Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01902
(881 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P28573|SC6A7_RAT Sodium-dependent proline transporter (S... 130 6e-30
sp|Q6PGE7|SC6A7_MOUSE Sodium-dependent proline transporter ... 130 6e-30
sp|Q99884|SC6A7_HUMAN Sodium-dependent proline transporter ... 129 1e-29
sp|Q9UN76|S6A14_HUMAN Sodium- and chloride-dependent neutra... 128 2e-29
sp|Q9JMA9|S6A14_MOUSE Sodium- and chloride-dependent neutra... 128 2e-29
sp|P48067|SC6A9_HUMAN Sodium- and chloride-dependent glycin... 124 5e-28
sp|Q28039|SC6A9_BOVIN Sodium- and chloride-dependent glycin... 124 5e-28
sp|P28571|SC6A9_MOUSE Sodium- and chloride-dependent glycin... 123 8e-28
sp|P28572|SC6A9_RAT Sodium- and chloride-dependent glycine ... 122 1e-27
sp|P58295|SC6A5_RAT Sodium- and chloride-dependent glycine ... 120 5e-27
>sp|P28573|SC6A7_RAT Sodium-dependent proline transporter (Solute carrier family 6
member 7)
Length = 637
Score = 130 bits (326), Expect = 6e-30
Identities = 56/86 (65%), Positives = 68/86 (79%)
Frame = +2
Query: 539 DQKLERGAWGGKIDFIFTCISFAVGLGNVWRFPYLVYKNGGGAFLIPYSLMLFCVGLPIF 718
D +RG W GK+DF+ +CI + VGLGNVWRFPY Y NGGGAFL+PY LML G+P+F
Sbjct: 32 DFAADRGNWTGKLDFLLSCIGYCVGLGNVWRFPYRAYTNGGGAFLVPYFLMLAICGIPLF 91
Query: 719 FLEFAIGQFSSLGPISCWIISPLFKG 796
FLE ++GQFSSLGP++ W ISPLFKG
Sbjct: 92 FLELSLGQFSSLGPLAVWKISPLFKG 117
>sp|Q6PGE7|SC6A7_MOUSE Sodium-dependent proline transporter (Solute carrier family 6
member 7)
Length = 637
Score = 130 bits (326), Expect = 6e-30
Identities = 56/86 (65%), Positives = 68/86 (79%)
Frame = +2
Query: 539 DQKLERGAWGGKIDFIFTCISFAVGLGNVWRFPYLVYKNGGGAFLIPYSLMLFCVGLPIF 718
D +RG W GK+DF+ +CI + VGLGNVWRFPY Y NGGGAFL+PY LML G+P+F
Sbjct: 32 DFAADRGNWTGKLDFLLSCIGYCVGLGNVWRFPYRAYTNGGGAFLVPYFLMLAICGIPLF 91
Query: 719 FLEFAIGQFSSLGPISCWIISPLFKG 796
FLE ++GQFSSLGP++ W ISPLFKG
Sbjct: 92 FLELSLGQFSSLGPLAVWKISPLFKG 117
>sp|Q99884|SC6A7_HUMAN Sodium-dependent proline transporter (Solute carrier family 6
member 7)
Length = 636
Score = 129 bits (324), Expect = 1e-29
Identities = 56/86 (65%), Positives = 67/86 (77%)
Frame = +2
Query: 539 DQKLERGAWGGKIDFIFTCISFAVGLGNVWRFPYLVYKNGGGAFLIPYSLMLFCVGLPIF 718
D RG W GK+DF+ +CI + VGLGNVWRFPY Y NGGGAFL+PY LML G+P+F
Sbjct: 32 DFAAHRGNWTGKLDFLLSCIGYCVGLGNVWRFPYRAYTNGGGAFLVPYFLMLAICGIPLF 91
Query: 719 FLEFAIGQFSSLGPISCWIISPLFKG 796
FLE ++GQFSSLGP++ W ISPLFKG
Sbjct: 92 FLELSLGQFSSLGPLAVWKISPLFKG 117
>sp|Q9UN76|S6A14_HUMAN Sodium- and chloride-dependent neutral and basic amino acid
transporter B(0+) (Amino acid transporter ATB0+) (Solute
carrier family 6 member 14)
Length = 642
Score = 128 bits (322), Expect = 2e-29
Identities = 56/101 (55%), Positives = 73/101 (72%)
Frame = +2
Query: 494 ETIGLEGEVYKITYGDQKLERGAWGGKIDFIFTCISFAVGLGNVWRFPYLVYKNGGGAFL 673
E + E + + D+ +RG W K D++ + I +AVGLGNVWRFPYL Y NGGGAFL
Sbjct: 16 EKVSASSENFHVGENDENQDRGNWSKKSDYLLSMIGYAVGLGNVWRFPYLTYSNGGGAFL 75
Query: 674 IPYSLMLFCVGLPIFFLEFAIGQFSSLGPISCWIISPLFKG 796
IPY++ML GLP+FFLE ++GQF+SLGP+S W I PLF+G
Sbjct: 76 IPYAIMLALAGLPLFFLECSLGQFASLGPVSVWRILPLFQG 116
>sp|Q9JMA9|S6A14_MOUSE Sodium- and chloride-dependent neutral and basic amino acid
transporter B(0+) (Amino acid transporter ATB0+)
(Colonic system B0+ amino acid transporter CATB0+)
(Solute carrier family 6 member 14)
Length = 638
Score = 128 bits (321), Expect = 2e-29
Identities = 56/101 (55%), Positives = 73/101 (72%)
Frame = +2
Query: 494 ETIGLEGEVYKITYGDQKLERGAWGGKIDFIFTCISFAVGLGNVWRFPYLVYKNGGGAFL 673
E + E + + D+ ERG W K D++ + + +AVGLGNVWRFPYL Y NGGGAFL
Sbjct: 16 EKVTASSENFHVGENDENQERGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYTNGGGAFL 75
Query: 674 IPYSLMLFCVGLPIFFLEFAIGQFSSLGPISCWIISPLFKG 796
IPY++ML GLP+FFLE ++GQF+SLGP+S W I PLF+G
Sbjct: 76 IPYAIMLALAGLPLFFLECSLGQFASLGPVSVWRILPLFQG 116
>sp|P48067|SC6A9_HUMAN Sodium- and chloride-dependent glycine transporter 1 (GlyT1)
(GlyT-1) (Solute carrier family 6 member 9)
Length = 692
Score = 124 bits (310), Expect = 5e-28
Identities = 52/89 (58%), Positives = 68/89 (76%)
Frame = +2
Query: 530 TYGDQKLERGAWGGKIDFIFTCISFAVGLGNVWRFPYLVYKNGGGAFLIPYSLMLFCVGL 709
T DQ L+RG WG +I+F+ T + +AVGLGNVWRFPYL Y+NGGGAF+ PY +ML G+
Sbjct: 78 TKRDQNLKRGNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYFIMLIFCGI 137
Query: 710 PIFFLEFAIGQFSSLGPISCWIISPLFKG 796
P+FF+E + GQF+S G + W ISP+FKG
Sbjct: 138 PLFFMELSFGQFASQGCLGVWRISPMFKG 166
>sp|Q28039|SC6A9_BOVIN Sodium- and chloride-dependent glycine transporter 1 (GlyT1)
(GlyT-1) (Solute carrier family 6 member 9)
Length = 638
Score = 124 bits (310), Expect = 5e-28
Identities = 52/89 (58%), Positives = 68/89 (76%)
Frame = +2
Query: 530 TYGDQKLERGAWGGKIDFIFTCISFAVGLGNVWRFPYLVYKNGGGAFLIPYSLMLFCVGL 709
T DQ L+RG WG +I+F+ T + +AVGLGNVWRFPYL Y+NGGGAF+ PY +ML G+
Sbjct: 24 TKKDQNLKRGNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYFIMLIFCGI 83
Query: 710 PIFFLEFAIGQFSSLGPISCWIISPLFKG 796
P+FF+E + GQF+S G + W ISP+FKG
Sbjct: 84 PLFFMELSFGQFASQGCLGVWRISPMFKG 112
>sp|P28571|SC6A9_MOUSE Sodium- and chloride-dependent glycine transporter 1 (GlyT1)
(GlyT-1) (Solute carrier family 6 member 9)
Length = 633
Score = 123 bits (308), Expect = 8e-28
Identities = 52/89 (58%), Positives = 67/89 (75%)
Frame = +2
Query: 530 TYGDQKLERGAWGGKIDFIFTCISFAVGLGNVWRFPYLVYKNGGGAFLIPYSLMLFCVGL 709
T DQ L RG WG +I+F+ T + +AVGLGNVWRFPYL Y+NGGGAF+ PY +ML G+
Sbjct: 19 TKKDQNLTRGNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYFIMLIFCGI 78
Query: 710 PIFFLEFAIGQFSSLGPISCWIISPLFKG 796
P+FF+E + GQF+S G + W ISP+FKG
Sbjct: 79 PLFFMELSFGQFASQGCLGVWRISPMFKG 107
>sp|P28572|SC6A9_RAT Sodium- and chloride-dependent glycine transporter 1 (GlyT1)
(GlyT-1) (Solute carrier family 6 member 9)
Length = 633
Score = 122 bits (307), Expect = 1e-27
Identities = 52/89 (58%), Positives = 67/89 (75%)
Frame = +2
Query: 530 TYGDQKLERGAWGGKIDFIFTCISFAVGLGNVWRFPYLVYKNGGGAFLIPYSLMLFCVGL 709
T DQ L RG WG +I+F+ T + +AVGLGNVWRFPYL Y+NGGGAF+ PY +ML G+
Sbjct: 19 TKKDQNLTRGNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYFIMLVFCGI 78
Query: 710 PIFFLEFAIGQFSSLGPISCWIISPLFKG 796
P+FF+E + GQF+S G + W ISP+FKG
Sbjct: 79 PLFFMELSFGQFASQGCLGVWRISPMFKG 107
>sp|P58295|SC6A5_RAT Sodium- and chloride-dependent glycine transporter 2 (GlyT2)
(GlyT-2) (Solute carrier family 6 member 5)
Length = 799
Score = 120 bits (301), Expect = 5e-27
Identities = 52/87 (59%), Positives = 65/87 (74%)
Frame = +2
Query: 536 GDQKLERGAWGGKIDFIFTCISFAVGLGNVWRFPYLVYKNGGGAFLIPYSLMLFCVGLPI 715
GD+ RG W K+DFI + + +AVGLGNVWRFPYL ++NGGGAFLIPY +ML GLPI
Sbjct: 187 GDENKARGNWSSKLDFILSMVGYAVGLGNVWRFPYLAFQNGGGAFLIPYLMMLALAGLPI 246
Query: 716 FFLEFAIGQFSSLGPISCWIISPLFKG 796
FFLE ++GQF+S GP+S W P +G
Sbjct: 247 FFLEVSLGQFASQGPVSVWKAIPALQG 273
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,915,697
Number of Sequences: 369166
Number of extensions: 2095274
Number of successful extensions: 4433
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4432
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)