Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01912
(363 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P44236|VG42_HAEIN Mu-like prophage FluMu protein gp42 45 7e-05
sp|Q95RW8|OPTIX_DROME Optix protein (Homeobox protein SIX3)... 33 0.27
sp|P37723|OSMB_SALTY Osmotically inducible lipoprotein B pr... 32 0.46
sp|P49918|CDN1C_HUMAN Cyclin-dependent kinase inhibitor 1C ... 32 0.46
sp|P17873|OSMB_ECOLI Osmotically inducible lipoprotein B pr... 32 0.46
sp|P35818|GSPD_PSEAE General secretion pathway protein D pr... 30 2.3
sp|P83794|UCRI_MASLA Cytochrome b6-f complex iron-sulfur su... 30 2.3
sp|P07537|VG12_BPPZA Pre-neck appendage protein (Late prote... 29 3.0
sp|O43150|DDEF2_HUMAN Development and differentiation-enhan... 29 3.0
sp|Q7SIG6|DDEF2_MOUSE Development and differentiation-enhan... 29 3.0
>sp|P44236|VG42_HAEIN Mu-like prophage FluMu protein gp42
Length = 631
Score = 44.7 bits (104), Expect = 7e-05
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Frame = +2
Query: 2 EAIGAVSGATAGAIL---TAPIPIFMPVGALVGGWLGSKLGRGNDIEIGQKFLRSSVVCN 172
EAIG+++GATAGAI+ PIP+ VGA VG +LG LG E+G+ + N
Sbjct: 526 EAIGSIAGATAGAIVGQALIPIPV---VGAAVGSYLGGWLGEWLGSEVGEYLSDPEPIKN 582
Query: 173 DLGKLKSELINETNKII 223
+L + + ++++I
Sbjct: 583 ELNGTINIAVKASDQLI 599
>sp|Q95RW8|OPTIX_DROME Optix protein (Homeobox protein SIX3) (D-Six3)
Length = 487
Score = 32.7 bits (73), Expect = 0.27
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -1
Query: 156 DLRNFCPISISFPLPNLEPNQPPTSAPTGIKIGIGAVSIAPAVAPETAP 10
DL P+ +S PLP P P P G G GA P P P
Sbjct: 293 DLSGSLPLPLSLPLPLASPTHTPPQLPPGYGGGAGAGPGGPLTGPGCLP 341
>sp|P37723|OSMB_SALTY Osmotically inducible lipoprotein B precursor
Length = 72
Score = 32.0 bits (71), Expect = 0.46
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 5 AIGAVSGATAGAILTAPIPIFMPVGALVGGWLGSKLGR 118
AIGA +GA GA+LT + GA VGG +G ++G+
Sbjct: 35 AIGAGAGALGGAVLTDGSTLGTLGGAAVGGVIGHQVGK 72
>sp|P49918|CDN1C_HUMAN Cyclin-dependent kinase inhibitor 1C (Cyclin-dependent kinase
inhibitor p57) (p57KIP2)
Length = 316
Score = 32.0 bits (71), Expect = 0.46
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 138 PISISFPLPNLEPNQPPTSAPTGIKIGIGAVSIAPAVAPETAPIAS 1
P+ P P P P +AP + + A + APA AP AP+A+
Sbjct: 152 PVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAA 197
>sp|P17873|OSMB_ECOLI Osmotically inducible lipoprotein B precursor
Length = 72
Score = 32.0 bits (71), Expect = 0.46
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 5 AIGAVSGATAGAILTAPIPIFMPVGALVGGWLGSKLGR 118
AIGA +GA GA+LT + GA VGG +G ++G+
Sbjct: 35 AIGAGAGALGGAVLTDGSTLGTLGGAAVGGVIGHQVGK 72
>sp|P35818|GSPD_PSEAE General secretion pathway protein D precursor
Length = 658
Score = 29.6 bits (65), Expect = 2.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 135 ISISFPLPNLEPNQPPTSAPTGIKIGIGAVSIAPAVAPETA 13
+SI L +LE N+ P S P G +GIG+ S V +A
Sbjct: 401 LSIGTLLQSLESNKAPESIPDGAIVGIGSSSFGALVTALSA 441
>sp|P83794|UCRI_MASLA Cytochrome b6-f complex iron-sulfur subunit (Rieske iron-sulfur
protein) (Plastohydroquinone:plastocyanin oxidoreductase
iron-sulfur protein) (ISP) (RISP)
Length = 179
Score = 29.6 bits (65), Expect = 2.3
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 5 AIGAVSGATAGAILTAPIPIFMPVGALVGGWLGSKLGRGNDIEIGQKFLRS 157
A G V+G GA+ P G VGG +K GN++++ KFL S
Sbjct: 23 AFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKV-SKFLES 72
>sp|P07537|VG12_BPPZA Pre-neck appendage protein (Late protein GP12)
Length = 854
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 170 NDLGKLKSELINETNKIIEKLL-DSMERFV 256
N++GK+ +ELI E NK++E +L D +E V
Sbjct: 47 NEIGKVTNELIEEWNKVMEWILNDGLEDLV 76
>sp|O43150|DDEF2_HUMAN Development and differentiation-enhancing factor 2 (Pyk2 C-terminus
associated protein) (PAP) (Paxillin-associated protein
with ARFGAP activity 3) (PAG3)
Length = 1006
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 122 NDIEIGQKFLRSSVVCNDLGKLKSELINETNKIIEKLLDSM 244
+D ++G FL+ SV +L L LI N II LDS+
Sbjct: 90 DDPDLGSAFLKFSVFTKELTALFKNLIQNMNNIISFPLDSL 130
>sp|Q7SIG6|DDEF2_MOUSE Development and differentiation-enhancing factor 2 (Pyk2 C-terminus
associated protein) (PAP) (Paxillin-associated protein
with ARFGAP activity 3) (PAG3)
Length = 958
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 122 NDIEIGQKFLRSSVVCNDLGKLKSELINETNKIIEKLLDSM 244
+D ++G FL+ SV +L L LI N II LDS+
Sbjct: 90 DDPDLGSAFLKFSVFTKELTALFKNLIQNMNNIISFPLDSL 130
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,459,957
Number of Sequences: 369166
Number of extensions: 511195
Number of successful extensions: 2531
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2506
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)