Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01880
(247 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38636|ATX1_YEAST Metal homeostasis factor ATX1 53 2e-07
sp|O08997|ATOX1_MOUSE Copper transport protein ATOX1 (Metal... 50 2e-06
sp|Q9TT99|ATOX1_CANFA Copper transport protein ATOX1 (Metal... 50 2e-06
sp|O00244|ATOX1_HUMAN Copper transport protein ATOX1 (Metal... 49 5e-06
sp|Q9XT28|ATOX1_SHEEP Copper transport protein ATOX1 (Metal... 48 8e-06
sp|Q9WUC4|ATOX1_RAT Copper transport protein ATOX1 (Metal t... 47 1e-05
sp|Q9JK72|CCS_RAT Copper chaperone for superoxide dismutase... 42 4e-04
sp|O14618|CCS_HUMAN Copper chaperone for superoxide dismuta... 42 6e-04
sp|Q9WU84|CCS_MOUSE Copper chaperone for superoxide dismuta... 39 0.003
sp|Q6PWT7|CCS_PIG Copper chaperone for superoxide dismutase... 38 0.006
>sp|P38636|ATX1_YEAST Metal homeostasis factor ATX1
Length = 73
Score = 52.8 bits (125), Expect = 2e-07
Identities = 27/61 (44%), Positives = 36/61 (59%)
Frame = +1
Query: 10 YKFNVAMTCEACANAAKKVLGKLGNAVISVETDVASKTVTVVSTLGRDEIKAALEKTGKE 189
Y+FNV MTC C+ A KVL KL V ++ + + V V +TL D I ++KTGKE
Sbjct: 7 YQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKE 66
Query: 190 V 192
V
Sbjct: 67 V 67
>sp|O08997|ATOX1_MOUSE Copper transport protein ATOX1 (Metal transport protein ATX1)
Length = 68
Score = 50.1 bits (118), Expect = 2e-06
Identities = 26/62 (41%), Positives = 37/62 (59%)
Frame = +1
Query: 10 YKFNVAMTCEACANAAKKVLGKLGNAVISVETDVASKTVTVVSTLGRDEIKAALEKTGKE 189
++F+V MTCE CA A +VL KLG ++ D+ +K V + S D + A L KTGK
Sbjct: 4 HEFSVDMTCEGCAEAVSRVLNKLGGVEFNI--DLPNKKVCIDSEHSSDTLLATLNKTGKA 61
Query: 190 VT 195
V+
Sbjct: 62 VS 63
>sp|Q9TT99|ATOX1_CANFA Copper transport protein ATOX1 (Metal transport protein ATX1)
Length = 68
Score = 50.1 bits (118), Expect = 2e-06
Identities = 26/62 (41%), Positives = 38/62 (61%)
Frame = +1
Query: 10 YKFNVAMTCEACANAAKKVLGKLGNAVISVETDVASKTVTVVSTLGRDEIKAALEKTGKE 189
++F+V MTCE C+NA +VL KLG + + D+ +K V + S D + LEKTGK
Sbjct: 4 HEFSVDMTCEGCSNAVSRVLNKLGG--VEFDIDLPNKKVCINSEHSVDILLETLEKTGKA 61
Query: 190 VT 195
V+
Sbjct: 62 VS 63
>sp|O00244|ATOX1_HUMAN Copper transport protein ATOX1 (Metal transport protein ATX1)
Length = 68
Score = 48.5 bits (114), Expect = 5e-06
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +1
Query: 10 YKFNVAMTCEACANAAKKVLGKLGNAVISVETDVASKTVTVVSTLGRDEIKAALEKTGKE 189
++F+V MTC CA A +VL KLG + + D+ +K V + S D + A L+KTGK
Sbjct: 4 HEFSVDMTCGGCAEAVSRVLNKLGG--VKYDIDLPNKKVCIESEHSMDTLLATLKKTGKT 61
Query: 190 VT 195
V+
Sbjct: 62 VS 63
>sp|Q9XT28|ATOX1_SHEEP Copper transport protein ATOX1 (Metal transport protein ATX1)
(Copper chaperone SAH)
Length = 68
Score = 47.8 bits (112), Expect = 8e-06
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +1
Query: 10 YKFNVAMTCEACANAAKKVLGKLGNAVISVETDVASKTVTVVSTLGRDEIKAALEKTGKE 189
++F+V MTCE C+NA +VL KLG + + D+ +K V + S D + L KTGK
Sbjct: 4 HEFSVDMTCEGCSNAVTRVLNKLGG--VQFDIDLPNKKVCINSEHSVDTLLETLGKTGKA 61
Query: 190 VT 195
V+
Sbjct: 62 VS 63
>sp|Q9WUC4|ATOX1_RAT Copper transport protein ATOX1 (Metal transport protein ATX1)
Length = 68
Score = 47.0 bits (110), Expect = 1e-05
Identities = 25/62 (40%), Positives = 36/62 (58%)
Frame = +1
Query: 10 YKFNVAMTCEACANAAKKVLGKLGNAVISVETDVASKTVTVVSTLGRDEIKAALEKTGKE 189
++F+V MTC CA A +VL KLG ++ D+ +K V + S D + A L KTGK
Sbjct: 4 HEFSVDMTCGGCAEAVSRVLNKLGGVEFNI--DLPNKKVCIESEHSSDILLATLNKTGKA 61
Query: 190 VT 195
V+
Sbjct: 62 VS 63
>sp|Q9JK72|CCS_RAT Copper chaperone for superoxide dismutase (Superoxide dismutase
copper chaperone)
Length = 274
Score = 42.0 bits (97), Expect = 4e-04
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = +1
Query: 13 KFNVAMTCEACANAAKKVLGKLGNAVISVETDVASKTVTVVSTLGRDEIKAALEKTGKE 189
+F V M+C++C +A K L K V +VE + ++ V V +TL E++A LE TG++
Sbjct: 15 EFTVQMSCQSCVDAVHKTL-KGAAGVQNVEVQLENQMVLVQTTLPSQEVQALLESTGRQ 72
>sp|O14618|CCS_HUMAN Copper chaperone for superoxide dismutase (Superoxide dismutase
copper chaperone)
Length = 274
Score = 41.6 bits (96), Expect = 6e-04
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +1
Query: 7 TYKFNVAMTCEACANAAKKVLGKLGNAVISVETDVASKTVTVVSTLGRDEIKAALEKTGK 186
T +F V MTC++C +A +K L + V VE + + V V +TL E++A LE TG+
Sbjct: 13 TLEFAVQMTCQSCVDAVRKSLQGVA-GVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGR 71
Query: 187 E 189
+
Sbjct: 72 Q 72
>sp|Q9WU84|CCS_MOUSE Copper chaperone for superoxide dismutase (Superoxide dismutase
copper chaperone)
Length = 274
Score = 39.3 bits (90), Expect = 0.003
Identities = 20/59 (33%), Positives = 36/59 (61%)
Frame = +1
Query: 13 KFNVAMTCEACANAAKKVLGKLGNAVISVETDVASKTVTVVSTLGRDEIKAALEKTGKE 189
+F V M+C++C +A K L + V +V+ + ++ V V +TL E++A LE TG++
Sbjct: 15 EFAVQMSCQSCVDAVHKTLKGVA-GVQNVDVQLENQMVLVQTTLPSQEVQALLESTGRQ 72
>sp|Q6PWT7|CCS_PIG Copper chaperone for superoxide dismutase (Superoxide dismutase
copper chaperone)
Length = 274
Score = 38.1 bits (87), Expect = 0.006
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +1
Query: 13 KFNVAMTCEACANAAKKVLGKLGNAVISVETDVASKTVTVVSTLGRDEIKAALEKTGKE 189
+F V MTC++C +A + L + + SVE + ++ V V +TL ++A LE TG++
Sbjct: 15 EFAVQMTCQSCVDAVSRSLQGVAG-IQSVEVQLENQMVLVQTTLPSQVVQALLEDTGRQ 72
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,334,770
Number of Sequences: 369166
Number of extensions: 249765
Number of successful extensions: 841
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)