Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01943
(918 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04202|TCB2_CAEBR Transposable element Tcb2 transposase 60 7e-09
sp|P35072|TCB1_CAEBR Transposable element Tcb1 transposase ... 59 2e-08
sp|P03934|TC1A_CAEEL Transposable element Tc1 transposase 56 2e-07
sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase 50 7e-06
sp|P55614|Y4PE_RHISN Hypothetical 15.5 kDa protein y4pE/y4sA 32 3.3
sp|Q6CUY0|ACN9_KLULA Acetate non-utilizing protein 9, mitoc... 30 7.3
sp|P47171|YJ9H_YEAST Hypothetical 191.7 kDa protein in HOM6... 30 9.5
>sp|Q04202|TCB2_CAEBR Transposable element Tcb2 transposase
Length = 273
Score = 60.5 bits (145), Expect = 7e-09
Identities = 28/68 (41%), Positives = 42/68 (61%)
Frame = +3
Query: 531 STIKYNLILQQDNARPHTAKIVADALCTRNVPVLPWPARSPDLSPIEHAWDDLGRRVRQL 710
ST+ + QQDN HT+K + + R+V +L WP++SPDL+PIEH W+ + R VR +
Sbjct: 166 STVGRAFVFQQDNDPKHTSKHIKEWFRRRHVDLLDWPSQSPDLNPIEHLWEHVERHVRGV 225
Query: 711 YSDIATTK 734
+ A K
Sbjct: 226 RASNANQK 233
>sp|P35072|TCB1_CAEBR Transposable element Tcb1 transposase (Transposable element Barney
transposase)
Length = 273
Score = 58.5 bits (140), Expect = 2e-08
Identities = 27/61 (44%), Positives = 40/61 (65%)
Frame = +3
Query: 552 ILQQDNARPHTAKIVADALCTRNVPVLPWPARSPDLSPIEHAWDDLGRRVRQLYSDIATT 731
+ QQDN HT+ VA+ R V +L WP++SPDL+PIEH W++L RR++ + + A
Sbjct: 173 VFQQDNDPKHTSGHVANWFRRRRVNLLEWPSQSPDLNPIEHMWEELERRLKGVRASNANQ 232
Query: 732 K 734
K
Sbjct: 233 K 233
>sp|P03934|TC1A_CAEEL Transposable element Tc1 transposase
Length = 273
Score = 55.8 bits (133), Expect = 2e-07
Identities = 26/69 (37%), Positives = 40/69 (57%)
Frame = +3
Query: 528 ISTIKYNLILQQDNARPHTAKIVADALCTRNVPVLPWPARSPDLSPIEHAWDDLGRRVRQ 707
+ + + QQDN HT+ V R+V +L WP++SPDL+PIEH W++L RR+
Sbjct: 165 LQNVGRGFVFQQDNDPKHTSLHVRSWFQRRHVHLLDWPSQSPDLNPIEHLWEELERRLGG 224
Query: 708 LYSDIATTK 734
+ + A K
Sbjct: 225 IRASNADAK 233
>sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase
Length = 329
Score = 50.4 bits (119), Expect = 7e-06
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +3
Query: 558 QQDNARPHTAKIVADALCTRNVPVLPWPARSPDLSPIEHAWDDLGRRV---RQLYSDIAT 728
QQDNA H + D + + +L WPARSPDL+PIE+ W L R V + Y +A+
Sbjct: 229 QQDNATIHVSNSTRDYFKLKKINLLDWPARSPDLNPIENLWGILVRIVYAQNKTYPTVAS 288
Query: 729 TKE 737
K+
Sbjct: 289 LKQ 291
>sp|P55614|Y4PE_RHISN Hypothetical 15.5 kDa protein y4pE/y4sA
Length = 135
Score = 31.6 bits (70), Expect = 3.3
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Frame = +3
Query: 618 NVPVLPWPARSPDLSPIEHAW-----DDLGRRVRQLYSDIAT 728
N+ ++ P RSP+L+P+E+ W + L R+ + Y DI T
Sbjct: 66 NITLMFLPPRSPELNPVENVWQFMRDNWLSNRIFKDYDDIVT 107
>sp|Q6CUY0|ACN9_KLULA Acetate non-utilizing protein 9, mitochondrial precursor
Length = 129
Score = 30.4 bits (67), Expect = 7.3
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +3
Query: 651 PDLSPIEHAWDDLGRRVRQLYSDIATTKEQLG*QIKSNENKYHKR----IFKI*FQAWGE 818
P L P++ L RR+ + + ++ T + +LG Q NE K HK ++ + F A +
Sbjct: 28 PLLPPLQ-----LYRRILREHRNLPTMQRELGDQYVKNEFKLHKSTDNPLYIVGFLASWQ 82
Query: 819 DYRNSLTKEE 848
DY + +T+ E
Sbjct: 83 DYLHMITRGE 92
>sp|P47171|YJ9H_YEAST Hypothetical 191.7 kDa protein in HOM6-PMT4 intergenic region
Length = 1648
Score = 30.0 bits (66), Expect = 9.5
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Frame = +1
Query: 40 FLNFNVFFSKHL*NKHVSSATNFLPYTDNFNC--SFITDFPLIFDKLSF--------DKR 189
F +F+ F SK + F+PYTD + C S+ + + IF++ + ++
Sbjct: 399 FCDFDTFASKFIIGSSDKQPEKFIPYTDLYECLKSWSSRYTDIFNQNDYLSSGSNENEEL 458
Query: 190 FQ*NLIFKSDLY 225
FQ N + KS+ +
Sbjct: 459 FQLNALLKSNAF 470
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,405,954
Number of Sequences: 369166
Number of extensions: 1707202
Number of successful extensions: 3485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3485
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9366655350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)