Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01998
(864 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule ... 88 4e-17
sp|P16621|LAR_DROME Tyrosine-protein phosphatase Lar precur... 84 5e-16
sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-... 82 3e-15
sp|P28685|CNTN2_CHICK Contactin 2 precursor (Axonin-1) 79 2e-14
sp|P32004|L1CAM_HUMAN Neural cell adhesion molecule L1 prec... 78 3e-14
sp|Q810U4|NRCAM_MOUSE Neuronal cell adhesion molecule precu... 77 5e-14
sp|Q7ZW34|CNTN5_BRARE Contactin 5 precursor 77 6e-14
sp|P97603|NEO1_RAT Neogenin precursor 77 6e-14
sp|Q92859|NEO1_HUMAN Neogenin precursor 76 1e-13
sp|Q98902|L1CAM_FUGRU Neural cell adhesion molecule L1 prec... 76 1e-13
>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule precursor (CHD2)
Length = 2012
Score = 87.8 bits (216), Expect = 4e-17
Identities = 78/273 (28%), Positives = 125/273 (45%), Gaps = 12/273 (4%)
Frame = +2
Query: 47 FTQYEFRVILVNEVGYSPAAY-ISIRTKEDYPEGYP--TQIVCTPKENQLELEWNPPAQG 217
FTQY V N G P++ I T ED P P Q + T E+ + + W+ ++
Sbjct: 1057 FTQYGLVVQACNRAGTGPSSQEIITTTLEDVPSYPPENVQAIATSPES-ISISWSTLSKE 1115
Query: 218 FVNGVVTGYEILYFRTDKNGEPDNIVRLVSKTRHSLR--NVLPNTSYTIQVRIRNSIGSG 391
+NG++ G+ ++Y+ +GE I + ++ T+ SL + T+Y+IQV G G
Sbjct: 1116 ALNGILQGFRVIYWANLMDGELGEI-KNITTTQPSLELDGLEKYTNYSIQVLAFTRAGDG 1174
Query: 392 PPSESINCTTKEAAPEAPSEIRAYFIDDKCAKVTWTPPNNSNGIVRHYIMTVLKKSHKVT 571
SE I TKE P P+ ++A V+W PP NGI+R Y + SH
Sbjct: 1175 VRSEQIFTRTKEDVPGPPAGVKAAAASASMVFVSWLPPLKLNGIIRKYTVFC---SHPYP 1231
Query: 572 SVQLSATKKSNSYFSHILCELVRSESYEIEVQAVTI-----KEGLVNRQSIKNVAEGIWS 736
+V +S + S FS+ + L R+ Y + V AVT ++ + + I +
Sbjct: 1232 TV-ISEFEASPDSFSYRIPNLSRNRQYSVWVVAVTSAGRGNSSEIITVEPLAKAPARILT 1290
Query: 737 LSRNIVAHSYKYIELECETI--PSDHDVKWTRN 829
S + K I L C+ + PS VKW ++
Sbjct: 1291 FSGTVTTPWMKDIVLPCKAVGDPSP-AVKWMKD 1322
Score = 65.5 bits (158), Expect = 2e-10
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Frame = +2
Query: 11 LNISTIISELLIFTQYEFRVILVNEVGYS-PAAYISIRTKEDYPEGYPTQIVCTPKENQ- 184
LN +TII ++ + Y R+ N +G S P+ ++I E P+G P ++ P +Q
Sbjct: 942 LNSATII-DIHPSSTYSIRMYAKNRIGKSEPSNELTITADEAAPDGPPQEVHLEPISSQS 1000
Query: 185 LELEWNPPAQGFVNGVVTGYEILYFRTDKNGEPD-NIVRLVSKTR---HSLRNVLPNTSY 352
+ + W P + NG++ GY+I Y G NI+ + + ++L N+ T Y
Sbjct: 1001 IRVTWKAPKKHLQNGIIRGYQIGYREYSTGGNFQFNIISVDTSGDSEVYTLDNLNKFTQY 1060
Query: 353 TIQVRIRNSIGSGPPSESINCTTKEAAPEAPSE-IRAYFIDDKCAKVTWTPPNNS--NGI 523
+ V+ N G+GP S+ I TT E P P E ++A + ++W+ + NGI
Sbjct: 1061 GLVVQACNRAGTGPSSQEIITTTLEDVPSYPPENVQAIATSPESISISWSTLSKEALNGI 1120
Query: 524 VRHY 535
++ +
Sbjct: 1121 LQGF 1124
Score = 55.8 bits (133), Expect = 1e-07
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Frame = +2
Query: 173 KENQLELEWNPPAQGFVNGVVTGYEILYFRTDKNGEPDNIVRLVSKTRHS--LRNVLPNT 346
K + L W G N +TGY+I + + + VS +S + ++ P++
Sbjct: 897 KARTITLRWTMGFDG--NSPITGYDIECKNKSDSWDSAQRTKDVSPQLNSATIIDIHPSS 954
Query: 347 SYTIQVRIRNSIGSGPPSESINCTTKEAAPEA-PSEIRAYFIDDKCAKVTWTPPNN--SN 517
+Y+I++ +N IG PS + T EAAP+ P E+ I + +VTW P N
Sbjct: 955 TYSIRMYAKNRIGKSEPSNELTITADEAAPDGPPQEVHLEPISSQSIRVTWKAPKKHLQN 1014
Query: 518 GIVRHY 535
GI+R Y
Sbjct: 1015 GIIRGY 1020
>sp|P16621|LAR_DROME Tyrosine-protein phosphatase Lar precursor
(Protein-tyrosine-phosphate phosphohydrolase) (dLAR)
Length = 2029
Score = 84.0 bits (206), Expect = 5e-16
Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 3/179 (1%)
Frame = +2
Query: 8 LLNISTIISELLIFTQYEFRVILVNEVGYSP-AAYISIRTKEDYPEGYPTQI-VCTPKEN 181
++ + ++ L +T+YEF VI VN +G P +A + T E E P + V T +
Sbjct: 372 IITMYYVVRALSPYTEYEFYVIAVNNIGRGPPSAPATCTTGETKMESAPRNVQVRTLSSS 431
Query: 182 QLELEWNPPAQGFVNGVVTGYEILYFRTDKNGEPDNIVRLVSKTR-HSLRNVLPNTSYTI 358
+ + W PP NG VTGY++ Y E ++V + ++ + P+ YT+
Sbjct: 432 TMVITWEPPETP--NGQVTGYKVYYTTNSNQPEASWNSQMVDNSELTTVSELTPHAIYTV 489
Query: 359 QVRIRNSIGSGPPSESINCTTKEAAPEAPSEIRAYFIDDKCAKVTWTPPNNSNGIVRHY 535
+V+ S+G+GP S + ++ P PS RA I + + WT P +S+ + HY
Sbjct: 490 RVQAYTSMGAGPMSTPVQVKAQQGVPSQPSNFRATDIGETAVTLQWTKPTHSSENIVHY 548
Score = 66.6 bits (161), Expect = 8e-11
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 3/216 (1%)
Frame = +2
Query: 53 QYEFRVILVNEVGYSPAAYISIRTKEDYPEGYPTQIVC---TPKENQLELEWNPPAQGFV 223
+YEFRV N +G +T E P G P+ I TP + L + W+PP +
Sbjct: 881 EYEFRVAGSNHIGIGQETVKIFQTPEGTPGGPPSNITIRFQTP--DVLCVTWDPPTREHR 938
Query: 224 NGVVTGYEILYFRTDKNGEPDNIVRLVSKTRHSLRNVLPNTSYTIQVRIRNSIGSGPPSE 403
NG++T Y++ + + +G R ++ + N+ NT Y +VR G+GP S+
Sbjct: 939 NGIITRYDVQFHKKIDHGLGSE--RNMTLRKAVFTNLEENTEYIFRVRAYTKQGAGPFSD 996
Query: 404 SINCTTKEAAPEAPSEIRAYFIDDKCAKVTWTPPNNSNGIVRHYIMTVLKKSHKVTSVQL 583
+ T+ AP ++A ++ A++ W P + ++ + I + + Q
Sbjct: 997 KLIVETERDMGRAPMSLQAEATSEQTAEIWWEPVTSRGKLLGYKIFYTMTAVEDLDDWQ- 1055
Query: 584 SATKKSNSYFSHILCELVRSESYEIEVQAVTIKEGL 691
TK S L L + Y + + A K GL
Sbjct: 1056 --TKTVGLTESADLVNLEKFAQYAVAI-AARFKNGL 1088
Score = 65.9 bits (159), Expect = 1e-10
Identities = 61/229 (26%), Positives = 95/229 (41%), Gaps = 9/229 (3%)
Frame = +2
Query: 5 TLLNISTIISELLIFTQYEFRVILVNEVGYSPAAY-ISIRTKEDYPEGYPTQIVCTP-KE 178
TL S ++ EL +T+Y+ V+ VG P ++ I +RT+ED P G P + TP
Sbjct: 664 TLNMTSIVLDELKRWTEYKIWVLAGTSVGDGPRSHPIILRTQEDVP-GDPQDVKATPLNS 722
Query: 179 NQLELEWNPPAQGFVNGVVTGYEI--LYFRTDKNG---EPDNIVRLVSKTRHSLRNVLPN 343
+ + W PP + NG++ GY I R + G EP +V ++ + P+
Sbjct: 723 TSIHVSWKPPLEKDRNGIIRGYHIHAQELRDEGKGFLNEPFKF-DVVDTLEFNVTGLQPD 781
Query: 344 TSYTIQVRIRNSIGSGPPSESINCTTKEAAPEAPSEIRAYFIDDKCAKV--TWTPPNNSN 517
T Y+IQV G G S +I T P P+ + + W P +
Sbjct: 782 TKYSIQVAALTRKGDGDRSAAIVVKTPGGVPVRPTVSLKIMEREPIVSIELEWERPAQTY 841
Query: 518 GIVRHYIMTVLKKSHKVTSVQLSATKKSNSYFSHILCELVRSESYEIEV 664
G +R Y + K + LS + + F + L R YE V
Sbjct: 842 GELRGYRLRWGVKDQALKEEMLSGPQMTKKRFDN----LERGVEYEFRV 886
Score = 60.8 bits (146), Expect = 5e-09
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 3/145 (2%)
Frame = +2
Query: 110 ISIRTKEDYPEGYPTQIVC-TPKENQLELEWNPPAQGFVNGVVTGYEILYFRTDKNGEPD 286
I +RTK+ P P I + L W PP NG + Y++ + + +
Sbjct: 601 IPVRTKQYVPGAPPRNITAIATSSTTISLSWLPPPVERSNGRIIYYKVFFVEVGREDDEA 660
Query: 287 NIVRLVSKTRHSLRNVLPNTSYTIQVRIRNSIGSGPPSESINCTTKEAAPEAPSEIRAYF 466
+ L + T L + T Y I V S+G GP S I T+E P P +++A
Sbjct: 661 TTMTL-NMTSIVLDELKRWTEYKIWVLAGTSVGDGPRSHPIILRTQEDVPGDPQDVKATP 719
Query: 467 IDDKCAKVTWTPP--NNSNGIVRHY 535
++ V+W PP + NGI+R Y
Sbjct: 720 LNSTSIHVSWKPPLEKDRNGIIRGY 744
Score = 56.2 bits (134), Expect = 1e-07
Identities = 59/226 (26%), Positives = 96/226 (42%), Gaps = 8/226 (3%)
Frame = +2
Query: 23 TIISELLIFTQYEFRVILVNEVGYSPAAY-ISIRTKEDYPEGYPTQIVCTP-KENQLELE 196
T +SEL Y RV +G P + + ++ ++ P P+ T E + L+
Sbjct: 476 TTVSELTPHAIYTVRVQAYTSMGAGPMSTPVQVKAQQGVPS-QPSNFRATDIGETAVTLQ 534
Query: 197 WNPPAQGFVNGVVTGYEILYFRTDKNGEPDNIVRLVSKTRHSLRNVLPNTSYTIQVRIRN 376
W P N + YE+ + T N R+ + ++L + P+T Y I + R+
Sbjct: 535 WTKPTHSSEN--IVHYELYWNDTYANQAHHK--RISNSEAYTLDGLYPDTLYYIWLAARS 590
Query: 377 SIGSGPPSESINCTTKEAAPEA-PSEIRAYFIDDKCAKVTWTPP--NNSNGIVRHY---I 538
G G + I TK+ P A P I A ++W PP SNG + +Y
Sbjct: 591 QRGEGATTPPIPVRTKQYVPGAPPRNITAIATSSTTISLSWLPPPVERSNGRIIYYKVFF 650
Query: 539 MTVLKKSHKVTSVQLSATKKSNSYFSHILCELVRSESYEIEVQAVT 676
+ V ++ + T++ L+ T S +L EL R Y+I V A T
Sbjct: 651 VEVGREDDEATTMTLNMT-------SIVLDELKRWTEYKIWVLAGT 689
Score = 54.3 bits (129), Expect = 4e-07
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 1/146 (0%)
Frame = +2
Query: 242 YEILYFRTDKNGEPDNIVRLVSKTRHSLRNVLPNTSYTIQVRIRNSIGSGPPSESINCTT 421
Y ++ ++ + + + + + +R + P T Y V N+IG GPPS CTT
Sbjct: 352 YYVIQYKPKNANQAFSEISGIITMYYVVRALSPYTEYEFYVIAVNNIGRGPPSAPATCTT 411
Query: 422 KEAAPE-APSEIRAYFIDDKCAKVTWTPPNNSNGIVRHYIMTVLKKSHKVTSVQLSATKK 598
E E AP ++ + +TW PP NG V Y + S++ ++
Sbjct: 412 GETKMESAPRNVQVRTLSSSTMVITWEPPETPNGQVTGYKVYYTTNSNQ-PEASWNSQMV 470
Query: 599 SNSYFSHILCELVRSESYEIEVQAVT 676
NS + + EL Y + VQA T
Sbjct: 471 DNSELTTV-SELTPHAIYTVRVQAYT 495
Score = 47.0 bits (110), Expect = 7e-05
Identities = 55/219 (25%), Positives = 88/219 (40%), Gaps = 6/219 (2%)
Frame = +2
Query: 50 TQYEFRVILVNEVGYSP-AAYISIRTKEDYPEGYPTQIVCTPKEN--QLELEWNPPAQGF 220
T+Y +V + G +A I ++T P + +E +ELEW PAQ +
Sbjct: 782 TKYSIQVAALTRKGDGDRSAAIVVKTPGGVPVRPTVSLKIMEREPIVSIELEWERPAQTY 841
Query: 221 VNGVVTGYEILYFRTDKNGEPDNIVRLVSKTRHSLRNVLPNTSYTIQVRIRNSIGSGPPS 400
G + GY + + D+ + ++ T+ N+ Y +V N IG G +
Sbjct: 842 --GELRGYRLRWGVKDQ-ALKEEMLSGPQMTKKRFDNLERGVEYEFRVAGSNHIGIGQET 898
Query: 401 ESINCTTKEAAPEAPSEIRAYFIDDKCAKVTWTPP--NNSNGIVRHYIMTVLKK-SHKVT 571
I T + PS I F VTW PP + NGI+ Y + KK H +
Sbjct: 899 VKIFQTPEGTPGGPPSNITIRFQTPDVLCVTWDPPTREHRNGIITRYDVQFHKKIDHGLG 958
Query: 572 SVQLSATKKSNSYFSHILCELVRSESYEIEVQAVTIKEG 688
S + +K+ + L + Y V+A T K+G
Sbjct: 959 SERNMTLRKA------VFTNLEENTEYIFRVRAYT-KQG 990
Score = 33.5 bits (75), Expect = 0.79
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 14/167 (8%)
Frame = +2
Query: 110 ISIRTK-EDYPEGYPTQIVCTPKENQLELEWNPPAQGFVNGVVTGYEILYFRTDKNG--- 277
+++R K ED P V T + + L W+PP + ++ + D G
Sbjct: 1095 VTVRIKPEDVPLNLRAHDVST---HSMTLSWSPPIRLTPVNYKISFDAMKVFVDSQGFSQ 1151
Query: 278 -----EPDNIVRLVSKTRHSLRNVLPNTSYTIQVRIRNSIGSGPPSESINCTTKEAAPEA 442
+ + I++ KT H++ + P T+Y + V S S P I TT+ AAP+
Sbjct: 1152 TQIVPKREIILKHYVKT-HTINELSPFTTYNVNVSAIPSDYSYRPPTKITVTTQMAAPQP 1210
Query: 443 PSEIRAY-FIDDKCAKVTWTPPNNSNGIVRHYIMTVLKKS----HKV 568
+ Y ++ + V + G + HY + V+ + HK+
Sbjct: 1211 MVKPDFYGVVNGEEILVILPQASEEYGPISHYYLVVVPEDKSNLHKI 1257
>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 precursor (Down
syndrome cell adhesion molecule 2)
Length = 2053
Score = 81.6 bits (200), Expect = 3e-15
Identities = 69/279 (24%), Positives = 115/279 (41%), Gaps = 9/279 (3%)
Frame = +2
Query: 29 ISELLIFTQYEFRVILVNEVGYSPAAY-ISIRTKEDYPEGYPTQIVCTPKENQLE-LEWN 202
+ L F QY V N G P++ I+ T ED P P + + + + W+
Sbjct: 1053 LDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLEDVPSQPPENVRALSITSDVAVISWS 1112
Query: 203 PPAQGFVNGVVTGYEILYFRTDKNGEPDNIVRLVS-KTRHSLRNVLPNTSYTIQVRIRNS 379
P + +NGV+ GY ++++ +GE + + + + R LR + T+Y++QV
Sbjct: 1113 EPPRSTLNGVLKGYRVIFWSLYVDGEWGEMQNITTTRERVELRGMEKFTNYSVQVLAYTQ 1172
Query: 380 IGSGPPSESINCTTKEAAPEAPSEIRAYFIDDKCAKVTWTPPNNSNGIVRHYIMTVLKKS 559
G G S + TKE P P+ I+A V+W PP NG++R Y T+ S
Sbjct: 1173 AGDGVRSSVLYIQTKEDVPGPPAGIKAVPSSASSVVVSWLPPTKPNGVIRKY--TIFCSS 1230
Query: 560 HKVTSVQLSATKKSNSYFSHILCELVRSESYEIEVQAVTI-----KEGLVNRQSIKNVAE 724
S + S + + L R + Y + V AVT V +
Sbjct: 1231 PGSGQPAPSEYETSPEQLFYRIAHLNRGQQYLLWVAAVTSAGRGNSSEKVTIEPAGKAPA 1290
Query: 725 GIWSLSRNIVAHSYKYIELECETIPSDHD-VKWTRNDKE 838
I S + K + L C ++ VKWT++ ++
Sbjct: 1291 KIISFGGTVTTPWMKDVRLPCNSVGDPAPAVKWTKDSED 1329
Score = 59.3 bits (142), Expect = 1e-08
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 9/175 (5%)
Frame = +2
Query: 173 KENQLELEWNPPAQGFVNGVVTGYEILYFRTDKNGEPDNIVRLVSKT--RHSLRNVLPNT 346
K + L W G N ++TG++I Y + + R +S T + ++ ++ P +
Sbjct: 899 KARSMNLRWTQRFDG--NSIITGFDIEYKNKSDSWDFKQSTRNISPTINQANIVDLHPAS 956
Query: 347 SYTIQVRIRNSIGSGPPSESINCTTKEAAPEA-PSEIRAYFIDDKCAKVTWTPPNN--SN 517
Y+I++ N IG PS+ + +T+EAAP+ P ++ + + +VTW P N
Sbjct: 957 VYSIRMYSFNKIGRSEPSKELTISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQN 1016
Query: 518 GIVRHYIMTVLKKS----HKVTSVQLSATKKSNSYFSHILCELVRSESYEIEVQA 670
G++R Y + + S + + V++ AT S Y L L + Y + VQA
Sbjct: 1017 GVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVY---TLDNLKKFAQYGVVVQA 1068
Score = 34.7 bits (78), Expect = 0.35
Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 1/179 (0%)
Frame = +2
Query: 137 PEGYPTQIVCTPKENQLELEWNPPAQGFVNGVVTGYEILYFRTDKNGEPDNIVRLVSKTR 316
P P V + + L W P G + G+ +L + D + E ++ S+
Sbjct: 1383 PPDQPRLTVSKTSASSITLTWIPGDNG--GSSIRGF-VLQYSVDNSEEWKDVFISSSERS 1439
Query: 317 HSLRNVLPNTSYTIQVRIRNSIGSGPPSESINCTTKEAAPEAPSEIRAY-FIDDKCAKVT 493
L ++ T Y +++ +NS+GSG SE I T P + + I+ A++
Sbjct: 1440 FKLDSLKCGTWYKVKLAAKNSVGSGRISEIIEAKTHGREPSFSKDQHLFTHINSTHARLN 1499
Query: 494 WTPPNNSNGIVRHYIMTVLKKSHKVTSVQLSATKKSNSYFSHILCELVRSESYEIEVQA 670
NN + T + ++ ++NS L EL + YE+ ++A
Sbjct: 1500 LQGWNNGGCPI-----TAIVLEYRPKGTWAWQGLRANSSGEVFLTELREATWYELRMRA 1553
>sp|P28685|CNTN2_CHICK Contactin 2 precursor (Axonin-1)
Length = 1036
Score = 79.0 bits (193), Expect = 2e-14
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 5/189 (2%)
Frame = +2
Query: 47 FTQYEFRVILVNEVGYSPAAYISI-RTKEDYPEGYPTQIVCTPK-ENQLELEWNPPAQGF 220
+T +E ++ N G P + +I + E+ P+ P ++ +++++ W P QG
Sbjct: 776 YTPFEVKIKAYNRKGEGPESLTAIVYSAEEEPKVAPFRVTAKAVLSSEMDVSWEPVEQGD 835
Query: 221 VNGVVTGYEILYFRT-DKNGEPDNIVRLVSKTRHSLRNVLPNTSYTIQVRIRNSIGSGPP 397
+ GV+ GYEI Y++ DK D + T + + PNT Y + VR N G+GPP
Sbjct: 836 MTGVLLGYEIRYWKDGDKEEAADRVRTAGLVTSAHVTGLNPNTKYHVSVRAYNRAGAGPP 895
Query: 398 SESINCTTKEAAPEAPSEIRAYFIDDKCAKVTWTP--PNNSNGIVRHYIMTVLKKSHKVT 571
S S N TT + P P ++ + + W P V Y M + SH
Sbjct: 896 SPSTNITTTKPPPRRPPGNISWTLTGSTVTIKWDPVVAQADESAVTGYKMLYRQDSHSAP 955
Query: 572 SVQLSATKK 598
++ L++ +
Sbjct: 956 TLYLASKSR 964
Score = 49.7 bits (117), Expect = 1e-05
Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 8/187 (4%)
Frame = +2
Query: 29 ISELLIFTQYEFRVILVNEVGYSPAAYIS--IRTKEDYPEGYPTQIVCTP-KENQLELEW 199
+ L+ + YEFRV+ N +G + S IRTKE P P+ + N+L + W
Sbjct: 667 VVNLIPWMDYEFRVLASNILGVGEPSLPSSKIRTKEAAPTVAPSGLGGGGGAPNELIINW 726
Query: 200 NPPAQGFVNGVVTGYEILYFRTDKNGEPDNIVRLVSKTRHSLRN--VLPNTSYTIQVRIR 373
P + + NG GY + + + G V + RN + P T + ++++
Sbjct: 727 TPTLRDYQNGDGFGYILSFRKKGTQGWLTARVPHAESLHYVYRNESIGPYTPFEVKIKAY 786
Query: 374 NSIGSGPPSESINCTTKEAAPE-APSEIRAYFIDDKCAKVTWTP--PNNSNGIVRHYIMT 544
N G GP S + + E P+ AP + A + V+W P + G++ Y +
Sbjct: 787 NRKGEGPESLTAIVYSAEEEPKVAPFRVTAKAVLSSEMDVSWEPVEQGDMTGVLLGYEIR 846
Query: 545 VLKKSHK 565
K K
Sbjct: 847 YWKDGDK 853
Score = 43.5 bits (101), Expect = 8e-04
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Frame = +2
Query: 50 TQYEFRVILVNEVGYSPAA-YISIRTKEDYPEGYPTQIVCTPKENQLELEWNPPAQGFVN 226
T+Y V N G P + +I T + P P I T + + ++W+P
Sbjct: 878 TKYHVSVRAYNRAGAGPPSPSTNITTTKPPPRRPPGNISWTLTGSTVTIKWDPVVAQADE 937
Query: 227 GVVTGYEILYFRTDKNGEPDNIVRLVSKTRHSLRNVLPNTSYTIQVRIRNSIGSGPPSE 403
VTGY++LY R D + P + L SK+R + T +Q+R+ G G P+E
Sbjct: 938 SAVTGYKMLY-RQDSHSAPT--LYLASKSRIDIPVPEDFTHAFVQIRVTGPGGDGTPAE 993
>sp|P32004|L1CAM_HUMAN Neural cell adhesion molecule L1 precursor (N-CAM L1) (CD171 antigen)
Length = 1257
Score = 78.2 bits (191), Expect = 3e-14
Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 11/232 (4%)
Frame = +2
Query: 26 IISELLIFTQYEFRVILVNEVGYSPAAYISIR-TKEDYPEGYPT-QIVCTPKENQLELEW 199
++S F YE +V VN G P ++I + EDYP+ P + + + + ++W
Sbjct: 774 VVSNTSTFVPYEIKVQAVNSQGKGPEPQVTIGYSGEDYPQAIPELEGIEILNSSAVLVKW 833
Query: 200 NPPAQGFVNGVVTGYEILYFR-------TDKNGEPDNIVRLVSKTRHSLRNVLPNTSYTI 358
P V G + GY + Y+R + ++ D++V + T L + P +SY +
Sbjct: 834 RPVDLAQVKGHLRGYNVTYWREGSQRKHSKRHIHKDHVVVPANTTSVILSGLRPYSSYHL 893
Query: 359 QVRIRNSIGSGPPSESINCTTKEAAPEAPSEIRAYFIDDKCAKVTWTPPNNSNGIVRHYI 538
+V+ N GSGP SE +T E P P + + + W PP + NG++ Y+
Sbjct: 894 EVQAFNGRGSGPASE-FTFSTPEGVPGHPEALHLECQSNTSLLLRWQPPLSHNGVLTGYV 952
Query: 539 MTV--LKKSHKVTSVQLSATKKSNSYFSHILCELVRSESYEIEVQAVTIKEG 688
++ L + K QLS + +H L +L Y ++QA T KEG
Sbjct: 953 LSYHPLDEGGK---GQLSFNLRDPELRTHNLTDLSPHLRYRFQLQATT-KEG 1000
Score = 35.4 bits (80), Expect = 0.21
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Frame = +2
Query: 176 ENQLELEWNPPAQGFVNGVVTGYEILYFRTDKNGEPD---NIVRLVSKTRHSLRNVLPNT 346
++Q+ + W+P N + Y+I + DK P+ ++ ++ + + P
Sbjct: 628 QSQVRVSWSPAEDH--NAPIEKYDIEF--EDKEMAPEKWYSLGKVPGNQTSTTLKLSPYV 683
Query: 347 SYTIQVRIRNSIGSGPPSE-SINCTTKEAAPEA-PSEIRAYFIDDKCAKVTWTP 502
YT +V N G G PS S T EAAPE P +++ + +TW P
Sbjct: 684 HYTFRVTAINKYGPGEPSPVSETVVTPEAAPEKNPVDVKGEGNETTNMVITWKP 737
>sp|Q810U4|NRCAM_MOUSE Neuronal cell adhesion molecule precursor (Nr-CAM) (NgCAM-related
cell adhesion molecule) (Ng-CAM-related) (mBravo)
Length = 1256
Score = 77.4 bits (189), Expect = 5e-14
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 9/181 (4%)
Frame = +2
Query: 26 IISELLIFTQYEFRVILVNEVGYSPA-AYISIRTKEDYPEGYPTQI-VCTPKENQLELEW 199
I+S F Y +V +N+VG++P A + + ED P P + V E+ W
Sbjct: 801 IVSGTPTFVPYLIKVQALNDVGFAPEPAAVMGHSGEDLPMVAPGNVRVSVVNSTLAEVHW 860
Query: 200 NPPAQGFVNGVVTGYEILYFRTDKNGEPD--NIVRLV-----SKTRHSLRNVLPNTSYTI 358
+P V G + GY I Y++T + + + +I + + +KT L + P + Y +
Sbjct: 861 DPVPPKSVRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGTKTHGMLPGLQPYSHYAL 920
Query: 359 QVRIRNSIGSGPPSESINCTTKEAAPEAPSEIRAYFIDDKCAKVTWTPPNNSNGIVRHYI 538
VR+ N G GP S T E P APS ++ + W PP++ NGI+ YI
Sbjct: 921 NVRVVNGKGEGPASTDRGFHTPEGVPSAPSSLKIVNPTLDSLTLEWDPPSHPNGILTEYI 980
Query: 539 M 541
+
Sbjct: 981 L 981
Score = 52.4 bits (124), Expect = 2e-06
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Frame = +2
Query: 47 FTQYEFRVILVNEVGYSPAAYI-SIRTKEDYPEGYPTQIVCTPKENQLELEWNPPAQGFV 223
++ Y V +VN G PA+ T E P + + P + L LEW+PP+
Sbjct: 915 YSHYALNVRVVNGKGEGPASTDRGFHTPEGVPSAPSSLKIVNPTLDSLTLEWDPPSHP-- 972
Query: 224 NGVVTGYEILYFRTDKNGEPDNIVRL---VSKTRHSLRNVLPNTSYTIQVRIRNSIGSGP 394
NG++T Y + Y + E +V L +KTR +L+N+ +T Y + S+G G
Sbjct: 973 NGILTEYILQYQPINSTHELGPLVDLKIPANKTRWTLKNLNFSTRYKFYFYAQTSVGPGS 1032
Query: 395 PSESINCTTKEAAPEAPSEIRA 460
TT + A P ++ A
Sbjct: 1033 QITEEAITTVDEAGIPPPDVGA 1054
Score = 32.3 bits (72), Expect = 1.8
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +2
Query: 338 PNTSYTIQVRIRNSIGSGPPSE-SINCTTKEAAPEA-PSEIRAYFIDDKCAKVTWTPPN- 508
P +Y+ +V NSIG PSE S TK A P+ P + + +TW P N
Sbjct: 707 PYVNYSFRVMAENSIGRSMPSEASEQYLTKAAEPDQNPMAVEGLGTEPDNLVITWKPLNG 766
Query: 509 -NSNG 520
SNG
Sbjct: 767 FQSNG 771
>sp|Q7ZW34|CNTN5_BRARE Contactin 5 precursor
Length = 1056
Score = 77.0 bits (188), Expect = 6e-14
Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 7/185 (3%)
Frame = +2
Query: 20 STIISELLIFTQYEFRVILVNEVGY---SPAAYISIRTKEDYPEGYPTQI-VCTPKENQL 187
S + +L + +YEFRV+ N +G SP + ++RTKE P P + + ++L
Sbjct: 688 SAMAVDLNPWVEYEFRVVATNSIGTGDPSPPSR-AVRTKEAVPSVAPANVRGGNGRRHEL 746
Query: 188 ELEWNPPAQGFVNGVVTGYEILYFRTDKNGEPDNIVRLVSKTRHSLRNVL--PNTSYTIQ 361
+ W P ++ + NG GY + + G + +V T + R+ P T + ++
Sbjct: 747 VISWEPVSEEYQNGEGFGYIVAFRVNGTRGWKEKMVTSADSTTYKYRDETFPPLTPFEVR 806
Query: 362 VRIRNSIGSGPPSESINCTTKEAAP-EAPSEIRAYFIDDKCAKVTWTPPNNSNGIVRHYI 538
V + N+ G GP SE + + E P E PSE++A+ + KV W PP+ G + Y
Sbjct: 807 VGVYNNKGDGPFSEVVTVFSAEGEprePPSEVQAFAVSSSEIKVLWKPPSPGLGRPQGYE 866
Query: 539 MTVLK 553
++ K
Sbjct: 867 VSFWK 871
Score = 60.5 bits (145), Expect = 6e-09
Identities = 53/215 (24%), Positives = 103/215 (47%), Gaps = 6/215 (2%)
Frame = +2
Query: 50 TQYEFRVILVNEVGYSP-AAYISIRTKEDYPEGYPTQIVC-TPKENQLELEWNPPAQGFV 223
T +E RV + N G P + +++ + E P P+++ +++++ W PP+ G
Sbjct: 801 TPFEVRVGVYNNKGDGPFSEVVTVFSAEGEprePPSEVQAFAVSSSEIKVLWKPPSPGL- 859
Query: 224 NGVVTGYEILYFRTDKNGEPDNIVR-LVSKTRHSLRNVLPNTSYTIQVRIRNSIGSGPPS 400
G GYE+ +++ + E R L ++T L + NT Y + V+ NS G GP S
Sbjct: 860 -GRPQGYEVSFWKDVEQEELGKKKRTLGNETNMLLSGLDGNTQYLVSVKGFNSAGQGPSS 918
Query: 401 ESINCTTKEAAPEAPSEIRAYFIDDKCAKVTWTP---PNNSNGIVRHYIMTVLKKSHKVT 571
++ +TK+ AP P + + ++W P +N + ++ + ++ L++ +
Sbjct: 919 TAVKISTKKNAPSLPPGNLMWIQEGNNVSLSWDPVKARDNESEVIGYKVL--LRQEGRGH 976
Query: 572 SVQLSATKKSNSYFSHILCELVRSESYEIEVQAVT 676
S Q+ T S ++ L +Y IEV+AV+
Sbjct: 977 S-QVMRTPN-----SAVVLTLPEGGTYIIEVRAVS 1005
>sp|P97603|NEO1_RAT Neogenin precursor
Length = 1377
Score = 77.0 bits (188), Expect = 6e-14
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 8/180 (4%)
Frame = +2
Query: 20 STIISELLIFTQYEFRVILVNEVGYSPAAY-ISIRTKEDYPEGYPTQIVCTPKENQ-LEL 193
S I+ L +T+Y FRV+ N+ G + +++RT D P P + + ++ + +
Sbjct: 562 SYTINGLKKYTEYSFRVVAYNKHGPGVSTQDVAVRTLSDVPSAAPQNLSLEVRNSKSIVI 621
Query: 194 EWNPPAQGFVNGVVTGYEILYFRTDKNGEPDNIVRLVSKTRHSLRNVLPNTSYTIQVRIR 373
W PP+ NG +TGY+I Y + + + V ++ + + T Y +V
Sbjct: 622 HWQPPSSATQNGQITGYKIRYRKASRKSDVTETVVTGTQLSQLIEGLDRGTEYNFRVAAL 681
Query: 374 NSIGSGPPSESINCTTKEA------APEAPSEIRAYFIDDKCAKVTWTPPNNSNGIVRHY 535
G+GP ++ ++ T E+ PE PS + + V+WTPP N N +VR Y
Sbjct: 682 TVNGTGPATDWLSAETFESDLDESRVPEVPSSLHVRPLVTSIV-VSWTPPENQNIVVRGY 740
Score = 57.0 bits (136), Expect = 7e-08
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 9/147 (6%)
Frame = +2
Query: 17 ISTIISELLIFTQYEFRVILVN---EVGYSPAAYISIRTKEDYPEGYPTQIVCTPKENQ- 184
+S +++ L T YEF V++ +S A+ + T E P P + KE +
Sbjct: 882 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGA--TFELVPTSPPKDVTVVSKEGKP 939
Query: 185 --LELEWNPPAQGFVNGVVTGYEILYFRTDKNGE-PDNIVRLVSKTR--HSLRNVLPNTS 349
+ + W PP++ NG +TGY I+Y+ TD N E D ++ V R H ++ + +T
Sbjct: 940 RTIIVNWQPPSEA--NGKITGY-IIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTP 996
Query: 350 YTIQVRIRNSIGSGPPSESINCTTKEA 430
Y +++ RNS G GP SE++ T +A
Sbjct: 997 YYFKIQARNSKGMGPMSEAVQFRTPKA 1023
Score = 48.5 bits (114), Expect = 2e-05
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
Frame = +2
Query: 185 LELEWNPPAQGFVNGVVTGYEILYFRTDKNGEPDNIVRLVSKTRHSLRNVLPNTSYTIQV 364
++L W PA +G Y + Y + E + + +++N++P T Y +V
Sbjct: 424 IKLTWRTPASD-PHGDNLTYSVFYTKEGVARERVENTSQPGEMQVTIQNLMPATVYIFKV 482
Query: 365 RIRNSIGSGPPSESINCTTKEAA--PEAPSEIRAYFIDDKCAKVTWTPPNNSNGIVRHYI 538
+N GSG S + T+ P IRAY VTW P + NG +++Y
Sbjct: 483 MAQNKHGSGESSAPLRVETQPEVQLPGPAPNIRAYATSPTSITVTWETPLSGNGEIQNYK 542
Query: 539 MTVLKKSHKVTSVQLSATKKSNSY 610
+ ++K T + S+SY
Sbjct: 543 LYYMEKG---TDKEQDVDVSSHSY 563
Score = 42.4 bits (98), Expect = 0.002
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
Frame = +2
Query: 17 ISTIISELLIFTQYEFRVILVNEVGYSPAA-YISIRTKED------YPEGYPTQIVCTPK 175
+S +I L T+Y FRV + G PA ++S T E PE P+ + P
Sbjct: 661 LSQLIEGLDRGTEYNFRVAALTVNGTGPATDWLSAETFESDLDESRVPE-VPSSLHVRPL 719
Query: 176 ENQLELEWNPPAQGFVNGVVTGYEILYFRTDKNGEPD-NIVRLVSKTR-HSLRNVLPNTS 349
+ + W PP N VV GY I Y G P +++ K R +++ N+ P++
Sbjct: 720 VTSIVVSWTPPEN--QNIVVRGYAIGY----GIGSPHAQTIKVDYKQRYYTIENLDPSSH 773
Query: 350 YTIQVRIRNSIGSGPP 397
Y I ++ N++G G P
Sbjct: 774 YVITLKAFNNVGEGIP 789
Score = 30.0 bits (66), Expect = 8.7
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +2
Query: 338 PNTSYTIQVRIRNSIGSGPPSESINCTTKEAAPEAPSEIRAYFIDD---KCAKVTWTPPN 508
PNT Y V + S S + + T E P +P + + + V W PP+
Sbjct: 891 PNTLYEFSVMVTKGRRSSTWSMTAHGATFELVPTSPPKDVTVVSKEGKPRTIIVNWQPPS 950
Query: 509 NSNGIVRHYIM 541
+NG + YI+
Sbjct: 951 EANGKITGYII 961
>sp|Q92859|NEO1_HUMAN Neogenin precursor
Length = 1461
Score = 75.9 bits (185), Expect = 1e-13
Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 10/182 (5%)
Frame = +2
Query: 20 STIISELLIFTQYEFRVILVNEVGYSPAAY-ISIRTKEDYPEGYPTQIVCTPKENQ-LEL 193
S I+ L +T+Y FRV+ N+ G + +++RT D P P + + ++ + +
Sbjct: 593 SYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDVPSAAPQNLSLEVRNSKSIMI 652
Query: 194 EWNPPAQGFVNGVVTGYEILYFRTDKNGEPDNIVRLVSKTRHS--LRNVLPNTSYTIQVR 367
W PPA NG +TGY+I Y + + + D LVS T+ S + + T Y +V
Sbjct: 653 HWQPPAPATQNGQITGYKIRYRKASR--KSDVTETLVSGTQLSQLIEGLDRGTEYNFRVA 710
Query: 368 IRNSIGSGPPSESINCTTKEA------APEAPSEIRAYFIDDKCAKVTWTPPNNSNGIVR 529
G+GP ++ ++ T E+ PE PS + + V+WTPP N N +VR
Sbjct: 711 ALTINGTGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIV-VSWTPPENQNIVVR 769
Query: 530 HY 535
Y
Sbjct: 770 GY 771
Score = 57.0 bits (136), Expect = 7e-08
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Frame = +2
Query: 17 ISTIISELLIFTQYEFRVILVNEVGYSPAAYISIRTK-EDYPEGYPTQIVCTPKENQ--- 184
+S +++ L T YEF V++ S + + T E P P + KE +
Sbjct: 913 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKT 972
Query: 185 LELEWNPPAQGFVNGVVTGYEILYFRTDKNGE-PDNIVRLVSKTR--HSLRNVLPNTSYT 355
+ + W PP++ NG +TGY I+Y+ TD N E D ++ V R H ++ + +T Y
Sbjct: 973 IIVNWQPPSEA--NGKITGY-IIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYY 1029
Query: 356 IQVRIRNSIGSGPPSESINCTTKEA 430
+++ RNS G GP SE++ T +A
Sbjct: 1030 FKIQARNSKGMGPMSEAVQFRTPKA 1054
Score = 47.0 bits (110), Expect = 7e-05
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
Frame = +2
Query: 185 LELEWNPPAQGFVNGVVTGYEILYFRTDKNGEPDNIVRLVSKTRHSLRNVLPNTSYTIQV 364
++L W PA +G Y + Y + E + + +++N++P T Y +V
Sbjct: 455 IKLTWRTPASD-PHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRV 513
Query: 365 RIRNSIGSGPPSESINCTTKEAA--PEAPSEIRAYFIDDKCAKVTWTPPNNSNGIVRHYI 538
+N GSG S + T+ P +RAY VTW P + NG +++Y
Sbjct: 514 MAQNKHGSGESSAPLRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYK 573
Query: 539 MTVLKKSHKVTSVQLSATKKSNSY 610
+ ++K T + S+SY
Sbjct: 574 LYYMEKG---TDKEQDVDVSSHSY 594
Score = 33.1 bits (74), Expect = 1.0
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +2
Query: 338 PNTSYTIQVRIRNSIGSGPPSESINCTTKEAAPEAPSEIRAYFIDD---KCAKVTWTPPN 508
PNT Y V + S S + + TT E P +P + + K V W PP+
Sbjct: 922 PNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPS 981
Query: 509 NSNGIVRHYIM 541
+NG + YI+
Sbjct: 982 EANGKITGYII 992
>sp|Q98902|L1CAM_FUGRU Neural cell adhesion molecule L1 precursor (N-CAM L1) (L1-CAM)
Length = 1277
Score = 75.9 bits (185), Expect = 1e-13
Identities = 60/244 (24%), Positives = 104/244 (42%), Gaps = 22/244 (9%)
Frame = +2
Query: 26 IISELLIFTQYEFRVILVNEVGYSPAAYISIR-TKEDYPEGYPTQI-VCTPKENQLELEW 199
I++++ F+ +E +V VN+ G P I + ED P P + V + + W
Sbjct: 788 IVTDVQNFSAFEIKVQAVNKKGLGPEPDPIIGYSGEDVPLEAPLNLGVLLENSTTIRVTW 847
Query: 200 NPPAQGFVNGVVTGYEIL----YFRTDKNGEPDNIVRL---VSKTRHSLRNVLPNTSYTI 358
+ + V G + GY+I + R + EP+NIV + ++ + S+ N+ P Y +
Sbjct: 848 SAVDKETVRGHLLGYKIYLTWGHHRNSRAQEPENIVMVQTGANEEKKSITNLRPYCHYDL 907
Query: 359 QVRIRNSIGSGPPSESINCTTKEAAPEAPSEIRAYFIDDKCAKVTWTPPNNSNGIVRHYI 538
+ NS G GP SE + T E P P ++ + + WTPP+ NGI+ Y
Sbjct: 908 AISAFNSKGEGPLSEKTSFMTPEGVPGPPMSMQMTSPSESEITLHWTPPSKPNGILLGYS 967
Query: 539 MTVLK-------------KSHKVTSVQLSATKKSNSYFSHILCELVRSESYEIEVQAVTI 679
+ K S ++T + L + + Y ++ + IE+ T
Sbjct: 968 LQYRKMQSDDNPLQVVDIASPEITHLTLKGLDRHSHYQFLLMARTAAGKGLSIEILGATT 1027
Query: 680 KEGL 691
EGL
Sbjct: 1028 LEGL 1031
Score = 41.6 bits (96), Expect = 0.003
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 4/155 (2%)
Frame = +2
Query: 47 FTQYEFRVILVNEVGYSPAAYIS--IRTKEDYPEGYPTQIVCTPKE-NQLELEWNPPAQG 217
+ Y FRVI +N+ G S + +S +T D P+ P + + + L + W +
Sbjct: 695 YMSYRFRVIAINDQGKSDPSKLSDLYKTPADAPDSNPEDVRSESTDPDTLVITWEEMDKR 754
Query: 218 FVNGVVTGYEILYFRTDKNGEPDNIVRLVSKTRHSLRNVLPNTSYTIQVRIRNSIGSGP- 394
NG Y +++ R +G PD + +V +++ I+V+ N G GP
Sbjct: 755 NFNGPDFKYLVMWRRVVGSG-PDWHEEYTIAPPFIVTDVQNFSAFEIKVQAVNKKGLGPE 813
Query: 395 PSESINCTTKEAAPEAPSEIRAYFIDDKCAKVTWT 499
P I + ++ EAP + + +VTW+
Sbjct: 814 PDPIIGYSGEDVPLEAPLNLGVLLENSTTIRVTWS 848
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,973,066
Number of Sequences: 369166
Number of extensions: 2113809
Number of successful extensions: 6862
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6662
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)