Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01982
(925 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35711|SOX5_HUMAN Transcription factor SOX-5 84 4e-16
sp|P35710|SOX5_MOUSE Transcription factor SOX-5 84 6e-16
sp|P40649|SOX12_XENLA SOX-12 protein (xSOX-12) 80 1e-14
sp|Q04891|SOX13_MOUSE SOX-13 protein 79 1e-14
sp|P40645|SOX6_MOUSE Transcription factor SOX-6 (SOX-LZ) 77 5e-14
sp|P35712|SOX6_HUMAN Transcription factor SOX-6 77 5e-14
sp|Q9UN79|SOX13_HUMAN SOX-13 protein (Type 1 diabetes autoa... 76 1e-13
sp|Q06831|SOX4_MOUSE Transcription factor SOX-4 72 2e-12
sp|Q06945|SOX4_HUMAN Transcription factor SOX-4 72 2e-12
sp|Q91731|SOX11_XENLA Transcription factor SOX-11 (xSOX-11) 72 2e-12
>sp|P35711|SOX5_HUMAN Transcription factor SOX-5
Length = 763
Score = 84.3 bits (207), Expect = 4e-16
Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 3/87 (3%)
Frame = +2
Query: 674 NERKQNSNETMNYN---KSEQPLGLLNARIIRANRPGEIENRTNHVKRPMNAFMVWSREE 844
NE + S+ M++N S+ G+ +RI R +R G N H+KRPMNAFMVW+++E
Sbjct: 513 NEEGKFSHAMMDFNLSGDSDGSAGVSESRIYRESR-GRGSNEP-HIKRPMNAFMVWAKDE 570
Query: 845 RSKILKACPDMHNSNISKLLGKKWKEM 925
R KIL+A PDMHNSNISK+LG +WK M
Sbjct: 571 RRKILQAFPDMHNSNISKILGSRWKAM 597
>sp|P35710|SOX5_MOUSE Transcription factor SOX-5
Length = 763
Score = 84.0 bits (206), Expect = 6e-16
Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 3/87 (3%)
Frame = +2
Query: 674 NERKQNSNETMNYNKS---EQPLGLLNARIIRANRPGEIENRTNHVKRPMNAFMVWSREE 844
NE + S+ M++N S + G+ +RI R +R G N H+KRPMNAFMVW+++E
Sbjct: 513 NEEGKFSHGMMDFNMSGDSDGSAGVSESRIYRESR-GRGSNEP-HIKRPMNAFMVWAKDE 570
Query: 845 RSKILKACPDMHNSNISKLLGKKWKEM 925
R KIL+A PDMHNSNISK+LG +WK M
Sbjct: 571 RRKILQAFPDMHNSNISKILGSRWKAM 597
>sp|P40649|SOX12_XENLA SOX-12 protein (xSOX-12)
Length = 470
Score = 79.7 bits (195), Expect = 1e-14
Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Frame = +2
Query: 638 YNSSVSSEYTEFNERKQNSNETMNYNKSE-QPLGLLNARIIRANRPGEIENRTNHVKRPM 814
+ + S E+ + N RK+ + N + L A ++R + + +R NH+KRPM
Sbjct: 241 HGQNTSPEHCQQNYRKELLDTLPEKNIQDVTSLHHTEASLLRCSMDID-GSRGNHIKRPM 299
Query: 815 NAFMVWSREERSKILKACPDMHNSNISKLLGKKWKEM 925
NAFMVW+++ER KIL+A PDMHNS+ISK+LG +WK M
Sbjct: 300 NAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSM 336
>sp|Q04891|SOX13_MOUSE SOX-13 protein
Length = 985
Score = 79.3 bits (194), Expect = 1e-14
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Frame = +2
Query: 617 NSPITPSYNSSVSSEYTEFNERKQNSNETMNYNKSEQPL--GLLNARIIRANRPGEIENR 790
NSP TP +S + + ER + S PL +L+ + + E N
Sbjct: 344 NSPNTPFRKDLISLDSSPAKERLEES--------CVHPLEEAMLSCDMDGSRHFSESRN- 394
Query: 791 TNHVKRPMNAFMVWSREERSKILKACPDMHNSNISKLLGKKWKEM 925
++H+KRPMNAFMVW+++ER KIL+A PDMHNS+ISK+LG +WK M
Sbjct: 395 SSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSM 439
>sp|P40645|SOX6_MOUSE Transcription factor SOX-6 (SOX-LZ)
Length = 827
Score = 77.4 bits (189), Expect = 5e-14
Identities = 32/43 (74%), Positives = 39/43 (90%)
Frame = +2
Query: 797 HVKRPMNAFMVWSREERSKILKACPDMHNSNISKLLGKKWKEM 925
H+KRPMNAFMVW+++ER KIL+A PDMHNSNISK+LG +WK M
Sbjct: 619 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSM 661
>sp|P35712|SOX6_HUMAN Transcription factor SOX-6
Length = 828
Score = 77.4 bits (189), Expect = 5e-14
Identities = 32/43 (74%), Positives = 39/43 (90%)
Frame = +2
Query: 797 HVKRPMNAFMVWSREERSKILKACPDMHNSNISKLLGKKWKEM 925
H+KRPMNAFMVW+++ER KIL+A PDMHNSNISK+LG +WK M
Sbjct: 620 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSM 662
>sp|Q9UN79|SOX13_HUMAN SOX-13 protein (Type 1 diabetes autoantigen ICA12) (Islet cell
antigen 12)
Length = 889
Score = 76.3 bits (186), Expect = 1e-13
Identities = 31/45 (68%), Positives = 41/45 (91%)
Frame = +2
Query: 791 TNHVKRPMNAFMVWSREERSKILKACPDMHNSNISKLLGKKWKEM 925
++H+KRPMNAFMVW+++ER KIL+A PDMHNS+ISK+LG +WK M
Sbjct: 403 SSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSM 447
>sp|Q06831|SOX4_MOUSE Transcription factor SOX-4
Length = 440
Score = 72.0 bits (175), Expect = 2e-12
Identities = 31/54 (57%), Positives = 41/54 (75%)
Frame = +2
Query: 758 RANRPGEIENRTNHVKRPMNAFMVWSREERSKILKACPDMHNSNISKLLGKKWK 919
+A+ P + + H+KRPMNAFMVWS+ ER KI++ PDMHN+ ISK LGK+WK
Sbjct: 45 KADDPSWCKTPSGHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWK 98
>sp|Q06945|SOX4_HUMAN Transcription factor SOX-4
Length = 474
Score = 72.0 bits (175), Expect = 2e-12
Identities = 31/54 (57%), Positives = 41/54 (75%)
Frame = +2
Query: 758 RANRPGEIENRTNHVKRPMNAFMVWSREERSKILKACPDMHNSNISKLLGKKWK 919
+A+ P + + H+KRPMNAFMVWS+ ER KI++ PDMHN+ ISK LGK+WK
Sbjct: 45 KADDPSWCKTPSGHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWK 98
>sp|Q91731|SOX11_XENLA Transcription factor SOX-11 (xSOX-11)
Length = 382
Score = 72.0 bits (175), Expect = 2e-12
Identities = 31/50 (62%), Positives = 38/50 (76%)
Frame = +2
Query: 770 PGEIENRTNHVKRPMNAFMVWSREERSKILKACPDMHNSNISKLLGKKWK 919
P + T H+KRPMNAFMVWS+ ER KI++ PDMHN+ ISK LGK+WK
Sbjct: 37 PDWCKTATGHIKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWK 86
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,575,713
Number of Sequences: 369166
Number of extensions: 2038546
Number of successful extensions: 6353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6315
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9462723610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)