• TOP
• EST
• Cluster

Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01934
         (150 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5FAD2|PILQ_NEIG1  Type IV pilus biogenesis and competenc...    28   6.7  

>sp|Q5FAD2|PILQ_NEIG1 Type IV pilus biogenesis and competence protein pilQ precursor
           (Outer membrane protein omc)
          Length = 723

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 2   LTREPLHRQLRTMLNLRKLKPIKTRRKRNDEDDLLLFIIYTLIDSS 139
           LT+ PL   +  + NL      KTR K+ D  +LL+FI   +ID++
Sbjct: 677 LTKVPLLGDIPVIGNL-----FKTRGKKTDRRELLIFITPRIIDTA 717

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,148,119
Number of Sequences: 369166
Number of extensions: 151690
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 68,354,980
effective HSP length: 22
effective length of database: 64,290,810
effective search space used: 1735851870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)