Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01911
(261 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O61303|OPSUV_APIME Opsin, ultraviolet-sensitive (AMUVOP)... 31 0.76
sp|P28466|WNT5_DROME Wnt-5 protein precursor (dWnt-5) (dWnt-3) 29 3.8
>sp|O61303|OPSUV_APIME Opsin, ultraviolet-sensitive (AMUVOP) (BUVOPS)
Length = 371
Score = 31.2 bits (69), Expect = 0.76
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 39 GYLHSIL*SYIKFTGEIRIFFAKVM---FCAPMLFVLQY 146
G+L S Y+ T EIRIF A + +C PM+ ++ Y
Sbjct: 192 GFLTSCSFDYLTDTNEIRIFVATIFTFSYCIPMILIIYY 230
>sp|P28466|WNT5_DROME Wnt-5 protein precursor (dWnt-5) (dWnt-3)
Length = 1004
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = -2
Query: 152 SNILQYKKHWSTKHYFCKKNSNFASKF 72
SNI KKH H K NSNF SKF
Sbjct: 205 SNIDDLKKHILFLHNMTKTNSNFESKF 231
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,568,156
Number of Sequences: 369166
Number of extensions: 411227
Number of successful extensions: 723
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)