Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01948
(762 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZJP4|TONB_HELPJ Protein tonB 38 0.034
sp|Q9PR99|Y046_UREPA Hypothetical protein UU046 37 0.076
sp|Q9PRA1|Y044_UREPA Hypothetical protein UU044 37 0.076
sp|P25823|TUD_DROME Maternal protein tudor 35 0.17
sp|Q6CT09|NOP14_KLULA Probable nucleolar complex protein 14 34 0.38
sp|P45617|PT1_MYCCA Phosphoenolpyruvate-protein phosphotran... 34 0.49
sp|Q58305|FLAD_METJA Putative flagella-related protein D 34 0.49
sp|Q8N895|ZN366_HUMAN Zinc finger protein 366 33 0.64
sp|Q8DRY6|YK70_STRMU Hypothetical UPF0246 protein SMU.2070 33 0.84
sp|O25899|TONB_HELPY Protein tonB 33 1.1
>sp|Q9ZJP4|TONB_HELPJ Protein tonB
Length = 280
Score = 37.7 bits (86), Expect = 0.034
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = +2
Query: 485 KPIKSRKTIPTTKPIPFDLHKPKPKRVPMPELIPEI-----EKVKEIPLTNYSAPDTKSK 649
+P K K P KP P KPKPK P P+ P++ E+ KE P + + K K
Sbjct: 90 EPKKETKPKPKPKPKPKPKPKPKPKPEPKPKPEPKVEEPKKEEPKEEPKKEEAKEEAKEK 149
Query: 650 PVKKDPNI--LLKEADR 694
V K ++KE D+
Sbjct: 150 SVPKQVTTKDIVKEKDK 166
>sp|Q9PR99|Y046_UREPA Hypothetical protein UU046
Length = 791
Score = 36.6 bits (83), Expect = 0.076
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = +2
Query: 449 DYVQFMKNILDNKPIKSRKTIPTTKPIPFDLHKPKPKRVPMPELIPEIEKVKEIPLTNYS 628
DY + +I DN + K IP KP P KP+P+ P P+ IP K +E+
Sbjct: 58 DYQKARPSIKDN----NLKEIPKPKPQP----KPEPQPTPFPDPIPTPPKKEELKKPEIK 109
Query: 629 APDTKSKPVKKDP 667
+ K +K +P
Sbjct: 110 PEEPKKPEIKPEP 122
Score = 31.6 bits (70), Expect = 2.4
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +2
Query: 485 KPIKSRKTIPTTKPIPFDLHKPKPKRVPMPELIPEIEKVKEIPLTNYSAPDTKSKPVKKD 664
KP + +K P KP P PKPK P+P+ P +E + L S P K +P K +
Sbjct: 109 KPEEPKK--PEIKPEPI----PKPKPQPIPQPTPPVETKPKEELLPPSPPPPKEEP-KPE 161
Query: 665 PN 670
P+
Sbjct: 162 PD 163
Score = 29.6 bits (65), Expect = 9.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 476 LDNKPIKSRKTIPTTKPIPFDLHKPKPKRVPMPELIPEIEKVKEIPL 616
++ KP + +P + P P + KP+P P P+ IP V++I L
Sbjct: 138 VETKP--KEELLPPSPPPPKEEPKPEPDPQPQPQQIPNQSTVRKIEL 182
>sp|Q9PRA1|Y044_UREPA Hypothetical protein UU044
Length = 782
Score = 36.6 bits (83), Expect = 0.076
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = +2
Query: 449 DYVQFMKNILDNKPIKSRKTIPTTKPIPFDLHKPKPKRVPMPELIPEIEKVKEIPLTNYS 628
DY + +I D+ + K IP KP P KPKP+ P P+ IP K +E+ +
Sbjct: 58 DYQKARPSIKDS----NLKEIPKPKPQP----KPKPQPTPFPDPIPTPPKKEELKKPDIK 109
Query: 629 APDTKSKPVKKDP 667
+ K +K +P
Sbjct: 110 PEEPKKPEIKPEP 122
Score = 30.4 bits (67), Expect = 5.4
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 2/132 (1%)
Frame = +2
Query: 281 YFATQKLPNMYKFLNFVTDEQILFKWIELEWRKLYDSIFVDNELMSNLKKWLPQLRDYVQ 460
Y +QK P+ + + E + K L+++K SI N K P+ +
Sbjct: 30 YGTSQKSPSSFGIASIDQKENFINK-DNLDYQKARPSIKDSNLKEIPKPKPQPKPKPQPT 88
Query: 461 FMKNILDNKPIKSRKTIPTTKPIPFDLH--KPKPKRVPMPELIPEIEKVKEIPLTNYSAP 634
+ + P K P KP KP+PK P+P+ P IE + L + P
Sbjct: 89 PFPDPIPTPPKKEELKKPDIKPEEPKKPEIKPEPKPEPIPQPAPPIETKPKEELLPPNPP 148
Query: 635 DTKSKPVKKDPN 670
K +P K +PN
Sbjct: 149 PPKEEP-KPEPN 159
>sp|P25823|TUD_DROME Maternal protein tudor
Length = 2515
Score = 35.4 bits (80), Expect = 0.17
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Frame = +2
Query: 470 NILDNKPIKSRKTIP--TTKPIPFDLHKP-----KPKRVPMPEL-IPEIEKVKEI-PLTN 622
N D +P KS+ P T P P L P +P VP P +PE+ +V EI P
Sbjct: 1540 NDKDREPKKSKPAEPARTVAPQPVALKTPSPVPAEPAPVPKPATPVPEVVEVPEINPTVR 1599
Query: 623 YSAPDTKSKPVKKDP 667
+A ++K P ++DP
Sbjct: 1600 EAAAESKQAPAQEDP 1614
>sp|Q6CT09|NOP14_KLULA Probable nucleolar complex protein 14
Length = 837
Score = 34.3 bits (77), Expect = 0.38
Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 9/239 (3%)
Frame = +2
Query: 68 SNINVNEEDKAFIIDVFAESIKYYKIINIVIDRFYETDGRNIFHSDKNIYFVLLFLIIFR 247
S N+++ D +V+ E + +Y + D F E D + HSD FR
Sbjct: 145 SLFNLDDSDGGEDENVYGEKLTHYGKSLSLEDDFDEGD-LGLQHSDSED---------FR 194
Query: 248 LEDIGFENLKGYFATQKL-------PNMYKFLNFVTDEQIL-FKWIELEWRKLYDSIFVD 403
L+ G N+ + + L P K V E I K+ + E +K + + D
Sbjct: 195 LKQAGKRNMADQYGDEGLGDDALQEPARKKTKAEVMQEVIAKSKFYKHERQKAQEKLVQD 254
Query: 404 NELMSNLKKWLPQLRDYVQFMKNILDNKPIKSRKTIPTTKPIPFDLHKPKPKRVPMPELI 583
E + + D+ M + +T+P TKP ++ ++
Sbjct: 255 IEGLDD---------DFESIMSEL---------RTLPKTKPSQTEISTST-------DIA 289
Query: 584 PEIE-KVKEIPLTNYSAPDTKSKPVKKDPNILLKEADRLQPGCAQREISQKTLDKLNQI 757
P+ + KVKE+ L +AP ++K D I + D+ Q+E+ QK LD++N I
Sbjct: 290 PDYDIKVKELVLEKRAAPADRTKT---DEEIKKEYEDK------QKELEQKRLDRMNGI 339
>sp|P45617|PT1_MYCCA Phosphoenolpyruvate-protein phosphotransferase (Phosphotransferase
system, enzyme I)
Length = 573
Score = 33.9 bits (76), Expect = 0.49
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Frame = +2
Query: 26 KDCKSLTIHVDEYFSNINVNE-EDKAFIIDVFAESIKYYKIINIVIDRFYETDGRNIFHS 202
KD SLT + N+ D ++D AE I ++ + +D + F +
Sbjct: 258 KDEPSLTKDKIKKLIEANIGSTNDVQSVLDSGAEGIGLFRTEFLYMDNDHFPTEEEQFEA 317
Query: 203 DKNIYFVLLFLIIFRLEDIGFENLKGYFATQKLPNM---YKFLNFVTDEQILFK 355
K + + L++FR DIG + YF + N Y+ + F D + +FK
Sbjct: 318 YKKVVSQIKHLVVFRTLDIGGDKKLSYFKFDEEMNPFLGYRAIRFTLDRKDIFK 371
>sp|Q58305|FLAD_METJA Putative flagella-related protein D
Length = 342
Score = 33.9 bits (76), Expect = 0.49
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Frame = +2
Query: 476 LDNKPIKSRKTIPTTKPIPFDLHKPKP-----KRVPMPELIPEIEKVKEIPLTNYSAPDT 640
++N PIK + KP+ ++ K K K+ E + EIE K + T+ +T
Sbjct: 123 IENAPIKIKSEEKPEKPVEIEVSKKKETMDTGKKTETEEKVKEIEVPKPVEKTHEKVEET 182
Query: 641 KS-----KPVKKDPNILLKEADRLQP--GCAQREISQKTLDKLNQI 757
K+ K VKK+ + E + P G I ++ +LN I
Sbjct: 183 KTKGEIKKEVKKEVKLKKYELPKESPMGGSFMTPIEEEKEYRLNDI 228
>sp|Q8N895|ZN366_HUMAN Zinc finger protein 366
Length = 744
Score = 33.5 bits (75), Expect = 0.64
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = +2
Query: 509 IPTTKPIPFDLHKPKPKRVPMPELIPEIEKVKEIPLTNYSAPDTKSKPVKKDPNILLKEA 688
+P++ P PF H PK+ P P L+P + +E + +TK K + D N+ + ++
Sbjct: 190 VPSSSPFPFSRHTFLPKQPPEP-LLPRKAEPQE-------SEETKQKVERVDVNVQIDDS 241
Query: 689 DRLQPGCAQREISQKTLDK 745
+ G +Q+ T +K
Sbjct: 242 YYVDVGGSQKRWQCPTCEK 260
>sp|Q8DRY6|YK70_STRMU Hypothetical UPF0246 protein SMU.2070
Length = 242
Score = 33.1 bits (74), Expect = 0.84
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Frame = +2
Query: 320 LNFVTDEQILFKWIELEWRKLYDSIFVDNELMSNLKK------WLPQLRDY---VQFMKN 472
L+F T +I + ++ WRK YD+ +DN + +L + P+LR+ ++F++N
Sbjct: 122 LDFNTKVKIKGESLKNYWRKTYDNFVLDNPSIVSLLSSEFEAVFSPKLRNQLITLRFLEN 181
Query: 473 ILDNKPIKSRKTIPTTKPIPFDLHKPKPKRVPMPELIPE----IEKVKEIPLTNYSAPDT 640
N +KS TI K + + ++I + ++++K I +S D
Sbjct: 182 --QNGQLKSHSTI-----------SKKARGAFLTQVIQQQTKTVDELKTISFNGFSYQDN 228
Query: 641 KSKPVK 658
S+P+K
Sbjct: 229 LSEPLK 234
>sp|O25899|TONB_HELPY Protein tonB
Length = 285
Score = 32.7 bits (73), Expect = 1.1
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +2
Query: 485 KPIKSRKTIPTTKPIPFDLHKPKPKRVPMPELIPEIEKVKEIPLTNYSAPDTKSKPVKKD 664
K + +K + KP P KPKPK P P+ P+ E E + + K +P K++
Sbjct: 87 KKEEPKKEVTKPKPKPKPKPKPKPKPKPEPKPEPKPEPKPEPKVEEVKKEEPKEEPKKEE 146
Query: 665 PNILLKE 685
KE
Sbjct: 147 AKEEAKE 153
Score = 32.0 bits (71), Expect = 1.9
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +2
Query: 485 KPIKSRKTIPTTKPIPFDLHKPKPKRVPMPELIPEIEKVKEIPLTNYSAPDTKSKPVKKD 664
+P K TKP P KPKPK P PE PE K P + K + K++
Sbjct: 85 EPKKEEPKKEVTKPKPKPKPKPKPKPKPKPEPKPE---PKPEPKPEPKVEEVKKEEPKEE 141
Query: 665 P 667
P
Sbjct: 142 P 142
Score = 31.6 bits (70), Expect = 2.4
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +2
Query: 467 KNILDNKPIKSRKTIPTTKPIPFDLHKPKPKRVPMPELIPEI--EKVKEIPLTNYSAPDT 640
K + KP K P KP P +PKP+ P P+ + E+ E+ KE P + +
Sbjct: 93 KEVTKPKPKPKPKPKPKPKPKPEPKPEPKPEPKPEPK-VEEVKKEEPKEEPKKEEAKEEA 151
Query: 641 KSKPVKKDPNI--LLKEADR 694
K K K ++KE D+
Sbjct: 152 KEKSAPKQVTTKDIVKEKDK 171
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,427,965
Number of Sequences: 369166
Number of extensions: 1665460
Number of successful extensions: 6789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6582
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7018522000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)