Planaria EST Database


DrC_01899

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01899
         (906 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04929|HRPX_PLALO  Histidine-rich glycoprotein precursor        35   0.22 
sp|Q01371|WC1_NEUCR  White collar 1 protein (WC1)                  35   0.29 
sp|P09346|KNOB_PLAFG  Knob-associated histidine-rich protein...    34   0.64 
sp|P13817|KNOB_PLAFA  Knob-associated histidine-rich protein...    34   0.64 
sp|P36417|GBF_DICDI  G-box binding factor (GBF)                    34   0.64 
sp|Q8BUR3|FOXJ3_MOUSE  Forkhead box protein J3                     32   1.9  
sp|P10180|CUT_DROME  Homeobox protein cut                          32   2.4  
sp|Q94VJ5|NU2M_VARBN  NADH-ubiquinone oxidoreductase chain 2...    32   2.4  
sp|Q62563|SRY_MUSSP  Sex-determining region Y protein (Testi...    32   2.4  
sp|P51521|OVO_DROME  Ovo protein (Shaven baby protein)             32   3.2  
>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor
          Length = 351

 Score = 35.4 bits (80), Expect = 0.22
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = +3

Query: 144 EHRDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQEHPDRLHH 317
           E    PHH + +H           H   +H+   H +H   H  PH     HP   HH
Sbjct: 67  EEHHEPHHEEHHH-----------HHPEEHHEPHHEEHHHHHPHPHHHHHHHPPHHHH 113

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = +3

Query: 147 HRDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQEHPDRLHH 317
           H   PHH   +H       +   H    H+A  H  H++ H+  H     H +  HH
Sbjct: 96  HHPHPHHHHHHHPPHHHHHLG--HHHHHHHAAHHHHHEEHHHHHHAAHHHHHEEHHH 150

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 16/57 (28%), Positives = 18/57 (31%)
 Frame = +3

Query: 147 HRDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQEHPDRLHH 317
           H   PHH   +H           H    H+A  H  H   H P H     H    HH
Sbjct: 170 HHHAPHHHHHHHHAPH-------HHHHHHHAPHH-HHHHHHAPHHHHHHHHAPHHHH 218

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
 Frame = +3

Query: 147 HRDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQEH----PDRLH 314
           H +  HH    H           H+   H+ + H  H + H+ PH E   H    P   H
Sbjct: 58  HEEHHHHHPEEH-----------HEP--HHEEHHHHHPEEHHEPHHEEHHHHHPHPHHHH 104

Query: 315 HCQP 326
           H  P
Sbjct: 105 HHHP 108

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 16/57 (28%), Positives = 18/57 (31%)
 Frame = +3

Query: 147 HRDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQEHPDRLHH 317
           H   PHH   +H           H    H+A  H  H   H P H     H    HH
Sbjct: 180 HHHAPHHHHHHHHAPH-------HHHHHHHAPHH-HHHHHHAPHHHHHHHHGHHHHH 228
>sp|Q01371|WC1_NEUCR White collar 1 protein (WC1)
          Length = 1167

 Score = 35.0 bits (79), Expect = 0.29
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 159  PHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQ-HQQRHYPPHQELQEHPDRLHHCQP 326
            P H Q  H   Q  +    H++ + + ++H Q HQQ+H   HQ+LQ+H       QP
Sbjct: 1080 PPHLQGTHLNAQAMQRVHQHKQHQQHQQQHQQQHQQQHQQQHQQLQQHQFNPPQSQP 1136
>sp|P09346|KNOB_PLAFG Knob-associated histidine-rich protein precursor (KAHRP) (KP)
          Length = 634

 Score = 33.9 bits (76), Expect = 0.64
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 228 KHYAKRHVQHQQRHYPPHQELQEHPDRLHHCQPNQQFVQV 347
           +H+   H QHQ +H  PHQ    H    HH + N Q  QV
Sbjct: 62  EHHHHHHHQHQHQHQAPHQAHHHH----HHGEVNHQAPQV 97
>sp|P13817|KNOB_PLAFA Knob-associated histidine-rich protein precursor (KAHRP) (HRPI)
          Length = 473

 Score = 33.9 bits (76), Expect = 0.64
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 228 KHYAKRHVQHQQRHYPPHQELQEHPDRLHHCQPNQQFVQV 347
           +H+   H QHQ +H  PHQ    H    HH + N Q  QV
Sbjct: 62  EHHHHHHHQHQHQHQAPHQAHHHH----HHGEVNHQAPQV 97
>sp|P36417|GBF_DICDI G-box binding factor (GBF)
          Length = 708

 Score = 33.9 bits (76), Expect = 0.64
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 150 RDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQE--HPDRLHH-- 317
           + + HH Q  H  +Q       HQ      ++  QHQQ+H+   Q+ Q+  H  + HH  
Sbjct: 173 QQQQHHQQMQHHQLQQ------HQHQHQQQQQQQQHQQQHHQQQQQQQQQHHQQQQHHQH 226

Query: 318 CQPNQQ 335
            QP QQ
Sbjct: 227 SQPQQQ 232

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 22/81 (27%), Positives = 38/81 (46%)
 Frame = +3

Query: 144 EHRDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQEHPDRLHHCQ 323
           +H  +    Q +HQ +Q  +    HQ+ +H+  +  QHQ +     Q+ Q+   + HH Q
Sbjct: 157 QHHQQMQQQQQHHQQMQQQQH---HQQMQHHQLQQHQHQHQ----QQQQQQQHQQQHHQQ 209

Query: 324 PNQQFVQV*KICV*HQELKHY 386
             QQ  Q       HQ+ +H+
Sbjct: 210 QQQQQQQH------HQQQQHH 224
>sp|Q8BUR3|FOXJ3_MOUSE Forkhead box protein J3
          Length = 623

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +3

Query: 144 EHRDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQEHPDRLHHCQ 323
           +H  RP H  P+ Q                +++    H Q H PPHQ +Q HP+  H   
Sbjct: 393 QHPQRPQHPAPHPQ---------------QHSQLQPPHSQ-HPPPHQHIQHHPNHQHQTL 436

Query: 324 PNQ 332
            +Q
Sbjct: 437 AHQ 439
>sp|P10180|CUT_DROME Homeobox protein cut
          Length = 2175

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 216 HQE*KHYAKRHVQHQQRHYPPHQELQEHPDRLHHCQ 323
           HQ+ +H+ ++H QHQQ+H   HQ+   H    HH Q
Sbjct: 666 HQQQQHHQQQH-QHQQQH---HQQQHLHQQHHHHLQ 697
>sp|Q94VJ5|NU2M_VARBN NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 345

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 21/65 (32%), Positives = 38/65 (58%)
 Frame = -2

Query: 494 LSYLDKLLVRLTMVWSILMFLMWMIMVLWMLHMSFCIML*LLVLYTNLSYLDKLLVRLTM 315
           L  L++  +R TM +S +  L WMI    M+ ++  + L  L+LY  ++ L  L++ LTM
Sbjct: 167 LGGLNQTQLRKTMAFSSIAHLGWMIT---MMTIAPNLTLLNLILYIPMTSLTMLIMHLTM 223

Query: 314 VKSIR 300
            K+++
Sbjct: 224 SKTLQ 228
>sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testis-determining factor)
          Length = 355

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
 Frame = +3

Query: 144 EHRDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPH----QELQEHP--- 302
           +  D  HH Q   Q          HQ+ + +   H Q QQ+ +  H    Q+  +HP   
Sbjct: 221 QFHDHHHHQQQQQQFHDH------HQQKQQFHDHHQQQQQQQFHDHPQQQQQFHDHPQQK 274

Query: 303 ----DRLHHCQPNQQF 338
               D  HH Q  QQF
Sbjct: 275 QQFHDHHHHQQQKQQF 290

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 216 HQE*KHYAKRHVQHQQRHYPPH--QELQEHPDRLHHCQPNQQF 338
           HQ+ K     H Q QQ+ +  H  Q+ Q+  D  HH Q  QQF
Sbjct: 193 HQQQKQQFHDHQQQQQQFHDHHHQQQQQQFHDHHHHQQQQQQF 235
>sp|P51521|OVO_DROME Ovo protein (Shaven baby protein)
          Length = 1351

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 171  QPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQEHPDRLHHCQPNQ 332
            Q +HQ  Q  +    +Q+   YA++  Q QQ+H+   Q+ Q H    HH Q  Q
Sbjct: 923  QSHHQQQQQQQHAAAYQQHNIYAQQQQQQQQQHHQQQQQQQHH--HFHHQQQQQ 974
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,397,118
Number of Sequences: 369166
Number of extensions: 1517520
Number of successful extensions: 4750
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4669
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)