Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01898
(256 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9D7W4|TSN17_MOUSE Tetraspanin-17 (Tspan-17) (Transmembr... 48 8e-06
sp|P62080|TSN5_MOUSE Tetraspanin-5 (Tspan-5) (Transmembrane... 44 9e-05
sp|Q68VK5|TSN5_RAT Tetraspanin-5 (Tspan-5) (Transmembrane 4... 44 9e-05
sp|Q96FV3|TSN17_HUMAN Tetraspanin-17 (Tspan-17) (Transmembr... 38 0.006
sp|Q8NG11|TSN14_HUMAN Tetraspanin-14 (Tspan-14) (Transmembr... 29 2.9
sp|Q8QZY6|TSN14_MOUSE Tetraspanin-14 (Tspan-14) (Transmembr... 29 2.9
>sp|Q9D7W4|TSN17_MOUSE Tetraspanin-17 (Tspan-17) (Transmembrane 4 superfamily member 17)
(Tetraspan protein SB134) (F-box only protein 23)
Length = 270
Score = 47.8 bits (112), Expect = 8e-06
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +3
Query: 3 IENNIISVAGALVGIAILQIIVICLAQHLRGDIFAQMAKW 122
+++N+I VAG LVGIA+LQI +CLAQ+L DI A A W
Sbjct: 231 LQDNLIVVAGVLVGIALLQIFGLCLAQNLVSDIKAVKANW 270
>sp|P62080|TSN5_MOUSE Tetraspanin-5 (Tspan-5) (Transmembrane 4 superfamily member 9)
(Tetraspan NET-4)
sp|P62079|TSN5_HUMAN Tetraspanin-5 (Tspan-5) (Transmembrane 4 superfamily member 9)
(Tetraspan NET-4)
Length = 268
Score = 44.3 bits (103), Expect = 9e-05
Identities = 21/40 (52%), Positives = 28/40 (70%)
Frame = +3
Query: 3 IENNIISVAGALVGIAILQIIVICLAQHLRGDIFAQMAKW 122
+++N+ VAG +GIA+LQI ICLAQ+L DI A A W
Sbjct: 229 LQDNLTIVAGIFIGIALLQIFGICLAQNLVSDIEAVRASW 268
>sp|Q68VK5|TSN5_RAT Tetraspanin-5 (Tspan-5) (Transmembrane 4 superfamily member 9)
Length = 268
Score = 44.3 bits (103), Expect = 9e-05
Identities = 21/40 (52%), Positives = 28/40 (70%)
Frame = +3
Query: 3 IENNIISVAGALVGIAILQIIVICLAQHLRGDIFAQMAKW 122
+++N+ VAG +GIA+LQI ICLAQ+L DI A A W
Sbjct: 229 LQDNLTIVAGIFIGIALLQIFGICLAQNLVSDIEAVRASW 268
>sp|Q96FV3|TSN17_HUMAN Tetraspanin-17 (Tspan-17) (Transmembrane 4 superfamily member 17)
(Tetraspan protein SB134) (F-box only protein 23)
Length = 263
Score = 38.1 bits (87), Expect = 0.006
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +3
Query: 3 IENNIISVAGALVGIAILQIIVICLAQHL 89
+++N+I VAG +GIA+LQI ICLAQ+L
Sbjct: 231 LQDNLIVVAGVFMGIALLQIFGICLAQNL 259
>sp|Q8NG11|TSN14_HUMAN Tetraspanin-14 (Tspan-14) (Transmembrane 4 superfamily member 14)
(DC-TM4F2)
Length = 270
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 3 IENNIISVAGALVGIAILQIIVICLAQHLRGDIFAQMA 116
+ NI VAG + I++LQI I LA+ L DI A A
Sbjct: 229 LPRNIYIVAGVFIAISLLQIFGIFLARTLISDIEAVKA 266
>sp|Q8QZY6|TSN14_MOUSE Tetraspanin-14 (Tspan-14) (Transmembrane 4 superfamily member 14)
Length = 270
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 3 IENNIISVAGALVGIAILQIIVICLAQHLRGDIFAQMA 116
+ NI VAG + I++LQI I LA+ L DI A A
Sbjct: 229 LPRNIYIVAGVFIAISLLQIFGIFLARTLISDIEAVKA 266
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,023,048
Number of Sequences: 369166
Number of extensions: 444940
Number of successful extensions: 1064
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 68,354,980
effective HSP length: 55
effective length of database: 58,194,555
effective search space used: 1687642095
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)