Planaria EST Database


DrC_01896

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01896
         (954 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8UVX0|PIWI_BRARE  Piwi protein                                140   4e-33
sp|Q9VKM1|PIWI_DROME  Piwi protein                                131   3e-30
sp|Q9VUQ5|AGO2_DROME  Argonaute 2 protein                         103   7e-22
sp|Q9SJK3|AGOL_ARATH  Argonaute-like protein At2g27880             94   4e-19
sp|Q8CJF9|I2C3_MOUSE  Eukaryotic translation initiation fact...    92   3e-18
sp|Q9H9G7|I2C3_HUMAN  Eukaryotic translation initiation fact...    91   4e-18
sp|Q8CJG1|I2C1_MOUSE  Eukaryotic translation initiation fact...    89   1e-17
sp|Q9UL18|I2C1_HUMAN  Eukaryotic translation initiation fact...    88   3e-17
sp|Q9QZ81|I2C2_RAT  Eukaryotic translation initiation factor...    86   2e-16
sp|Q9UKV8|I2C2_HUMAN  Eukaryotic translation initiation fact...    86   2e-16
>sp|Q8UVX0|PIWI_BRARE Piwi protein
          Length = 858

 Score =  140 bits (354), Expect = 4e-33
 Identities = 94/252 (37%), Positives = 145/252 (57%), Gaps = 9/252 (3%)
 Frame = +1

Query: 136  KMALVFVPDDRV--YAKVKSFT-MSTGLLTQCVTTRNGTNRNDKRRKVVSNKTVMQIFAK 306
            +M +V +P +R   Y  VK +  +     +QCV +R  T    +    V+ K  +Q+  K
Sbjct: 551  QMVVVILPTNRKDKYDCVKKYLCVDCPTPSQCVVSR--TISKPQALMTVATKIALQMNCK 608

Query: 307  FGYDPWTVEIKLRPTMIVGMDTYHNKSS-KKSIQASVFSINSTFTQYMS-FVNQPRGRQE 480
             G + W+VEI LR  MIVG+D YH+ ++ K+SI A V S+N   +++ S  V Q RG QE
Sbjct: 609  MGGELWSVEIPLRQLMIVGIDCYHDTAAGKRSIGAMVASLNQGMSRWFSKCVLQNRG-QE 667

Query: 481  FHETLGKNFNLALEDFKKRYDILPQRILVFRDGVGDNQLQFTKNFEVDAMKPLIENIYKS 660
              + L  +   AL+ + K  + LP RI+V+RDGVGD  LQ   ++EV  +   I+ + + 
Sbjct: 668  IIDALKGSLQGALKAYLKYNNSLPSRIIVYRDGVGDGMLQSVVDYEVPQIMQSIKTMGQD 727

Query: 661  NGFAVPQIIYVIVKKRVGTKLFNRGN----NPNPGTVVDKEIVKPNFYEFFLVSQRTTKG 828
                 P++  V+VKKR+ ++ F R +    NP PGTV+D E+ +P +Y+FF+VSQ    G
Sbjct: 728  YE---PKLSVVVVKKRISSRFFARIDGKIANPPPGTVIDTEVTRPEWYDFFIVSQAVRFG 784

Query: 829  TATPTNYNVLED 864
               PT+YNV+ D
Sbjct: 785  CVAPTHYNVVFD 796
>sp|Q9VKM1|PIWI_DROME Piwi protein
          Length = 843

 Score =  131 bits (329), Expect = 3e-30
 Identities = 88/287 (30%), Positives = 139/287 (48%), Gaps = 9/287 (3%)
 Frame = +1

Query: 94   RCLNDAARSGSGCAKMALVFVPDDRV--YAKVKSFTMSTGLLTQCVTTRNGTNRNDKRRK 267
            R ++D  RS     K+ L  VP+D    Y+ +K      G + + V T+  T +  K R 
Sbjct: 526  RAMDDCVRSDP---KLILCLVPNDNAERYSSIKK----RGYVDRAVPTQVVTLKTTKNRS 578

Query: 268  VVS--NKTVMQIFAKFGYDPWTVEIKLRPTMIVGMDTYHNKSSKKSIQASVFSI-----N 426
            ++S   K  +Q+  K GY PW +E+ L   M +G D   +   +K    ++ +      N
Sbjct: 579  LMSIATKIAIQLNCKLGYTPWMIELPLSGLMTIGFDIAKSTRDRKRAYGALIASMDLQQN 638

Query: 427  STFTQYMSFVNQPRGRQEFHETLGKNFNLALEDFKKRYDILPQRILVFRDGVGDNQLQFT 606
            ST   Y S V +         TL      AL  ++  +  LP RI+ +RDGV    L+  
Sbjct: 639  ST---YFSTVTECSAFDVLANTLWPMIAKALRQYQHEHRKLPSRIVFYRDGVSSGSLKQL 695

Query: 607  KNFEVDAMKPLIENIYKSNGFAVPQIIYVIVKKRVGTKLFNRGNNPNPGTVVDKEIVKPN 786
              FEV  +   ++  Y     + PQ+ Y++V + + T+ F  G NP PGT+VD  I  P 
Sbjct: 696  FEFEVKDIIEKLKTEYARVQLSPPQLAYIVVTRSMNTRFFLNGQNPPPGTIVDDVITLPE 755

Query: 787  FYEFFLVSQRTTKGTATPTNYNVLEDTRLLTKKGTMDPMAPNELQKL 927
             Y+F+LVSQ+  +GT +PT+YNVL  +           ++P ++QKL
Sbjct: 756  RYDFYLVSQQVRQGTVSPTSYNVLYSSM---------GLSPEKMQKL 793
>sp|Q9VUQ5|AGO2_DROME Argonaute 2 protein
          Length = 1214

 Score =  103 bits (257), Expect = 7e-22
 Identities = 84/261 (32%), Positives = 128/261 (49%), Gaps = 18/261 (6%)
 Frame = +1

Query: 139  MALVFVPDDRV-YAKVKSFT-MSTGLLTQCV----TTRNGTNRNDKRRKVVSNKTVMQIF 300
            +A+V +P  R+ Y  +K    +  G+LTQC+      R   N+      +  N  +  I 
Sbjct: 885  LAIVIIPQFRISYDTIKQKAELQHGILTQCIKQFTVERKCNNQTIGNILLKINSKLNGIN 944

Query: 301  AKFGYDPWTVEIKLRPTMIVGMDTYHNKSSKKSIQASVFSINSTFTQYMSFVN-QPRGRQ 477
             K   DP    +K   TM +G D  H    ++ I  SV  + ++   Y +  N Q R ++
Sbjct: 945  HKIKDDPRLPMMK--NTMYIGADVTHPSPDQREIP-SVVGVAASHDPYGASYNMQYRLQR 1001

Query: 478  EFHETLGKNFNLALED---FKKRYDILPQRILVFRDGVGDNQLQFTKNFEVDAMKPLIEN 648
               E +   F++ LE    +K+  +  P  I+ +RDGV D Q    KN E+  +K   + 
Sbjct: 1002 GALEEIEDMFSITLEHLRVYKEYRNAYPDHIIYYRDGVSDGQFPKIKNEELRCIKQACDK 1061

Query: 649  IYKSNGFAVPQIIYVIVKKRVGTKLF--------NRGNNPNPGTVVDKEIVKPNFYEFFL 804
            +        P+I  VIV KR  T+ F        N+ NN +PGTVVD+ IV PN  +FF+
Sbjct: 1062 VG-----CKPKICCVIVVKRHHTRFFPSGDVTTSNKFNNVDPGTVVDRTIVHPNEMQFFM 1116

Query: 805  VSQRTTKGTATPTNYNVLEDT 867
            VS +  +GTA PT YNV+E+T
Sbjct: 1117 VSHQAIQGTAKPTRYNVIENT 1137
>sp|Q9SJK3|AGOL_ARATH Argonaute-like protein At2g27880
          Length = 997

 Score = 94.4 bits (233), Expect = 4e-19
 Identities = 87/303 (28%), Positives = 141/303 (46%), Gaps = 38/303 (12%)
 Frame = +1

Query: 70   TCGPNDVERCLNDAARSGSGCAKMALVFVPD-DRVYAKVKSFTMST-GLLTQCVTTRNGT 243
            +C P  +E  L D  +   G  ++ +V +PD    Y K+K    +  G+++QC   R   
Sbjct: 616  SCPPEHIEEALLDIHKRAPGL-QLLIVILPDVTGSYGKIKRICETELGIVSQCCQPR--- 671

Query: 244  NRNDKRRKVVSNKTVMQIFAKFG------YDPWTVEIKL---RPTMIVGMDTYH---NKS 387
             + +K  K       ++I  K G       D     I L   RPT+I+G D  H    + 
Sbjct: 672  -QVNKLNKQYMENVALKINVKTGGRNTVLNDAIRRNIPLITDRPTIIMGADVTHPQPGED 730

Query: 388  SKKSIQASVFSIN-STFTQYMSFVNQPRGRQEFHETLGK----------NFNLALEDF-- 528
            S  SI A V S++     +Y   V+    R+E  + L K          +  L  E F  
Sbjct: 731  SSPSIAAVVASMDWPEINKYRGLVSAQAHREEIIQDLYKLVQDPQRGLVHSGLIREHFIA 790

Query: 529  -KKRYDILPQRILVFRDGVGDNQLQFTKNFEVDAMKPLIENIYKSNGFAVPQIIYVIVKK 705
             ++    +PQRI+ +RDGV + Q       E+ A++    ++ ++    VP++ +VIV+K
Sbjct: 791  FRRATGQIPQRIIFYRDGVSEGQFSQVLLHEMTAIRKACNSLQENY---VPRVTFVIVQK 847

Query: 706  RVGTKLF----------NRGNNPNPGTVVDKEIVKPNFYEFFLVSQRTTKGTATPTNYNV 855
            R  T+LF          ++  N  PGTVVD +I  PN ++F+L S    +GT+ P +Y+V
Sbjct: 848  RHHTRLFPEQHGNRDMTDKSGNIQPGTVVDTKICHPNEFDFYLNSHAGIQGTSRPAHYHV 907

Query: 856  LED 864
            L D
Sbjct: 908  LLD 910
>sp|Q8CJF9|I2C3_MOUSE Eukaryotic translation initiation factor 2C 3 (eIF2C 3) (eIF-2C 3)
            (Argonaute-3) (Piwi/argonaute family protein meIF2C3)
          Length = 860

 Score = 91.7 bits (226), Expect = 3e-18
 Identities = 80/286 (27%), Positives = 128/286 (44%), Gaps = 18/286 (6%)
 Frame = +1

Query: 76   GPNDVERCLNDAARSGSGCAKMALVFVPDDRVYAKVKSFTMST-GLLTQCVTTRNGTNRN 252
            G + VE        + SG   + ++      VYA+VK    +  G+ TQCV  +N    +
Sbjct: 498  GADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTS 557

Query: 253  DKRRKVVSNKTVMQIFAKFG------YDPWTVEIKLRPTMIVGMDTYH---NKSSKKSIQ 405
             +    +SN   ++I  K G             +  +P + +G D  H       K SI 
Sbjct: 558  PQ---TLSN-LCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIA 613

Query: 406  ASVFSINSTFTQYMSFVNQPRGRQEFHETLGKNFNLALEDFKKRYDILPQRILVFRDGVG 585
            A V S+++  ++Y + V   R RQE  + L       L  F K     P RI+ +RDGV 
Sbjct: 614  AVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVS 673

Query: 586  DNQLQFTKNFEVDAMKPLIENIYKSNGFAVPQIIYVIVKKRVGTKLF--------NRGNN 741
            + Q +    +E+ A++    ++ K      P I Y++V+KR  T+LF         R  N
Sbjct: 674  EGQFRQVLYYELLAIREACISLEKDYQ---PGITYIVVQKRHHTRLFCADRTERVGRSGN 730

Query: 742  PNPGTVVDKEIVKPNFYEFFLVSQRTTKGTATPTNYNVLEDTRLLT 879
               GT VD +I  P  ++F+L S    +GT+ P++Y+VL D    T
Sbjct: 731  IPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNFFT 776
>sp|Q9H9G7|I2C3_HUMAN Eukaryotic translation initiation factor 2C 3 (eIF2C 3) (eIF-2C 3)
            (Argonaute-3)
          Length = 860

 Score = 91.3 bits (225), Expect = 4e-18
 Identities = 80/286 (27%), Positives = 128/286 (44%), Gaps = 18/286 (6%)
 Frame = +1

Query: 76   GPNDVERCLNDAARSGSGCAKMALVFVPDDRVYAKVKSFTMST-GLLTQCVTTRNGTNRN 252
            G + VE        + SG   + ++      VYA+VK    +  G+ TQCV  +N    +
Sbjct: 498  GADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTS 557

Query: 253  DKRRKVVSNKTVMQIFAKFG------YDPWTVEIKLRPTMIVGMDTYH---NKSSKKSIQ 405
             +    +SN   ++I  K G             +  +P + +G D  H       K SI 
Sbjct: 558  PQ---TLSN-LCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIA 613

Query: 406  ASVFSINSTFTQYMSFVNQPRGRQEFHETLGKNFNLALEDFKKRYDILPQRILVFRDGVG 585
            A V S+++  ++Y + V   R RQE  + L       L  F K     P RI+ +RDGV 
Sbjct: 614  AVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVS 673

Query: 586  DNQLQFTKNFEVDAMKPLIENIYKSNGFAVPQIIYVIVKKRVGTKLF--------NRGNN 741
            + Q +    +E+ A++    ++ K      P I Y++V+KR  T+LF         R  N
Sbjct: 674  EGQFRQVLYYELLAIREACISLEKDYQ---PGITYIVVQKRHHTRLFCADRTERVGRSGN 730

Query: 742  PNPGTVVDKEIVKPNFYEFFLVSQRTTKGTATPTNYNVLEDTRLLT 879
               GT VD +I  P  ++F+L S    +GT+ P++Y+VL D    T
Sbjct: 731  IPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFT 776
>sp|Q8CJG1|I2C1_MOUSE Eukaryotic translation initiation factor 2C 1 (eIF2C 1) (eIF-2C 1)
            (Argonaute-1) (Piwi/argonaute family protein meIF2C1)
          Length = 857

 Score = 89.4 bits (220), Expect = 1e-17
 Identities = 81/286 (28%), Positives = 126/286 (44%), Gaps = 18/286 (6%)
 Frame = +1

Query: 76   GPNDVERCLNDAARSGSGCAKMALVFVPDDRVYAKVKSFTMST-GLLTQCVTTRNGTNRN 252
            G + VE        + SG   + ++      VYA+VK    +  G+ TQCV  +N    +
Sbjct: 495  GADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNAVKTS 554

Query: 253  DKRRKVVSNKTVMQIFAKFG------YDPWTVEIKLRPTMIVGMDTYH---NKSSKKSIQ 405
             +    +SN   ++I  K G             +  +P + +G D  H       K SI 
Sbjct: 555  PQ---TLSN-LCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSIT 610

Query: 406  ASVFSINSTFTQYMSFVNQPRGRQEFHETLGKNFNLALEDFKKRYDILPQRILVFRDGVG 585
            A V S+++  ++Y + V   R RQE  E L       L  F K     P RI+ +RDGV 
Sbjct: 611  AVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVP 670

Query: 586  DNQLQFTKNFEVDAMKPLIENIYKSNGFAVPQIIYVIVKKRVGTKLF--------NRGNN 741
            + QL    ++E+ A++     + K      P I Y++V+KR  T+LF         +  N
Sbjct: 671  EGQLPQILHYELLAIRDACIKLEKD---YQPGITYIVVQKRHHTRLFCADKNERIGKSGN 727

Query: 742  PNPGTVVDKEIVKPNFYEFFLVSQRTTKGTATPTNYNVLEDTRLLT 879
               GT VD  I  P  ++F+L S    +GT+ P++Y VL D    T
Sbjct: 728  IPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFT 773
>sp|Q9UL18|I2C1_HUMAN Eukaryotic translation initiation factor 2C 1 (eIF2C 1) (eIF-2C 1)
            (Argonaute-1) (Putative RNA-binding protein Q99)
          Length = 857

 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 81/286 (28%), Positives = 126/286 (44%), Gaps = 18/286 (6%)
 Frame = +1

Query: 76   GPNDVERCLNDAARSGSGCAKMALVFVPDDRVYAKVKSFTMST-GLLTQCVTTRNGTNRN 252
            G + VE        + SG   + ++      VYA+VK    +  G+ TQCV  +N    +
Sbjct: 495  GADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTS 554

Query: 253  DKRRKVVSNKTVMQIFAKFG------YDPWTVEIKLRPTMIVGMDTYH---NKSSKKSIQ 405
             +    +SN   ++I  K G             +  +P + +G D  H       K SI 
Sbjct: 555  PQ---TLSN-LCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSIT 610

Query: 406  ASVFSINSTFTQYMSFVNQPRGRQEFHETLGKNFNLALEDFKKRYDILPQRILVFRDGVG 585
            A V S+++  ++Y + V   R RQE  E L       L  F K     P RI+ +RDGV 
Sbjct: 611  AVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVP 670

Query: 586  DNQLQFTKNFEVDAMKPLIENIYKSNGFAVPQIIYVIVKKRVGTKLF--------NRGNN 741
            + QL    ++E+ A++     + K      P I Y++V+KR  T+LF         +  N
Sbjct: 671  EGQLPQILHYELLAIRDACIKLEKD---YQPGITYIVVQKRHHTRLFCADKNERIGKSGN 727

Query: 742  PNPGTVVDKEIVKPNFYEFFLVSQRTTKGTATPTNYNVLEDTRLLT 879
               GT VD  I  P  ++F+L S    +GT+ P++Y VL D    T
Sbjct: 728  IPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFT 773
>sp|Q9QZ81|I2C2_RAT Eukaryotic translation initiation factor 2C 2 (eIF2C 2) (eIF-2C 2)
            (Argonaute-2) (Golgi ER protein 95 kDa) (GERp95)
          Length = 860

 Score = 85.9 bits (211), Expect = 2e-16
 Identities = 77/281 (27%), Positives = 122/281 (43%), Gaps = 18/281 (6%)
 Frame = +1

Query: 76   GPNDVERCLNDAARSGSGCAKMALVFVPDDRVYAKVKSFTMST-GLLTQCVTTRNGTNRN 252
            G + VE        + +G   + ++      VYA+VK    +  G+ TQCV  +N     
Sbjct: 498  GADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTT 557

Query: 253  DKRRKVVSNKT------VMQIFAKFGYDPWTVEIKLRPTMIVGMDTYH---NKSSKKSIQ 405
             +    +  K       V  I    G  P    +  +P + +G D  H       K SI 
Sbjct: 558  PQTLSNLCLKINVKLGGVNNILLPQGRPP----VFQQPVIFLGADVTHPPAGDGKKPSIA 613

Query: 406  ASVFSINSTFTQYMSFVNQPRGRQEFHETLGKNFNLALEDFKKRYDILPQRILVFRDGVG 585
            A V S+++   +Y + V   + RQE  + L       L  F K     P RI+ +RDGV 
Sbjct: 614  AVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVS 673

Query: 586  DNQLQFTKNFEVDAMKPLIENIYKSNGFAVPQIIYVIVKKRVGTKLF--------NRGNN 741
            + Q Q   + E+ A++   E   K      P I +++V+KR  T+LF         +  N
Sbjct: 674  EGQFQQVLHHELLAIR---EACIKLEKEYQPGITFIVVQKRHHTRLFCTDKNERVGKSGN 730

Query: 742  PNPGTVVDKEIVKPNFYEFFLVSQRTTKGTATPTNYNVLED 864
               GT VD +I  P  ++F+L S    +GT+ P++Y+VL D
Sbjct: 731  IPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWD 771
>sp|Q9UKV8|I2C2_HUMAN Eukaryotic translation initiation factor 2C 2 (eIF2C 2) (eIF-2C 2)
            (Argonaute-2) (Slicer protein) (PAZ Piwi domain protein)
            (PPD)
          Length = 851

 Score = 85.9 bits (211), Expect = 2e-16
 Identities = 77/281 (27%), Positives = 122/281 (43%), Gaps = 18/281 (6%)
 Frame = +1

Query: 76   GPNDVERCLNDAARSGSGCAKMALVFVPDDRVYAKVKSFTMST-GLLTQCVTTRNGTNRN 252
            G + VE        + +G   + ++      VYA+VK    +  G+ TQCV  +N     
Sbjct: 489  GADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTT 548

Query: 253  DKRRKVVSNKT------VMQIFAKFGYDPWTVEIKLRPTMIVGMDTYH---NKSSKKSIQ 405
             +    +  K       V  I    G  P    +  +P + +G D  H       K SI 
Sbjct: 549  PQTLSNLCLKINVKLGGVNNILLPQGRPP----VFQQPVIFLGADVTHPPAGDGKKPSIA 604

Query: 406  ASVFSINSTFTQYMSFVNQPRGRQEFHETLGKNFNLALEDFKKRYDILPQRILVFRDGVG 585
            A V S+++   +Y + V   + RQE  + L       L  F K     P RI+ +RDGV 
Sbjct: 605  AVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVS 664

Query: 586  DNQLQFTKNFEVDAMKPLIENIYKSNGFAVPQIIYVIVKKRVGTKLF--------NRGNN 741
            + Q Q   + E+ A++   E   K      P I +++V+KR  T+LF         +  N
Sbjct: 665  EGQFQQVLHHELLAIR---EACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGN 721

Query: 742  PNPGTVVDKEIVKPNFYEFFLVSQRTTKGTATPTNYNVLED 864
               GT VD +I  P  ++F+L S    +GT+ P++Y+VL D
Sbjct: 722  IPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWD 762
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,529,449
Number of Sequences: 369166
Number of extensions: 2379660
Number of successful extensions: 5712
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5682
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 9856975370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)