Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01922
(821 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q22366|RIM_CAEEL Rab-3 interacting molecule unc-10 (Rim)... 35 0.33
sp|O95835|LATS1_HUMAN Serine/threonine-protein kinase LATS1... 33 0.72
sp|Q8MSX1|ENC_DROME Encore protein 33 0.95
sp|Q9ES18|FOXJ2_MOUSE Forkhead box protein J2 (Fork head ho... 32 1.6
sp|P20584|PPA1_ASPNG Phosphate-repressible acid phosphatase... 32 2.1
sp|P22670|RFX1_HUMAN MHC class II regulatory factor RFX1 (R... 32 2.8
sp|P54258|ATN1_RAT Atrophin-1 (Dentatorubral-pallidoluysian... 32 2.8
sp|Q9P267|MBD5_HUMAN Methyl-CpG-binding domain protein 5 (M... 32 2.8
sp|Q02040|XE7_HUMAN B-lymphocyte antigen precursor (B-lymph... 31 4.7
sp|Q09472|EP300_HUMAN E1A-associated protein p300 31 4.7
>sp|Q22366|RIM_CAEEL Rab-3 interacting molecule unc-10 (Rim) (Uncoordinated protein 10)
Length = 1563
Score = 34.7 bits (78), Expect = 0.33
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Frame = +2
Query: 62 NQYHISNNNDEASDFPVRRSGI----PQAQNSMSRIPPSGMVISQSQQSSGNYIAPWGMP 229
NQ H+ NN+ A++ P +QN ++I + M +Q+QQ S N
Sbjct: 224 NQNHVQNNHQGANNHQQNNRRAMQQQPMSQNQANQI--NQMNQNQNQQQSHNQNMTQNQR 281
Query: 230 N---PQTMFIGNIPRSMPMTPQLQP----QHSSVQQYHHLQSG 337
N PQ N R+M TPQ QP + HH Q G
Sbjct: 282 NQTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQHG 324
>sp|O95835|LATS1_HUMAN Serine/threonine-protein kinase LATS1 (Large tumor suppressor
homolog 1) (WARTS protein kinase) (h-warts)
Length = 1130
Score = 33.5 bits (75), Expect = 0.72
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Frame = +2
Query: 2 IMSLPTNRQP--MPAASPGYFSNQYHISNNNDEASDFPVRRSGIPQAQNSMSRIPPSGMV 175
I S+P RQP M ++S F + N +DF + ++ +P +++R PP
Sbjct: 320 ISSVPVGRQPIIMQSSSKFNFPSGRPGMQNGTGQTDFMIHQNVVPAG--TVNRQPPPPYP 377
Query: 176 ISQSQQSSGNYIAPWGMPNPQTMFIGNIPRSMPMTPQLQPQHSSVQQYHHLQSGPMS-PA 352
++ + S + + G P + G+IP+SM + P +S H+++ +S P
Sbjct: 378 LTAANGQSPSALQTGGSAAPSSYTNGSIPQSM-----MVPNRNS----HNMELYNISVPG 428
Query: 353 VIGNEPGSNSS 385
+ N P S+S+
Sbjct: 429 LQTNWPQSSSA 439
>sp|Q8MSX1|ENC_DROME Encore protein
Length = 1818
Score = 33.1 bits (74), Expect = 0.95
Identities = 23/81 (28%), Positives = 31/81 (38%)
Frame = +2
Query: 89 DEASDFPVRRSGIPQAQNSMSRIPPSGMVISQSQQSSGNYIAPWGMPNPQTMFIGNIPRS 268
D P R S P + S+ PS + +Q+ Q SGN N + N +S
Sbjct: 679 DSTGSTPWRLS--PSSSGSIYHYDPSNLPPNQALQHSGNQYQSQNQGNSSSGGYNNYRKS 736
Query: 269 MPMTPQLQPQHSSVQQYHHLQ 331
P Q Q QQ+H Q
Sbjct: 737 SPHQQQQSQQQQQSQQHHQQQ 757
>sp|Q9ES18|FOXJ2_MOUSE Forkhead box protein J2 (Fork head homologous X)
Length = 565
Score = 32.3 bits (72), Expect = 1.6
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Frame = +2
Query: 62 NQYHISNNNDEASDFPVRRSGIPQAQNS-----MSRIPPSGMVISQSQQSSGNYIAPWGM 226
+Q+HI+N D + F + +PQ S SRI S + S + S N + +G
Sbjct: 450 DQHHIANLCDSLNHFLTQTGHMPQQGGSHRPPAPSRITDSCALTSGKPEPSMNQVNSYGH 509
Query: 227 PNPQTMFIGNIPRSMPMTP-QLQPQHSSVQQYHHLQSGPMSPAVIGNEPGSNSSMHREY 400
P ++ P PM P Q + HH+ P P PG+N + ++
Sbjct: 510 PQASHLY----PGPAPMYPISTQDSAGYNRPAHHMVPRPPVP-----PPGANEEITDDF 559
>sp|P20584|PPA1_ASPNG Phosphate-repressible acid phosphatase precursor (Acid phosphatase
PII)
Length = 436
Score = 32.0 bits (71), Expect = 2.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 104 FPVRRSGIPQAQNSMSRIPPSGMVISQSQQSSGNYIAPWGMPNPQTMFIGN 256
F V SG Q + IP G V++ +++ Y P+ MP P+T +GN
Sbjct: 197 FRVAYSGRVQEALARGEIPDQGEVVANRRRNFTAYQHPFRMPGPETGGVGN 247
>sp|P22670|RFX1_HUMAN MHC class II regulatory factor RFX1 (RFX) (Enhancer factor C)
(EF-C)
Length = 979
Score = 31.6 bits (70), Expect = 2.8
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Frame = +2
Query: 8 SLPTNRQPMPAASPGYFSNQYHISNNNDEASDFPVRRSGIPQAQNSMSRI--PPSGMVIS 181
+LPT R + +A+PG Q ++ + + P +S + QA +S S+ P+G V
Sbjct: 172 ALPTQRLVVQSAAPGSKGGQVSLTVHGTQQVHSPPEQSPV-QANSSSSKTAGAPTGTVPQ 230
Query: 182 QSQQSSGNYIAPWGMPNPQTMFIGNIPRSMPMTP----QLQPQHSSVQQYHHLQSGPM 343
Q Q P P+ P+ P LQP H + Q+ LQ P+
Sbjct: 231 QLQVHGVQQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVA-QEVQQLQQVPV 287
>sp|P54258|ATN1_RAT Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)
Length = 1183
Score = 31.6 bits (70), Expect = 2.8
Identities = 21/78 (26%), Positives = 30/78 (38%)
Frame = +2
Query: 158 PPSGMVISQSQQSSGNYIAPWGMPNPQTMFIGNIPRSMPMTPQLQPQHSSVQQYHHLQSG 337
PP G ++ + G + G + PQ QPQ QQ+HH SG
Sbjct: 445 PPYGRLLPNNNTHPGPFPPTGGQSTAHPPAPAHHHHQQQQQPQPQPQP---QQHHHGNSG 501
Query: 338 PMSPAVIGNEPGSNSSMH 391
P P + S++S H
Sbjct: 502 PPPPGAYPHPLESSNSHH 519
>sp|Q9P267|MBD5_HUMAN Methyl-CpG-binding domain protein 5 (Methyl-CpG binding protein
MBD5)
Length = 1494
Score = 31.6 bits (70), Expect = 2.8
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 11/131 (8%)
Frame = +2
Query: 2 IMSLPTNRQPMPAASPGYFSNQYHISNNNDEA----SDFPVRRSGIPQAQNSMSRIPPSG 169
++ LP+N P+P PG+ ++ H+ A S PV S + + RI S
Sbjct: 400 VVPLPSNL-PLPTVKPGHMNHGSHVQRVQHSASTSLSPSPV-TSPVHMMGTGIGRIEASP 457
Query: 170 MVISQSQQSS--GNYIAPWGMPNPQTMFIGNIPRSMPMT-----PQLQPQHSSVQQYHHL 328
S SS GN++ P P + I PRS T P + S+ HH
Sbjct: 458 QRSRSSSTSSDHGNFMMPPVGPQATSSGIKVPPRSPRSTIGSPRPSMPSSPSTKSDGHHQ 517
Query: 329 QSGPMSPAVIG 361
+P + G
Sbjct: 518 YKDIPNPLIAG 528
>sp|Q02040|XE7_HUMAN B-lymphocyte antigen precursor (B-lymphocyte surface antigen)
(721P) (Protein XE7)
Length = 695
Score = 30.8 bits (68), Expect = 4.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 420 NWDYFLKYSRCIDELLPGSFPITAGDMGPDCKW 322
+WD F + ++ ++E LPG P T G CKW
Sbjct: 126 DWDSFFRDAKDMNETLPGERPDTIHLEGLPCKW 158
>sp|Q09472|EP300_HUMAN E1A-associated protein p300
Length = 2414
Score = 30.8 bits (68), Expect = 4.7
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = +2
Query: 14 PTNRQPMPAASPGYFSNQYHISNN----NDEASDFPVRRSGIPQAQNSMSRIPPSGMVIS 181
P Q P P Q + +N N V+R+G+PQ Q PP G +
Sbjct: 2104 PGMPQGQPGLQPPTMPGQQGVHSNPAMQNMNPMQAGVQRAGLPQQQPQQQLQPPMGGMSP 2163
Query: 182 QSQQSSGNY 208
Q+QQ + N+
Sbjct: 2164 QAQQMNMNH 2172
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,398,774
Number of Sequences: 369166
Number of extensions: 2147552
Number of successful extensions: 5205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5198
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)