Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01937
(491 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14974|IMB1_HUMAN Importin beta-1 subunit (Karyopherin b... 42 6e-04
sp|P70168|IMB1_MOUSE Importin beta-1 subunit (Karyopherin b... 42 6e-04
sp|P52296|IMB1_RAT Importin beta-1 subunit (Karyopherin bet... 42 6e-04
sp|O18388|IMB_DROME Importin beta subunit (Karyopherin beta... 36 0.056
sp|O15496|PA2GX_HUMAN Group X secretory phospholipase A2 pr... 30 2.3
sp|P55650|Y4SG_RHISN Hypothetical 37.0 kDa protein Y4SG 29 5.2
>sp|Q14974|IMB1_HUMAN Importin beta-1 subunit (Karyopherin beta-1 subunit) (Nuclear
factor P97) (Importin 90)
Length = 876
Score = 42.4 bits (98), Expect = 6e-04
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 175 DIAIGFGKDSLQILDT-DAIRALLARGRNFKNANTKKYAVWALKELSKLRN 324
D+ FGKD L++++ I LL GR K K A WA KEL KL+N
Sbjct: 824 DLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLATWATKELRKLKN 874
Score = 29.3 bits (64), Expect = 5.2
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +2
Query: 17 LQFIIPHMTFIINFMEHIGAQNISSEELIGACCGLVG*ILLVF 145
+ + P + FI++F++HI ++ ++ GL+G + F
Sbjct: 787 VMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAF 829
>sp|P70168|IMB1_MOUSE Importin beta-1 subunit (Karyopherin beta-1 subunit) (Nuclear
factor P97) (Pore targeting complex 97 kDa subunit)
(PTAC97) (SCG)
Length = 876
Score = 42.4 bits (98), Expect = 6e-04
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 175 DIAIGFGKDSLQILDT-DAIRALLARGRNFKNANTKKYAVWALKELSKLRN 324
D+ FGKD L++++ I LL GR K K A WA KEL KL+N
Sbjct: 824 DLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLATWATKELRKLKN 874
Score = 29.3 bits (64), Expect = 5.2
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +2
Query: 17 LQFIIPHMTFIINFMEHIGAQNISSEELIGACCGLVG*ILLVF 145
+ + P + FI++F++HI ++ ++ GL+G + F
Sbjct: 787 VMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAF 829
>sp|P52296|IMB1_RAT Importin beta-1 subunit (Karyopherin beta-1 subunit) (Nuclear
factor P97)
Length = 875
Score = 42.4 bits (98), Expect = 6e-04
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 175 DIAIGFGKDSLQILDT-DAIRALLARGRNFKNANTKKYAVWALKELSKLRN 324
D+ FGKD L++++ I LL GR K K A WA KEL KL+N
Sbjct: 823 DLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLATWATKELRKLKN 873
Score = 29.3 bits (64), Expect = 5.2
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +2
Query: 17 LQFIIPHMTFIINFMEHIGAQNISSEELIGACCGLVG*ILLVF 145
+ + P + FI++F++HI ++ ++ GL+G + F
Sbjct: 786 VMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAF 828
>sp|O18388|IMB_DROME Importin beta subunit (Karyopherin beta-4 subunit) (Protein ketel)
Length = 884
Score = 35.8 bits (81), Expect = 0.056
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 175 DIAIGFGKDSLQILDTDAIRALLARGRNFKNANTKKYAVWALKELSKL 318
D+ FG +LD I LA G+ K TK WA+KE+ K+
Sbjct: 830 DLCTSFGPRLYPLLDDAIITQFLAEGKRSKAQRTKMLCTWAVKEIKKI 877
>sp|O15496|PA2GX_HUMAN Group X secretory phospholipase A2 precursor (Phosphatidylcholine
2-acylhydrolase GX) (GX sPLA2) (sPLA2-X)
Length = 155
Score = 30.4 bits (67), Expect = 2.3
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -2
Query: 295 PKQRISWCWHS*SCVREQGEHEWRLCLGSGASP--SRIRWRCPCKRTMMIAAENK 137
P+ I WC H C + E +G SP R W+C + + AENK
Sbjct: 67 PRDAIDWCCHGHDCCYTRAEE-------AGCSPKTERYSWQCVNQSVLCGPAENK 114
>sp|P55650|Y4SG_RHISN Hypothetical 37.0 kDa protein Y4SG
Length = 336
Score = 29.3 bits (64), Expect = 5.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 258 LQECQHQEIRCLGTQGTLETEKHELIPFPPVLTS 359
LQEC H+ + C G +G L T + + P P TS
Sbjct: 42 LQECGHETLLCEGDKGLLTTLERFMPPDPLARTS 75
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,774,168
Number of Sequences: 369166
Number of extensions: 932763
Number of successful extensions: 2478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2477
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3020232610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)