Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01918
(250 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9U7E0|ATRX_CAEEL Transcriptional regulator ATRX homolog... 30 1.3
sp|P07250|IMPK_YEAST Inositol polyphosphate multikinase (IP... 28 5.0
sp|O24308|TOP2_PEA DNA topoisomerase 2 (DNA topoisomerase I... 28 5.0
sp|P29973|CNGA1_HUMAN cGMP-gated cation channel alpha 1 (CN... 28 6.5
sp|P32908|SMC1_YEAST Structural maintenance of chromosome 1... 28 6.5
sp|O55207|SYNJ2_RAT Synaptojanin-2 (Synaptic inositol-1,4,5... 28 6.5
sp|Q49179|MVHA_METFE F420-non-reducing hydrogenase subunit ... 28 6.5
sp|P47619|GIDA_MYCGE tRNA uridine 5-carboxymethylaminomethy... 28 8.5
sp|Q9V233|RADA_PYRAB DNA repair and recombination protein radA 28 8.5
>sp|Q9U7E0|ATRX_CAEEL Transcriptional regulator ATRX homolog (X-linked nuclear protein 1)
Length = 1359
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 115 ENDADNLINEVEEPLLKKSKKNSDDVENTQELPVKKSKKK 234
E+D D ++ + LKK K+ + E+ E VKKSKKK
Sbjct: 185 ESDEDEKPSKKSKKGLKKKAKSESESESEDEKEVKKSKKK 224
>sp|P07250|IMPK_YEAST Inositol polyphosphate multikinase (IPMK) (Arginine metabolism
regulation protein III)
Length = 355
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 118 NDADNLINEVEEPLLKKSKKNSDDVENTQELPVKKSKKKQ 237
N+ + + LLK ++ SD +N +PVK K KQ
Sbjct: 74 NEGAKIEQSGDAALLKIDERLSDSTDNLDSIPVKSEKSKQ 113
>sp|O24308|TOP2_PEA DNA topoisomerase 2 (DNA topoisomerase II) (PsTopII)
Length = 1462
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 112 LENDADNLINEVEEPLLKKSKKNSDDVENTQE--LPVKKSKKK 234
LE+D+DN +N+V++ + DD E Q+ PVKK +K
Sbjct: 1280 LESDSDNEVNDVDD--------DDDDFEEVQQKAAPVKKGGRK 1314
>sp|P29973|CNGA1_HUMAN cGMP-gated cation channel alpha 1 (CNG channel alpha 1) (CNG-1)
(CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic
nucleotide gated channel, photoreceptor)
(Cyclic-nucleotide-gated cation channel 1) (Rod
photoreceptor cGMP-gated channel alpha subunit)
Length = 686
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = +1
Query: 121 DADNLINEVEEPLLKKSKKN-----SDDVENTQELPVKKSKKK 234
+ +N N+ +EP KK KK SDD + P KK KKK
Sbjct: 87 NVNNSSNKDQEPEEKKKKKKEKKSKSDDKNENKNDPEKKKKKK 129
>sp|P32908|SMC1_YEAST Structural maintenance of chromosome 1 (DA-box protein SMC1)
Length = 1225
Score = 28.1 bits (61), Expect = 6.5
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 127 DNLINEVEEPLLKKSKKNSDDVENTQELPVKKSKKKQD 240
++LI + +P + + KK DD+ENT++ VK+ + Q+
Sbjct: 749 NDLIEKEIQPKITELKKKLDDLENTKDNLVKEKEALQN 786
>sp|O55207|SYNJ2_RAT Synaptojanin-2 (Synaptic inositol-1,4,5-trisphosphate 5-phosphatase
2)
Length = 1496
Score = 28.1 bits (61), Expect = 6.5
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +1
Query: 112 LENDADNLINEVEEPLLKKSKKNSDDVENTQ--ELPVKKS----KKKQ 237
LE+D D L +E +P++ S+ DD +T P KS KKKQ
Sbjct: 1032 LEDDEDYLADEFGQPVVSDSELGGDDSSDTMSASTPASKSPALAKKKQ 1079
>sp|Q49179|MVHA_METFE F420-non-reducing hydrogenase subunit A (Methyl viologen-reducing
hydrogenase alpha subunit) (MVH subunit A)
Length = 472
Score = 28.1 bits (61), Expect = 6.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 133 LINEVEEPLLKKSKKNSDDVENTQELPV 216
L E +E LLKK+K+N + E+T EL +
Sbjct: 177 LDKETQEKLLKKAKRNVEIAESTLELAI 204
>sp|P47619|GIDA_MYCGE tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
(Glucose-inhibited division protein A)
Length = 612
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 139 NEVEEPLLKKSKKNSDDVENTQELPVKKSKKKQD 240
+ V+E L+KKS + + T EL +KK KKKQ+
Sbjct: 439 DNVQERLIKKSFELGLTDKKTYELFLKKEKKKQE 472
>sp|Q9V233|RADA_PYRAB DNA repair and recombination protein radA
Length = 356
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 118 NDADNLINEVEEPLLKKSKKNSDDVENTQELP 213
ND D L EV E + K KK ++ ++LP
Sbjct: 17 NDVDELELEVGEEVTSKKKKKEKEIRTIEDLP 48
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.296 0.121 0.309
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,754,782
Number of Sequences: 369166
Number of extensions: 276368
Number of successful extensions: 579
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 68,354,980
effective HSP length: 53
effective length of database: 58,564,025
effective search space used: 1698356725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)