Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01964
(701 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q97NV7|RECX_STRPN Regulatory protein recX 37 0.066
sp|P59212|RECX_STRR6 Regulatory protein recX 37 0.066
sp|P59210|RECX_STRA5 Regulatory protein recX 33 0.73
sp|P59209|RECX_STRA3 Regulatory protein recX 33 0.73
sp|P48996|DPY27_CAEEL Chromosome condensation protein dpy-2... 32 1.6
sp|Q6FSJ3|UQCR2_CANGA Ubiquinol-cytochrome-c reductase comp... 32 1.6
sp|O02485|YDJ1_CAEEL Hypothetical protein ZK1073.1 in chrom... 32 2.1
sp|Q89A99|LON_BUCBP ATP-dependent protease La 32 2.1
sp|P32767|PDR6_YEAST Pleiotropic drug resistance regulatory... 31 2.8
sp|P29814|NTP1_AMEPV Nucleoside triphosphatase I (Nucleosid... 31 2.8
>sp|Q97NV7|RECX_STRPN Regulatory protein recX
Length = 258
Score = 36.6 bits (83), Expect = 0.066
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +3
Query: 297 FYLAFQKVTEKYIREYLKTQYATIDDKIVTNLINQLNLAKYIRDDQF 437
++L+F+ TEK +REYLK I++ IV+ +I L K+I D Q+
Sbjct: 64 YHLSFKARTEKEVREYLKKY--DINENIVSQVIANLKEEKWINDSQY 108
>sp|P59212|RECX_STRR6 Regulatory protein recX
Length = 258
Score = 36.6 bits (83), Expect = 0.066
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +3
Query: 297 FYLAFQKVTEKYIREYLKTQYATIDDKIVTNLINQLNLAKYIRDDQF 437
++L+F+ TEK +REYLK ID IV+ +I L K+I D Q+
Sbjct: 64 YHLSFKARTEKEVREYLKKY--DIDKNIVSQVIANLKEDKWINDGQY 108
>sp|P59210|RECX_STRA5 Regulatory protein recX
Length = 258
Score = 33.1 bits (74), Expect = 0.73
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 297 FYLAFQKVTEKYIREYLKTQYATIDDKIVTNLINQLNLAKYIRDDQF 437
+Y++F++ TEK + +YL Q ID KI+ +I+ L +I D +
Sbjct: 64 YYISFKQRTEKEVIKYL--QQHDIDSKIIPQIIDNLKSENWINDKNY 108
>sp|P59209|RECX_STRA3 Regulatory protein recX
Length = 258
Score = 33.1 bits (74), Expect = 0.73
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 297 FYLAFQKVTEKYIREYLKTQYATIDDKIVTNLINQLNLAKYIRDDQF 437
+Y++F++ TEK + +YL Q ID KI+ +I+ L +I D +
Sbjct: 64 YYISFKQRTEKEVIKYL--QQHDIDSKIIPQIIDNLKSENWINDKNY 108
>sp|P48996|DPY27_CAEEL Chromosome condensation protein dpy-27 (Dumpty-27 protein)
Length = 1469
Score = 32.0 bits (71), Expect = 1.6
Identities = 22/86 (25%), Positives = 40/86 (46%)
Frame = +3
Query: 279 NCESMNFYLAFQKVTEKYIREYLKTQYATIDDKIVTNLINQLNLAKYIRDDQFNNLPEID 458
N ES + + FQ V + + Y K + T + +T IN+ N +KY DD+ + ++
Sbjct: 160 NYESCSVTIMFQMVKDMPVENYDKYEVLTDNCVCITRTINRENNSKYRIDDKDASQKDVQ 219
Query: 459 NLVQSISLSL*TDESILALLDELSQL 536
L+ + + T L L E+ +
Sbjct: 220 ELLLRAGIDM-THNRFLILQGEVEAI 244
>sp|Q6FSJ3|UQCR2_CANGA Ubiquinol-cytochrome-c reductase complex core protein 2,
mitochondrial precursor
Length = 364
Score = 32.0 bits (71), Expect = 1.6
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +3
Query: 300 YLAFQKVTEKYIREYLKTQYATIDDKIVTNLINQLNLAKYIRDDQFNNLPEIDNLVQS 473
Y + +KV+ ++E+ Y + +I IN+ +L K++ + FN+LP+ NL S
Sbjct: 159 YDSVEKVSIDDLKEFSSKVYTKENIEIEGVGINEADLKKFVTESLFNSLPQGSNLASS 216
>sp|O02485|YDJ1_CAEEL Hypothetical protein ZK1073.1 in chromosome X
Length = 325
Score = 31.6 bits (70), Expect = 2.1
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 3/127 (2%)
Frame = +3
Query: 15 FNRGVGANCLMTSIVFAFLFSSAIMIVVLAHLLTTNVVQTDFCRYFTMSSE-ENKPNNYQ 191
F GVGAN + FA + IM +VL H +T ++C+ M+ EN +
Sbjct: 111 FGEGVGANIICR---FAMGHPNRIMGIVLVHCTSTTAGIIEYCKEKVMNMRLENSIMSDG 167
Query: 192 ILDQYLELTLKFTSNSNNPPDGL--MQALFRNCESMNFYLAFQKVTEKYIREYLKTQYAT 365
D YL L KF S + + L ++A + +AF K T+ + + T+ T
Sbjct: 168 AWD-YL-LAHKFGGESKSRQEYLEELKATLNPKNLSKYLVAFTKRTD--LSSTIGTKLET 223
Query: 366 IDDKIVT 386
+D +VT
Sbjct: 224 VDALLVT 230
>sp|Q89A99|LON_BUCBP ATP-dependent protease La
Length = 780
Score = 31.6 bits (70), Expect = 2.1
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Frame = +3
Query: 183 NYQILDQYLELTLKF-------TSNSNNPPDGLMQAL-------FRNCESMNFYLAFQKV 320
N D YLE+ TSNS N P L+ + + E +N ++ K
Sbjct: 449 NVAFNDHYLEVDYDLSNVMFIATSNSTNIPAPLLDRMEIIRISGYTEFEKLNIAKSYLK- 507
Query: 321 TEKYIREYLKTQYATIDDKIVTNLINQLNLAKYIRDDQFNNL 446
++ R LK+ TI+D +VTN+I Y R+ NL
Sbjct: 508 PKQIKRNALKSNELTIEDSVVTNIIRY-----YTREAGVRNL 544
>sp|P32767|PDR6_YEAST Pleiotropic drug resistance regulatory protein 6
Length = 1081
Score = 31.2 bits (69), Expect = 2.8
Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 17/185 (9%)
Frame = +3
Query: 36 NCLMTSIVFAFLFSSAIMIVVLAHLLTTNVVQTDFCRYFTMSSEENKPNNYQILDQYLEL 215
N L+T+ F+ L AI IV + T +V F +N Q+ D+Y++
Sbjct: 351 NYLVTNDFFSELKELAICIVDFLQINTLSVCNKLFTNI-------QAADNGQVQDEYIQE 403
Query: 216 TLKFTSNSNNPPDGLMQALFRNCESMNFYLAFQKVTEKYIREYLKTQYATIDDKIVTNLI 395
+K N P + F + ++F+L E L+ + +I LI
Sbjct: 404 YIKVLLQMTNFPLTPVLQEFFSVRMVDFWLDLSDAYTNLASETLRPNSIELSTQIFQQLI 463
Query: 396 N------QLNLAKYIRDDQ-----------FNNLPEIDNLVQSISLSL*TDESILALLDE 524
N L++ + I +++ F N + +L QS+ L D L+D
Sbjct: 464 NIYLPKISLSVKQRIIEEEGESTSVNEFEDFRN--AVSDLAQSLWSILGNDNLTNVLIDG 521
Query: 525 LSQLP 539
+ Q+P
Sbjct: 522 MGQMP 526
>sp|P29814|NTP1_AMEPV Nucleoside triphosphatase I (Nucleoside triphosphate
phosphohydrolase I) (NPH I)
Length = 648
Score = 31.2 bits (69), Expect = 2.8
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 26/155 (16%)
Frame = +3
Query: 150 FTMSSEENKPNNYQILDQYLELTLKFTSNSNNPPDGL------MQALFRNCESMNFYLAF 311
F + S K NY LD+ L K +N N L + +F +++N L F
Sbjct: 2 FALDSIVGKHINYA-LDKTQHLPNKIMNNITNTEITLQDYQYFVSRIFIGLKNLNSMLLF 60
Query: 312 ------QKVTEKYIREYLKTQYAT------------IDDKIVT--NLINQLNLAKYIRDD 431
+ +T YI +Y+K + ID + T + I+ + K+I D
Sbjct: 61 WDTGMGKTLTAVYIIKYIKELFPRWIILIFIKKSLYIDPWLNTIRSYISDTSNIKFIYYD 120
Query: 432 QFNNLPEIDNLVQSISLSL*TDESILALLDELSQL 536
++L + +N+ +SI SL +L ++DE+ +L
Sbjct: 121 SSSSLDKFNNIYRSIESSLNKKSRLLIIIDEVHKL 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,845,733
Number of Sequences: 369166
Number of extensions: 1465031
Number of successful extensions: 3560
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3557
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)