLVDLPPSSVSQLNSDMDTVLDRMNF 723
P + +PFD+K +P+ A + + + LV P ++ D+
Sbjct: 566 TLEP--SEKPFDMKSIPLAMAPVFEQ----KAEITLVATKPEKLAPSRQDI--------- 610
Query: 724 VNVSARLQERYISELSQIXXXXXXXXXXXXXXVVELTEPDLEYFVTC 864
+ +L+ I V+LTE + EYFV C
Sbjct: 611 ----------FQEQLAAIPEFLNIGPLFKSSEPVQLTEAETEYFVRC 647
>sp|Q9QXK3|COPG2_MOUSE Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)
Length = 871
Score = 191 bits (485), Expect = 2e-48
Identities = 108/287 (37%), Positives = 156/287 (54%)
Frame = +1
Query: 4 LASKYPKKHQSLLTFLSTLLRDNDGYKFXXXXXXXXXXXXXXXXXXXXAGLLHLCEFIED 183
L KYP+KH ++TFLS +LRD+ G+++ AGL HLCEFIED
Sbjct: 386 LCHKYPRKHSVMMTFLSNMLRDDGGFEYKKAIVDCIISIVEENPESKEAGLAHLCEFIED 445
Query: 184 CEHTKLTQRILYLIGQEGPHLKNPRKYIRYIYNRIMLEDGPVRCTATTALARFGAQNPEL 363
CEHT L +IL+L+G+EGP P KYIR+I+NR++LE+ VR A +ALA+FGAQN L
Sbjct: 446 CEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNESL 505
Query: 364 LPSVLVLLNRITLDEDDEVRDRSTVLRYLLEQKSKEFNNNYLLSEMSVSSSALERQLNQY 543
LPS+LVLL R +D DDEVRDR+T +L+Q+ N Y+ + ++VS +E+ L+QY
Sbjct: 506 LPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSIPGMEKALHQY 565
Query: 544 YKCPNLTLQPFDLKEVPVVPAAIEAEIKRNDVDFGLVDLPPSSVSQLNSDMDTVLDRMNF 723
P+ +PFD+K +P+ A + + + LV P ++ D+
Sbjct: 566 TLEPSE--KPFDMKSIPLAMAPVFEQKS----EITLVTPKPEKLAPSRQDI--------- 610
Query: 724 VNVSARLQERYISELSQIXXXXXXXXXXXXXXVVELTEPDLEYFVTC 864
+ +L+ I V+LTE + EYFV C
Sbjct: 611 ----------FQEQLAAIPEFMNLGPLFKSSEPVQLTEAETEYFVRC 647
>sp|Q22498|COPG_CAEEL Probable coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
Length = 870
Score = 175 bits (444), Expect = 1e-43
Identities = 91/210 (43%), Positives = 126/210 (60%)
Frame = +1
Query: 1 NLASKYPKKHQSLLTFLSTLLRDNDGYKFXXXXXXXXXXXXXXXXXXXXAGLLHLCEFIE 180
+L S+YP+KH ++ FL+ +LR + Y + AGL HLCEFIE
Sbjct: 380 SLCSRYPRKHTVMMPFLAKMLRSDGSYDYKKAIVETIIAIIEENPDAKVAGLAHLCEFIE 439
Query: 181 DCEHTKLTQRILYLIGQEGPHLKNPRKYIRYIYNRIMLEDGPVRCTATTALARFGAQNPE 360
DCEH L+ R+L+L+G+E P NP YIR+IYNR++LE VR A TALA+FGAQ +
Sbjct: 440 DCEHDNLSTRVLHLLGREAPKTPNPSSYIRFIYNRVILESTKVRAAAVTALAKFGAQCVD 499
Query: 361 LLPSVLVLLNRITLDEDDEVRDRSTVLRYLLEQKSKEFNNNYLLSEMSVSSSALERQLNQ 540
L PS+ VLL R LD DDEVRDR+T +L + ++ +N++L + VS S LER +
Sbjct: 500 LRPSIQVLLKRCLLDSDDEVRDRATFYLKMLTEAAEGLIHNFILDGLQVSPSGLERSILD 559
Query: 541 YYKCPNLTLQPFDLKEVPVVPAAIEAEIKR 630
Y + + + PFDL+ VPV A+ KR
Sbjct: 560 YLRSGSYS-SPFDLRVVPVTQQALSQPEKR 588
>sp|P87140|COPG_SCHPO Probable coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
Length = 905
Score = 133 bits (334), Expect = 7e-31
Identities = 89/229 (38%), Positives = 121/229 (52%), Gaps = 6/229 (2%)
Frame = +1
Query: 1 NLASKYPKKHQSLLTFLSTLLRDNDGYKFXXXXXXXXXXXXXXXXXXXXAGLLHLCEFIE 180
+L K+P+K S+LTFLS +L D GY+F L LCEFIE
Sbjct: 405 SLCLKFPRKQDSMLTFLSNILCDEGGYEFKRAAVDAISDMIKYIPESKERALAELCEFIE 464
Query: 181 DCEHTKLTQRILYLIGQEGPHLKNPRKYIRYIYNRIMLEDGPVRCTATTALARFG--AQN 354
DCE+ K+ RIL ++G+EGP P ++IRYIYNRIMLE+ VR A +AL +FG A++
Sbjct: 465 DCEYPKIAVRILSILGEEGPKASEPTRFIRYIYNRIMLENAIVRSAAVSALTKFGLNAED 524
Query: 355 PELLPSVLVLLNRITLDEDDEVRDRSTVLRYLLEQKSKEFNNNYLLSEMSVSSSALERQL 534
+ SV V+L R D DDEVRDR+ LE + + S+ S ALER L
Sbjct: 525 KFVQRSVKVILTRCLEDADDEVRDRAAFSVKALEDRDAFL--PVVKSDKIPSLPALERSL 582
Query: 535 NQYYKCPNLTLQPFDLKEVPVV-PAAIEAE---IKRNDVDFGLVDLPPS 669
Y Q FD+K VPV+ I+AE IK+ + ++ P+
Sbjct: 583 VIYISERKFG-QGFDIKSVPVLSQEEIDAENLRIKKATTEVEFTEVTPA 630
>sp|P32074|COPG_YEAST Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
Length = 935
Score = 119 bits (297), Expect = 1e-26
Identities = 86/302 (28%), Positives = 145/302 (48%), Gaps = 17/302 (5%)
Frame = +1
Query: 4 LASKYPKKHQSLLTFLSTLLRDNDG-YKFXXXXXXXXXXXXXXXXXXXXAGLLHLCEFIE 180
L+ +P++ +S+L FL +L++++G +KF L +LC+FIE
Sbjct: 404 LSLNFPQEWKSILNFLIDVLKNSEGGFKFKNSIVEALIDIVSFVPQSKELALENLCDFIE 463
Query: 181 DCEHTKLTQRILYLIGQEGPHLKNPRKYIRYIYNRIMLEDGPVRCTATTALARFG--AQN 354
DCE ++ RIL+L+G+EGP NP Y+R+IYNR++LE+ +R A AL++F +
Sbjct: 464 DCEFNEILVRILHLLGKEGPSAPNPSLYVRHIYNRVVLENSIIRSAAVVALSKFALTKND 523
Query: 355 PELLPSVLVLLNRITLDEDDEVRDRSTV-LRYLLEQKSKE--FNNNYLLSEMSVSSSALE 525
P L S++ LL RI D+DDEVRDR+T+ L ++ ++K+ N + S+ +LE
Sbjct: 524 PTLYESIISLLKRIANDKDDEVRDRATIALEFIDSARNKDDVIAQNLIESKYFYDIPSLE 583
Query: 526 RQLNQYYKCPNLT---------LQPFDLKEVPVVPAAIEAEIKRNDVDFGLVDLPP--SS 672
+L+ Y + ++ F E+ + + E N +D P S
Sbjct: 584 SKLSSYISSNTDSFATAFDVNQVRKFTEDEMKAINLKRKQEQIFNQKSETTLDTTPEAES 643
Query: 673 VSQLNSDMDTVLDRMNFVNVSARLQERYISELSQIXXXXXXXXXXXXXXVVELTEPDLEY 852
V + +D ++ + L +Y EL I + LTEP+ E+
Sbjct: 644 VPEKRADANSFAGPNLDDHQEDLLATKYADELLSIEQIKPFGQLVNSSRAISLTEPEAEF 703
Query: 853 FV 858
V
Sbjct: 704 VV 705
>sp|P52488|UBA2_YEAST Ubiquitin-activating enzyme E1-like (Polymerase-interacting protein
2)
Length = 636
Score = 31.2 bits (69), Expect = 3.9
Identities = 25/128 (19%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Frame = +1
Query: 403 DEDDEVRDRSTVLRYLLEQKSKEFNNNYLLSEMSVSSSALERQLNQYYKCPNLTLQPF-- 576
+EDD +D T +++ +E N Y L ++ +S A + P + + F
Sbjct: 209 NEDDNNQDWGTDDAEEIKRIKQETNELYELQKIIISRDAS--------RIPEILNKLFIQ 260
Query: 577 DLKEVPVVPAAIEAEIKRNDVDFGLVDLPPSSVSQLNSDMDTVLDRM-NFVNVSARLQER 753
D+ ++ + + K + ++ P + ++ + T+ +++ NF+N++ +L +R
Sbjct: 261 DINKLLAIENLWKTRTKPVPLSDSQINTPTKTAQSASNSVGTIQEQISNFINITQKLMDR 320
Query: 754 YISELSQI 777
Y E + I
Sbjct: 321 YPKEQNHI 328
>sp|O74851|ADG3_SCHPO Protein adg3 precursor
Length = 1131
Score = 30.4 bits (67), Expect = 6.7
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = -3
Query: 848 SRSGSVNSTTELDFNK-GPSFFNREI*DNSEIYLSCSLADTFTKFMRSNTVSISELSCET 672
S +GS+N T+ + N GPS +S I S SL +T + S+TVS + S ++
Sbjct: 625 SNTGSLNGTSSFNVNSVGPSSSQTTPTSSSSITGSQSLKETSSPAYVSSTVSYTSSSVDS 684
Query: 671 DDGGKSTKPKSTSFLFISASIAAGTTGT 588
ST S+ S + + T T
Sbjct: 685 SSTYNSTGSSSSDSQSFSGTTYSDPTTT 712
>sp|Q9K9W1|PYRD_BACHD Dihydroorotate dehydrogenase (Dihydroorotate oxidase) (DHOdehase)
(DHODase) (DHOD)
Length = 305
Score = 30.4 bits (67), Expect = 6.7
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 7/117 (5%)
Frame = +1
Query: 301 GPVRCTATTALARFGAQNPELLPSVLVLLNRITLDE-------DDEVRDRSTVLRYLLEQ 459
G + ATT RFG P + + +LN I L D+E+ + V ++
Sbjct: 40 GAIAIKATTVEPRFGNPTPRVAETHSGMLNAIGLQNPGLNNVIDNELARLADVDVPIVAN 99
Query: 460 KSKEFNNNYLLSEMSVSSSALERQLNQYYKCPNLTLQPFDLKEVPVVPAAIEAEIKR 630
+ N+Y+ ++S L CPN+ VP V A + E+KR
Sbjct: 100 IAGSTVNDYVEVAEAISRVDNVHALELNISCPNVKEGGIAFGTVPDVAAQLTQEVKR 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,586,840
Number of Sequences: 369166
Number of extensions: 1525202
Number of successful extensions: 4102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4084
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)