Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01899
(906 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor 35 0.22
sp|Q01371|WC1_NEUCR White collar 1 protein (WC1) 35 0.29
sp|P09346|KNOB_PLAFG Knob-associated histidine-rich protein... 34 0.64
sp|P13817|KNOB_PLAFA Knob-associated histidine-rich protein... 34 0.64
sp|P36417|GBF_DICDI G-box binding factor (GBF) 34 0.64
sp|Q8BUR3|FOXJ3_MOUSE Forkhead box protein J3 32 1.9
sp|P10180|CUT_DROME Homeobox protein cut 32 2.4
sp|Q94VJ5|NU2M_VARBN NADH-ubiquinone oxidoreductase chain 2... 32 2.4
sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testi... 32 2.4
sp|P51521|OVO_DROME Ovo protein (Shaven baby protein) 32 3.2
>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor
Length = 351
Score = 35.4 bits (80), Expect = 0.22
Identities = 16/58 (27%), Positives = 21/58 (36%)
Frame = +3
Query: 144 EHRDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQEHPDRLHH 317
E PHH + +H H +H+ H +H H PH HP HH
Sbjct: 67 EEHHEPHHEEHHH-----------HHPEEHHEPHHEEHHHHHPHPHHHHHHHPPHHHH 113
Score = 30.8 bits (68), Expect = 5.4
Identities = 15/57 (26%), Positives = 22/57 (38%)
Frame = +3
Query: 147 HRDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQEHPDRLHH 317
H PHH +H + H H+A H H++ H+ H H + HH
Sbjct: 96 HHPHPHHHHHHHPPHHHHHLG--HHHHHHHAAHHHHHEEHHHHHHAAHHHHHEEHHH 150
Score = 30.8 bits (68), Expect = 5.4
Identities = 16/57 (28%), Positives = 18/57 (31%)
Frame = +3
Query: 147 HRDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQEHPDRLHH 317
H PHH +H H H+A H H H P H H HH
Sbjct: 170 HHHAPHHHHHHHHAPH-------HHHHHHHAPHH-HHHHHHAPHHHHHHHHAPHHHH 218
Score = 30.4 bits (67), Expect = 7.1
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Frame = +3
Query: 147 HRDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQEH----PDRLH 314
H + HH H H+ H+ + H H + H+ PH E H P H
Sbjct: 58 HEEHHHHHPEEH-----------HEP--HHEEHHHHHPEEHHEPHHEEHHHHHPHPHHHH 104
Query: 315 HCQP 326
H P
Sbjct: 105 HHHP 108
Score = 30.4 bits (67), Expect = 7.1
Identities = 16/57 (28%), Positives = 18/57 (31%)
Frame = +3
Query: 147 HRDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQEHPDRLHH 317
H PHH +H H H+A H H H P H H HH
Sbjct: 180 HHHAPHHHHHHHHAPH-------HHHHHHHAPHH-HHHHHHAPHHHHHHHHGHHHHH 228
>sp|Q01371|WC1_NEUCR White collar 1 protein (WC1)
Length = 1167
Score = 35.0 bits (79), Expect = 0.29
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 159 PHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQ-HQQRHYPPHQELQEHPDRLHHCQP 326
P H Q H Q + H++ + + ++H Q HQQ+H HQ+LQ+H QP
Sbjct: 1080 PPHLQGTHLNAQAMQRVHQHKQHQQHQQQHQQQHQQQHQQQHQQLQQHQFNPPQSQP 1136
>sp|P09346|KNOB_PLAFG Knob-associated histidine-rich protein precursor (KAHRP) (KP)
Length = 634
Score = 33.9 bits (76), Expect = 0.64
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 228 KHYAKRHVQHQQRHYPPHQELQEHPDRLHHCQPNQQFVQV 347
+H+ H QHQ +H PHQ H HH + N Q QV
Sbjct: 62 EHHHHHHHQHQHQHQAPHQAHHHH----HHGEVNHQAPQV 97
>sp|P13817|KNOB_PLAFA Knob-associated histidine-rich protein precursor (KAHRP) (HRPI)
Length = 473
Score = 33.9 bits (76), Expect = 0.64
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 228 KHYAKRHVQHQQRHYPPHQELQEHPDRLHHCQPNQQFVQV 347
+H+ H QHQ +H PHQ H HH + N Q QV
Sbjct: 62 EHHHHHHHQHQHQHQAPHQAHHHH----HHGEVNHQAPQV 97
>sp|P36417|GBF_DICDI G-box binding factor (GBF)
Length = 708
Score = 33.9 bits (76), Expect = 0.64
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 150 RDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQE--HPDRLHH-- 317
+ + HH Q H +Q HQ ++ QHQQ+H+ Q+ Q+ H + HH
Sbjct: 173 QQQQHHQQMQHHQLQQ------HQHQHQQQQQQQQHQQQHHQQQQQQQQQHHQQQQHHQH 226
Query: 318 CQPNQQ 335
QP QQ
Sbjct: 227 SQPQQQ 232
Score = 30.0 bits (66), Expect = 9.3
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +3
Query: 144 EHRDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQEHPDRLHHCQ 323
+H + Q +HQ +Q + HQ+ +H+ + QHQ + Q+ Q+ + HH Q
Sbjct: 157 QHHQQMQQQQQHHQQMQQQQH---HQQMQHHQLQQHQHQHQ----QQQQQQQHQQQHHQQ 209
Query: 324 PNQQFVQV*KICV*HQELKHY 386
QQ Q HQ+ +H+
Sbjct: 210 QQQQQQQH------HQQQQHH 224
>sp|Q8BUR3|FOXJ3_MOUSE Forkhead box protein J3
Length = 623
Score = 32.3 bits (72), Expect = 1.9
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +3
Query: 144 EHRDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQEHPDRLHHCQ 323
+H RP H P+ Q +++ H Q H PPHQ +Q HP+ H
Sbjct: 393 QHPQRPQHPAPHPQ---------------QHSQLQPPHSQ-HPPPHQHIQHHPNHQHQTL 436
Query: 324 PNQ 332
+Q
Sbjct: 437 AHQ 439
>sp|P10180|CUT_DROME Homeobox protein cut
Length = 2175
Score = 32.0 bits (71), Expect = 2.4
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 216 HQE*KHYAKRHVQHQQRHYPPHQELQEHPDRLHHCQ 323
HQ+ +H+ ++H QHQQ+H HQ+ H HH Q
Sbjct: 666 HQQQQHHQQQH-QHQQQH---HQQQHLHQQHHHHLQ 697
>sp|Q94VJ5|NU2M_VARBN NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 345
Score = 32.0 bits (71), Expect = 2.4
Identities = 21/65 (32%), Positives = 38/65 (58%)
Frame = -2
Query: 494 LSYLDKLLVRLTMVWSILMFLMWMIMVLWMLHMSFCIML*LLVLYTNLSYLDKLLVRLTM 315
L L++ +R TM +S + L WMI M+ ++ + L L+LY ++ L L++ LTM
Sbjct: 167 LGGLNQTQLRKTMAFSSIAHLGWMIT---MMTIAPNLTLLNLILYIPMTSLTMLIMHLTM 223
Query: 314 VKSIR 300
K+++
Sbjct: 224 SKTLQ 228
>sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testis-determining factor)
Length = 355
Score = 32.0 bits (71), Expect = 2.4
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Frame = +3
Query: 144 EHRDRPHHCQPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPH----QELQEHP--- 302
+ D HH Q Q HQ+ + + H Q QQ+ + H Q+ +HP
Sbjct: 221 QFHDHHHHQQQQQQFHDH------HQQKQQFHDHHQQQQQQQFHDHPQQQQQFHDHPQQK 274
Query: 303 ----DRLHHCQPNQQF 338
D HH Q QQF
Sbjct: 275 QQFHDHHHHQQQKQQF 290
Score = 31.6 bits (70), Expect = 3.2
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 216 HQE*KHYAKRHVQHQQRHYPPH--QELQEHPDRLHHCQPNQQF 338
HQ+ K H Q QQ+ + H Q+ Q+ D HH Q QQF
Sbjct: 193 HQQQKQQFHDHQQQQQQFHDHHHQQQQQQFHDHHHHQQQQQQF 235
>sp|P51521|OVO_DROME Ovo protein (Shaven baby protein)
Length = 1351
Score = 31.6 bits (70), Expect = 3.2
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 171 QPNHQCVQV*KICV*HQE*KHYAKRHVQHQQRHYPPHQELQEHPDRLHHCQPNQ 332
Q +HQ Q + +Q+ YA++ Q QQ+H+ Q+ Q H HH Q Q
Sbjct: 923 QSHHQQQQQQQHAAAYQQHNIYAQQQQQQQQQHHQQQQQQQHH--HFHHQQQQQ 974
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,397,118
Number of Sequences: 369166
Number of extensions: 1517520
Number of successful extensions: 4750
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4669
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)