Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01966
(830 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O86236|YD2A_HAEIN Hypothetical transposase-like protein ... 53 1e-06
sp|O74421|COQ3_SCHPO Hexaprenyldihydroxybenzoate methyltran... 32 1.6
>sp|O86236|YD2A_HAEIN Hypothetical transposase-like protein HI1328.1
Length = 123
Score = 52.8 bits (125), Expect = 1e-06
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Frame = +3
Query: 444 KVFFAEINDRSAMTLIEIITKYVRPGSIIYTDMWKGYCNFAREGFSHETVNHSISFKDID 623
KV+ + + + TL+ II + V+P SI+YTD ++ Y FSH +NHS F +
Sbjct: 4 KVYTVVVPNVQSATLLPIIREKVKPDSIVYTDTFRSYDVLDVSEFSHFRINHSTHFAENH 63
Query: 624 TGVHTNTIEGTWNGLKLLIKPRNR-TKENIEEHLWEFIWRKLNHQ 755
+ N I WN K ++ N KE+ E +L E WR N +
Sbjct: 64 N--YINGIGNFWNHAKRHLQKFNGIPKEHFELYLKECEWRFNNSE 106
>sp|O74421|COQ3_SCHPO Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial
precursor (Dihydroxyhexaprenylbenzoate
methyltransferase) (3,4-dihydroxy-5-hexaprenylbenzoate
methyltransferase) (DHHB methyltransferase) (DHHB-MT)
(DHHB-MTase)
Length = 271
Score = 32.3 bits (72), Expect = 1.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 546 KGYCNFAREGFSHETVNHSISFKDIDTGVHTNTIEGTW 659
K Y R+GF + NHS+S ++D H N + TW
Sbjct: 11 KSYTRLVRQGFLSQQRNHSVSVNEVD---HFNELAKTW 45
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,879,998
Number of Sequences: 369166
Number of extensions: 1744845
Number of successful extensions: 3749
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3749
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)