Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01994
(536 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ER72|SYC_MOUSE Cysteinyl-tRNA synthetase (Cysteine--tR... 52 1e-06
sp|P49589|SYC_HUMAN Cysteinyl-tRNA synthetase (Cysteine--tR... 50 3e-06
sp|P53852|SYC_YEAST Cysteinyl-tRNA synthetase (Cysteine--tR... 44 3e-04
sp|P65074|YY38_MYCBO Hypothetical protein Mb3438c precursor... 34 0.20
sp|O60184|YG49_SCHPO Protein C23E6.09 in chromosome II 30 3.7
sp|P37230|PPARA_RAT Peroxisome proliferator-activated recep... 30 4.9
sp|Q88FT2|SYS_PSEPK Seryl-tRNA synthetase (Serine--tRNA lig... 30 4.9
sp|P0A2I5|PARE_SALTY Topoisomerase IV subunit B >gi|6122976... 29 6.4
sp|P20083|PARE_ECOLI Topoisomerase IV subunit B 29 6.4
sp|Q9ULJ3|ZN295_HUMAN Zinc finger protein 295 (Zinc finger ... 29 8.3
>sp|Q9ER72|SYC_MOUSE Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 831
Score = 51.6 bits (122), Expect = 1e-06
Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 13/153 (8%)
Frame = +1
Query: 85 YIDTLAAFRQSIRALAISKKWTVFLGACDALRDTGLATIGICLQDREDGHAAVGLMPVWT 264
Y+ L+ FR+ +R +A KK L DALRD L +G+ +D E V L+ T
Sbjct: 670 YLQVLSEFREGVRKIAREKKVLEVLQLSDALRDDILPELGVRFEDHEGLPTVVKLVDRDT 729
Query: 265 LXXXXXXXXXXXXXXXXXXXXL-------------EASIDPKVMFLTGPYEGLYSSYDSD 405
L + I P MFL+ + YS +D +
Sbjct: 730 LLKEKEGKKRAEEEKRRKKEEAARKKQEQEAAKLAKMKIPPSEMFLSEVNK--YSKFDEN 787
Query: 406 GVPTHDASGNEISKTKRSXXXXXXVEHQKVFEK 504
G+PTHD G E+SK + +K++++
Sbjct: 788 GLPTHDTEGKELSKGQAKKLKKLFEAQEKLYKE 820
>sp|P49589|SYC_HUMAN Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 748
Score = 50.4 bits (119), Expect = 3e-06
Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 13/153 (8%)
Frame = +1
Query: 85 YIDTLAAFRQSIRALAISKKWTVFLGACDALRDTGLATIGICLQDREDGHAAVGLMPVWT 264
Y+ L+ FR+ +R +A +K L DALRD L +G+ +D E V L+ T
Sbjct: 587 YLQVLSEFREGVRKIAREQKVPEILQLSDALRDNILPELGVRFEDHEGLPTVVKLVDRNT 646
Query: 265 LXXXXXXXXXXXXXXXXXXXXL-------------EASIDPKVMFLTGPYEGLYSSYDSD 405
L + I P MFL+ + YS +D +
Sbjct: 647 LLKEREEKRRVEEEKRKKKEEAARRKQEQEAAKLAKMKIPPSEMFLSETDK--YSKFDEN 704
Query: 406 GVPTHDASGNEISKTKRSXXXXXXVEHQKVFEK 504
G+PTHD G E+SK + +K++++
Sbjct: 705 GLPTHDMEGKELSKGQAKKLKKLFEAQEKLYKE 737
>sp|P53852|SYC_YEAST Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 767
Score = 43.5 bits (101), Expect = 3e-04
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 17/157 (10%)
Frame = +1
Query: 85 YIDTLAAFRQSIRALAISK-KWTVFLGACDALRDTGLATIGICLQDREDGHAAVGLMP-- 255
Y+ L+ FR +R+LAI K + FL D +R+ L + + L DR A + +
Sbjct: 608 YVKCLSTFRDDVRSLAIKKAEPKEFLQLTDKIRNEDLLNLNVALDDRNGQSALIKFLTND 667
Query: 256 ----VWTLXXXXXXXXXXXXXXXXXXXXL----------EASIDPKVMFLTGPYEGLYSS 393
+ L L +A I P+ MF LYS+
Sbjct: 668 EKLEIVKLNEEKHANELAKKQKKLEQQKLREQKENERKQKAQIKPQDMFKDVT---LYSA 724
Query: 394 YDSDGVPTHDASGNEISKTKRSXXXXXXVEHQKVFEK 504
+D G+PT D GN+I+K+ + +K+ E+
Sbjct: 725 WDEQGLPTKDKDGNDITKSMTKKLKKQWEQQKKLHEE 761
>sp|P65074|YY38_MYCBO Hypothetical protein Mb3438c precursor
sp|P65073|YY04_MYCTU Hypothetical protein Rv3404c/MT3512 precursor
Length = 234
Score = 34.3 bits (77), Expect = 0.20
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 201 DGREPGVAQRVARPQ-EHGPLLADRECAYRLAEGSKSVDVILERFpreRLVRH 46
DG++ GV Q +HGP++A RECA + S SV L RE ++ H
Sbjct: 100 DGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIERELVLEH 152
>sp|O60184|YG49_SCHPO Protein C23E6.09 in chromosome II
Length = 1102
Score = 30.0 bits (66), Expect = 3.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 245 PTAACPSSRSCRQIPMVASPVSRSASHAPRNTVHFLL 135
P A+ P + P+ A+ VS SH PR+T+H LL
Sbjct: 30 PNASLPPQTAYYASPLHANSVSLPPSHLPRSTLHPLL 66
>sp|P37230|PPARA_RAT Peroxisome proliferator-activated receptor alpha (PPAR-alpha)
Length = 468
Score = 29.6 bits (65), Expect = 4.9
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = -1
Query: 371 GPVRNITFGSMEASNFFFDSFATGAFLGGCFFSCTSVQTGIRPTAACPSSRSCRQIP 201
G ++ I+ E S+ F SFA +LG C S SV T A+ PSS SC +P
Sbjct: 32 GNIQEISQSLGEESSGSF-SFADYQYLGSCPGSEGSVITDTLSPASSPSSVSCPAVP 87
>sp|Q88FT2|SYS_PSEPK Seryl-tRNA synthetase (Serine--tRNA ligase) (SerRS)
Length = 426
Score = 29.6 bits (65), Expect = 4.9
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 216 LQADPDGREPGVAQRVARPQEHGPLLADRE-CAYRLAEGSKSVDVI 82
LQA+ + R + Q A+ ++ PL+AD E A LA G +D I
Sbjct: 47 LQAERNARSKSIGQAKAKGEDIAPLMADVERMANELAAGKAELDAI 92
>sp|P0A2I5|PARE_SALTY Topoisomerase IV subunit B
sp|P0A2I6|PARE_SALTI Topoisomerase IV subunit B
Length = 630
Score = 29.3 bits (64), Expect = 6.4
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 249 QTHRRVPVLAVLQADPDGREPGVAQRVARPQEHGPLLADRECAYRLAEGSKSVDVIL 79
QT+ + + +P R PG+ RP G + D LA +K VDVIL
Sbjct: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59
>sp|P20083|PARE_ECOLI Topoisomerase IV subunit B
Length = 630
Score = 29.3 bits (64), Expect = 6.4
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 249 QTHRRVPVLAVLQADPDGREPGVAQRVARPQEHGPLLADRECAYRLAEGSKSVDVIL 79
QT+ + + +P R PG+ RP G + D LA +K VDVIL
Sbjct: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59
>sp|Q9ULJ3|ZN295_HUMAN Zinc finger protein 295 (Zinc finger and BTB domain containing
protein 21)
Length = 1066
Score = 28.9 bits (63), Expect = 8.3
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -3
Query: 198 GREPGVAQRVARPQEHGPLLA--DRECAYRLAEGSKSVDVILERFpreRLVRH 46
G +P +VA+P+EH PL + + + Y+ + + +LE+ ERL R+
Sbjct: 694 GEKPLGVNKVAKPKEHAPLASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN 746
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,746,485
Number of Sequences: 369166
Number of extensions: 976307
Number of successful extensions: 3052
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3052
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)